Wall clock time and date at job start Mon Mar 30 2020 07:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00343 * 2 1 4 4 C 1.50704 * 109.46661 * 71.87283 * 3 2 1 5 5 H 1.07995 * 120.00204 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99716 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99803 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99759 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46913 * 60.00502 * 8 6 4 10 10 H 1.48497 * 109.47102 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47282 * 300.00297 * 8 6 4 12 12 C 1.46907 * 110.99435 * 236.05036 * 2 1 3 13 13 H 1.08996 * 109.14515 * 314.32378 * 12 2 1 14 14 C 1.52794 * 109.15219 * 73.54727 * 12 2 1 15 15 C 1.52752 * 108.50955 * 210.18623 * 14 12 2 16 16 N 1.46461 * 110.10039 * 298.62777 * 15 14 12 17 17 C 1.47044 * 109.36205 * 326.74255 * 16 15 14 18 18 C 1.50592 * 111.20865 * 93.73765 * 17 16 15 19 19 C 1.38986 * 117.59641 * 130.12611 * 18 17 16 20 20 C 1.37931 * 120.51435 * 178.39349 * 19 18 17 21 21 C 1.38268 * 119.76847 * 359.50209 * 20 19 18 22 22 C 1.37929 * 119.75905 * 0.60576 * 21 20 19 23 23 C 1.37394 * 122.69086 * 308.92268 * 18 17 16 24 24 H 1.09001 * 109.47492 * 183.95577 * 1 2 3 25 25 H 1.09009 * 109.46246 * 303.94736 * 1 2 3 26 26 H 1.08997 * 109.47317 * 63.94163 * 1 2 3 27 27 H 1.09001 * 109.47497 * 191.86977 * 3 2 1 28 28 H 1.08996 * 109.47741 * 311.87166 * 3 2 1 29 29 H 0.97003 * 119.99369 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.63444 * 90.47827 * 14 12 2 31 31 H 1.09004 * 109.79727 * 329.98796 * 14 12 2 32 32 H 1.08999 * 109.36621 * 178.43840 * 15 14 12 33 33 H 1.09001 * 109.36942 * 58.82120 * 15 14 12 34 34 H 1.00898 * 111.00314 * 203.93378 * 16 15 14 35 35 H 1.09002 * 109.12672 * 333.29070 * 17 16 15 36 36 H 1.09000 * 109.12507 * 214.18034 * 17 16 15 37 37 H 1.08000 * 119.74603 * 358.41334 * 19 18 17 38 38 H 1.08000 * 120.11186 * 179.48673 * 20 19 18 39 39 H 1.07998 * 120.12033 * 180.32278 * 21 20 19 40 40 H 1.07997 * 119.74999 * 180.23833 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.7628 1.9987 1.3504 5 1 1.2732 1.4349 2.1306 6 6 2.1760 3.2921 1.5900 7 7 2.7727 3.9785 0.6400 8 14 1.8869 4.0699 3.2636 9 1 2.5810 3.2726 4.3065 10 1 2.4192 5.4562 3.2637 11 1 0.4303 4.0995 3.5508 12 6 1.9953 -0.7660 -1.1377 13 1 1.4517 -1.7074 -1.2170 14 6 1.7933 0.0392 -2.4205 15 6 1.6094 -0.9364 -3.5815 16 7 2.8066 -1.7656 -3.7365 17 6 3.9947 -0.9795 -3.3724 18 6 4.3641 -1.1879 -1.9274 19 6 5.6873 -1.5010 -1.6398 20 6 6.0987 -1.6720 -0.3345 21 6 5.1904 -1.5208 0.6970 22 6 3.8765 -1.2124 0.4125 23 6 3.4575 -1.0568 -0.9034 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3632 0.5740 0.8526 26 1 -0.3634 0.4514 -0.9232 27 1 3.0646 1.3501 -0.2114 28 1 1.4855 1.9565 -0.7652 29 1 3.0630 4.8886 0.8086 30 1 2.6677 0.6641 -2.6023 31 1 0.9075 0.6675 -2.3264 32 1 1.4363 -0.3762 -4.5003 33 1 0.7496 -1.5764 -3.3831 34 1 2.8819 -2.1195 -4.6784 35 1 3.7884 0.0777 -3.5395 36 1 4.8308 -1.2833 -4.0023 37 1 6.3990 -1.6109 -2.4447 38 1 7.1267 -1.9233 -0.1189 39 1 5.5076 -1.6483 1.7214 40 1 3.1681 -1.0906 1.2184 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129451006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:53 Heat of formation + Delta-G solvation = 45.788174 kcal Electronic energy + Delta-G solvation = -20324.229459 eV Core-core repulsion = 17524.997496 eV Total energy + Delta-G solvation = -2799.231963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.99073 -37.06308 -36.08045 -32.65690 -31.14670 -30.95069 -29.48062 -27.24858 -25.55036 -25.44636 -23.54832 -21.78555 -21.14968 -20.11514 -19.00733 -16.65990 -16.26925 -15.84107 -15.43467 -14.71040 -14.57085 -14.33983 -13.93924 -13.64377 -13.56750 -12.96512 -12.64977 -12.14980 -12.04917 -11.87950 -11.80438 -11.39530 -11.19805 -11.04670 -10.93773 -10.76812 -10.54073 -10.48082 -10.37730 -10.04897 -9.75394 -9.20720 -8.44942 -8.39438 -8.13383 -7.99042 -7.19192 -5.98628 -3.99502 1.91654 2.00151 3.34887 3.39003 3.41886 4.21814 4.44434 4.49653 4.90663 5.11826 5.18259 5.29336 5.35070 5.37660 5.41110 5.54250 5.59712 5.71734 5.73525 5.93922 6.02601 6.06452 6.15394 6.19242 6.28773 6.43278 6.55788 6.64314 6.68201 6.74978 6.96555 7.01589 7.14298 7.21126 7.36716 7.41897 7.48478 7.62463 7.85100 8.16098 8.24669 8.59350 9.08006 9.64197 11.11851 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.007198 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.989520 B = 3888.944228 C = 4570.751274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.536 5.536 3 C 0.195 3.805 4 C -0.505 4.505 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.133 3.867 13 H 0.081 0.919 14 C -0.161 4.161 15 C 0.056 3.944 16 N -0.677 5.677 17 C 0.089 3.911 18 C -0.073 4.073 19 C -0.130 4.130 20 C -0.129 4.129 21 C -0.132 4.132 22 C -0.081 4.081 23 C -0.044 4.044 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.013 0.987 27 H 0.031 0.969 28 H -0.009 1.009 29 H 0.260 0.740 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.340 0.660 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 -10.674 -7.690 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.259 5.259 3 C 0.070 3.930 4 C -0.544 4.544 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.024 3.976 13 H 0.099 0.901 14 C -0.200 4.200 15 C -0.073 4.073 16 N -0.307 5.307 17 C -0.040 4.040 18 C -0.074 4.074 19 C -0.148 4.148 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.099 4.099 23 C -0.044 4.044 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.156 0.844 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.815 -11.021 -6.663 13.005 hybrid contribution -0.201 1.678 -0.632 1.805 sum 1.613 -9.342 -7.295 11.962 Atomic orbital electron populations 1.22226 0.88914 0.99669 1.00450 1.62336 1.06620 1.18255 1.38708 1.19701 0.95326 0.81432 0.96517 1.21143 1.37937 0.97445 0.97877 0.92051 1.24972 0.95429 0.97242 0.96918 1.69954 1.40436 1.10770 1.32645 0.86605 0.78410 0.78165 0.84480 1.20203 1.21454 1.20372 1.20448 0.92003 0.96623 0.88539 0.90148 1.22512 1.03291 0.98476 0.95697 1.21999 0.93412 0.94665 0.97254 1.60735 1.02007 1.37580 1.30391 1.20920 0.92536 0.97164 0.93339 1.19356 0.93168 1.00713 0.94202 1.20948 0.95022 1.02409 0.96449 1.20912 0.98970 1.01803 0.93034 1.21083 0.93986 1.01250 0.98654 1.21421 0.95828 0.95504 0.97114 1.19487 0.94547 0.97757 0.92649 0.93570 0.90792 0.96891 0.95094 0.99111 0.93013 0.90643 0.90519 0.95353 0.91043 0.84352 0.92236 0.91524 0.87133 0.87001 0.86721 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.18 60.07 0.55 1.23 16 2 N -0.54 -11.35 3.32 -237.73 -0.79 -12.14 16 3 C 0.20 5.00 3.52 -4.98 -0.02 4.98 16 4 C -0.51 -14.11 8.54 -34.44 -0.29 -14.40 16 5 H 0.06 1.69 7.52 -52.49 -0.39 1.30 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.13 2.45 1.97 -68.86 -0.14 2.32 16 13 H 0.08 1.44 7.54 -51.93 -0.39 1.05 16 14 C -0.16 -2.75 3.81 -26.96 -0.10 -2.85 16 15 C 0.06 0.76 6.27 -4.19 -0.03 0.73 16 16 N -0.68 -8.79 6.73 -115.48 -0.78 -9.57 16 17 C 0.09 1.25 5.71 -4.95 -0.03 1.23 16 18 C -0.07 -1.23 5.47 -104.70 -0.57 -1.81 16 19 C -0.13 -2.01 9.57 -39.42 -0.38 -2.39 16 20 C -0.13 -2.01 10.05 -39.68 -0.40 -2.41 16 21 C -0.13 -2.25 10.05 -39.68 -0.40 -2.65 16 22 C -0.08 -1.56 8.77 -39.42 -0.35 -1.90 16 23 C -0.04 -0.82 4.49 -104.55 -0.47 -1.29 16 24 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 25 H 0.07 1.50 7.19 -51.92 -0.37 1.13 16 26 H 0.01 0.23 6.60 -51.93 -0.34 -0.11 16 27 H 0.03 0.87 6.93 -51.93 -0.36 0.51 16 28 H -0.01 -0.24 7.04 -51.93 -0.37 -0.61 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.08 1.42 5.40 -51.93 -0.28 1.14 16 31 H 0.08 1.39 5.70 -51.93 -0.30 1.09 16 32 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 34 H 0.34 3.46 8.90 -39.29 -0.35 3.11 16 35 H 0.06 0.90 5.70 -51.93 -0.30 0.60 16 36 H 0.07 0.78 7.72 -51.93 -0.40 0.38 16 37 H 0.11 1.41 7.82 -52.49 -0.41 1.00 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.14 2.86 7.17 -52.49 -0.38 2.48 16 LS Contribution 306.96 15.07 4.63 4.63 Total: -1.00 -30.14 306.96 -9.82 -39.95 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.88 Total: 4.16 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -2.71 Total: -17.73 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.83 Total: -47.77 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.14 -9.82 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129451006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.742 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds