Wall clock time and date at job start Mon Mar 30 2020 07:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00343 * 2 1 4 4 C 1.50704 * 109.46661 * 71.87283 * 3 2 1 5 5 H 1.07995 * 120.00204 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99716 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99803 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99759 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46913 * 60.00502 * 8 6 4 10 10 H 1.48497 * 109.47102 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47282 * 300.00297 * 8 6 4 12 12 C 1.46907 * 110.99435 * 236.05036 * 2 1 3 13 13 H 1.08996 * 109.14515 * 314.32378 * 12 2 1 14 14 C 1.52794 * 109.15219 * 73.54727 * 12 2 1 15 15 C 1.52752 * 108.50955 * 210.18623 * 14 12 2 16 16 N 1.46461 * 110.10039 * 298.62777 * 15 14 12 17 17 C 1.47044 * 109.36205 * 326.74255 * 16 15 14 18 18 C 1.50592 * 111.20865 * 93.73765 * 17 16 15 19 19 C 1.38986 * 117.59641 * 130.12611 * 18 17 16 20 20 C 1.37931 * 120.51435 * 178.39349 * 19 18 17 21 21 C 1.38268 * 119.76847 * 359.50209 * 20 19 18 22 22 C 1.37929 * 119.75905 * 0.60576 * 21 20 19 23 23 C 1.37394 * 122.69086 * 308.92268 * 18 17 16 24 24 H 1.09001 * 109.47492 * 183.95577 * 1 2 3 25 25 H 1.09009 * 109.46246 * 303.94736 * 1 2 3 26 26 H 1.08997 * 109.47317 * 63.94163 * 1 2 3 27 27 H 1.09001 * 109.47497 * 191.86977 * 3 2 1 28 28 H 1.08996 * 109.47741 * 311.87166 * 3 2 1 29 29 H 0.97003 * 119.99369 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.63444 * 90.47827 * 14 12 2 31 31 H 1.09004 * 109.79727 * 329.98796 * 14 12 2 32 32 H 1.08999 * 109.36621 * 178.43840 * 15 14 12 33 33 H 1.09001 * 109.36942 * 58.82120 * 15 14 12 34 34 H 1.00898 * 111.00314 * 203.93378 * 16 15 14 35 35 H 1.09002 * 109.12672 * 333.29070 * 17 16 15 36 36 H 1.09000 * 109.12507 * 214.18034 * 17 16 15 37 37 H 1.08000 * 119.74603 * 358.41334 * 19 18 17 38 38 H 1.08000 * 120.11186 * 179.48673 * 20 19 18 39 39 H 1.07998 * 120.12033 * 180.32278 * 21 20 19 40 40 H 1.07997 * 119.74999 * 180.23833 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.7628 1.9987 1.3504 5 1 1.2732 1.4349 2.1306 6 6 2.1760 3.2921 1.5900 7 7 2.7727 3.9785 0.6400 8 14 1.8869 4.0699 3.2636 9 1 2.5810 3.2726 4.3065 10 1 2.4192 5.4562 3.2637 11 1 0.4303 4.0995 3.5508 12 6 1.9953 -0.7660 -1.1377 13 1 1.4517 -1.7074 -1.2170 14 6 1.7933 0.0392 -2.4205 15 6 1.6094 -0.9364 -3.5815 16 7 2.8066 -1.7656 -3.7365 17 6 3.9947 -0.9795 -3.3724 18 6 4.3641 -1.1879 -1.9274 19 6 5.6873 -1.5010 -1.6398 20 6 6.0987 -1.6720 -0.3345 21 6 5.1904 -1.5208 0.6970 22 6 3.8765 -1.2124 0.4125 23 6 3.4575 -1.0568 -0.9034 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3632 0.5740 0.8526 26 1 -0.3634 0.4514 -0.9232 27 1 3.0646 1.3501 -0.2114 28 1 1.4855 1.9565 -0.7652 29 1 3.0630 4.8886 0.8086 30 1 2.6677 0.6641 -2.6023 31 1 0.9075 0.6675 -2.3264 32 1 1.4363 -0.3762 -4.5003 33 1 0.7496 -1.5764 -3.3831 34 1 2.8819 -2.1195 -4.6784 35 1 3.7884 0.0777 -3.5395 36 1 4.8308 -1.2833 -4.0023 37 1 6.3990 -1.6109 -2.4447 38 1 7.1267 -1.9233 -0.1189 39 1 5.5076 -1.6483 1.7214 40 1 3.1681 -1.0906 1.2184 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129451006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:53 Heat of formation + Delta-G solvation = 26.065406 kcal Electronic energy + Delta-G solvation = -20325.084703 eV Core-core repulsion = 17524.997496 eV Total energy + Delta-G solvation = -2800.087207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33163 -38.47345 -37.44514 -34.75505 -32.52355 -32.30199 -30.80200 -29.25169 -27.04442 -26.64788 -25.36154 -23.32537 -22.53557 -21.34525 -20.56706 -18.53265 -17.71050 -17.20382 -16.71792 -16.56542 -16.01217 -15.68198 -15.39642 -15.22589 -15.06402 -14.40633 -14.01307 -13.95195 -13.47947 -13.33924 -13.16395 -13.04326 -12.77064 -12.72514 -12.36491 -12.32408 -12.28780 -12.09337 -11.78742 -11.71162 -11.38266 -11.25989 -10.58291 -9.57941 -9.42910 -9.27893 -8.90811 -8.17729 -6.27236 0.60936 0.67856 1.39160 1.42222 1.49856 2.40276 2.97061 3.14032 3.33934 3.38712 3.75877 4.04661 4.08074 4.11421 4.14059 4.33794 4.41482 4.44985 4.48017 4.59346 4.63582 4.77147 4.79007 4.81659 4.94454 4.98995 5.10958 5.19329 5.27787 5.33608 5.35060 5.38849 5.65865 5.71347 5.78426 5.88077 5.94869 6.12795 6.30503 6.41884 6.58057 6.70067 6.89496 7.41884 8.92204 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.007198 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.989520 B = 3888.944228 C = 4570.751274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.544 5.544 3 C 0.225 3.775 4 C -0.521 4.521 5 H 0.059 0.941 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.136 3.864 13 H 0.089 0.911 14 C -0.153 4.153 15 C 0.066 3.934 16 N -0.678 5.678 17 C 0.092 3.908 18 C -0.085 4.085 19 C -0.130 4.130 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.110 4.110 23 C -0.070 4.070 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.017 0.983 27 H -0.003 1.003 28 H -0.038 1.038 29 H 0.262 0.738 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.360 0.640 35 H 0.045 0.955 36 H 0.098 0.902 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.128 0.872 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -11.873 -8.397 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.267 5.267 3 C 0.099 3.901 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.192 1.192 12 C 0.028 3.972 13 H 0.107 0.893 14 C -0.192 4.192 15 C -0.064 4.064 16 N -0.310 5.310 17 C -0.037 4.037 18 C -0.086 4.086 19 C -0.148 4.148 20 C -0.146 4.146 21 C -0.161 4.161 22 C -0.129 4.129 23 C -0.071 4.071 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.015 0.985 28 H -0.020 1.020 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.179 0.821 35 H 0.063 0.937 36 H 0.116 0.884 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.146 0.854 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.410 -12.250 -7.386 14.506 hybrid contribution -0.355 1.994 -0.437 2.072 sum 2.056 -10.256 -7.823 13.062 Atomic orbital electron populations 1.22233 0.87555 1.01342 0.99895 1.62224 1.07890 1.15657 1.40892 1.19155 0.92969 0.83393 0.94598 1.21484 1.37805 0.97938 0.98761 0.92236 1.25861 0.95012 0.97796 1.00871 1.70089 1.41388 1.11107 1.34813 0.85517 0.78802 0.77178 0.79610 1.19543 1.20926 1.19228 1.20476 0.92325 0.96351 0.88038 0.89336 1.22378 1.01411 0.98678 0.96764 1.21879 0.94082 0.94202 0.96221 1.60648 1.01260 1.37077 1.32009 1.20897 0.94076 0.96578 0.92181 1.19767 0.93588 1.00015 0.95248 1.21401 0.95011 1.00855 0.97534 1.21315 1.00154 1.00472 0.92655 1.21326 0.93478 1.01188 1.00154 1.21365 0.96700 0.97881 0.96918 1.19665 0.95081 0.99154 0.93211 0.90478 0.92531 0.96430 0.98455 1.02026 0.92915 0.92890 0.92169 0.93518 0.89985 0.82072 0.93668 0.88422 0.83680 0.83698 0.85379 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 9.18 127.69 1.17 2.63 16 2 N -0.54 -23.90 3.32 -906.05 -3.01 -26.91 16 3 C 0.23 12.12 3.52 85.56 0.30 12.42 16 4 C -0.52 -30.10 8.54 25.60 0.22 -29.89 16 5 H 0.06 3.38 7.52 -2.91 -0.02 3.36 16 6 C 0.00 0.14 5.46 84.66 0.46 0.60 16 7 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 8 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 C 0.14 5.14 1.97 44.17 0.09 5.23 16 13 H 0.09 3.15 7.54 -2.39 -0.02 3.13 16 14 C -0.15 -5.32 3.81 30.44 0.12 -5.21 16 15 C 0.07 1.66 6.27 86.30 0.54 2.21 16 16 N -0.68 -15.95 6.73 -519.26 -3.50 -19.44 16 17 C 0.09 2.40 5.71 85.50 0.49 2.89 16 18 C -0.08 -2.78 5.47 -19.92 -0.11 -2.89 16 19 C -0.13 -3.73 9.57 22.38 0.21 -3.51 16 20 C -0.13 -3.74 10.05 22.20 0.22 -3.51 16 21 C -0.14 -4.90 10.05 22.20 0.22 -4.68 16 22 C -0.11 -4.42 8.77 22.37 0.20 -4.22 16 23 C -0.07 -2.70 4.49 -19.82 -0.09 -2.79 16 24 H 0.08 2.47 8.09 -2.39 -0.02 2.45 16 25 H 0.06 2.35 7.19 -2.38 -0.02 2.33 16 26 H 0.02 0.65 6.60 -2.39 -0.02 0.63 16 27 H 0.00 -0.16 6.93 -2.39 -0.02 -0.18 16 28 H -0.04 -2.22 7.04 -2.39 -0.02 -2.23 16 29 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.05 2.07 5.40 -2.39 -0.01 2.06 16 31 H 0.06 2.26 5.70 -2.39 -0.01 2.24 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.94 8.04 -2.39 -0.02 1.92 16 34 H 0.36 6.11 8.90 -89.70 -0.80 5.31 16 35 H 0.05 1.34 5.70 -2.39 -0.01 1.32 16 36 H 0.10 1.94 7.72 -2.39 -0.02 1.92 16 37 H 0.15 3.11 7.82 -2.91 -0.02 3.08 16 38 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 39 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.11 4.96 7.17 -2.91 -0.02 4.94 16 Total: -1.00 -67.34 306.96 0.09 -67.25 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.24 Total: 19.50 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.04 Total: -30.72 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -6.22 Total: -103.27 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.34 0.09 -67.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129451006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.311 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds