Wall clock time and date at job start Mon Mar 30 2020 06:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47419 * 2 1 4 4 C 1.46896 * 111.00187 * 299.36018 * 3 2 1 5 5 C 1.50694 * 109.47005 * 293.56537 * 4 3 2 6 6 H 1.08001 * 120.00082 * 354.96264 * 5 4 3 7 7 C 1.37878 * 120.00429 * 174.97351 * 5 4 3 8 8 N 1.31526 * 119.99521 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00586 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47368 * 89.99596 * 9 7 5 11 11 H 1.48500 * 109.47466 * 209.99726 * 9 7 5 12 12 H 1.48507 * 109.46910 * 329.99372 * 9 7 5 13 13 C 1.46907 * 110.99682 * 63.31337 * 3 2 1 14 14 C 1.50696 * 109.47204 * 66.04335 * 13 3 2 15 15 C 1.37951 * 119.90607 * 260.00203 * 14 13 3 16 16 C 1.38263 * 120.26388 * 179.73049 * 15 14 13 17 17 C 1.38350 * 119.88520 * 359.85072 * 16 15 14 18 18 C 1.37874 * 120.08022 * 0.02562 * 17 16 15 19 19 C 1.39003 * 120.47885 * 0.28420 * 18 17 16 20 20 N 1.40040 * 110.94324 * 179.24290 * 19 18 17 21 21 C 1.47921 * 107.85214 * 18.64386 * 20 19 18 22 22 C 1.51569 * 131.56835 * 180.66181 * 18 17 16 23 23 H 1.08994 * 109.47107 * 60.65066 * 1 2 3 24 24 H 1.09004 * 109.46778 * 180.64829 * 1 2 3 25 25 H 1.09005 * 109.47018 * 300.64607 * 1 2 3 26 26 H 1.09004 * 109.47373 * 240.00519 * 2 1 3 27 27 H 1.09000 * 109.47293 * 120.00423 * 2 1 3 28 28 H 1.09005 * 109.47128 * 53.56237 * 4 3 2 29 29 H 1.08997 * 109.47426 * 173.55780 * 4 3 2 30 30 H 0.96998 * 119.99592 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.46627 * 306.04680 * 13 3 2 32 32 H 1.08998 * 109.47011 * 186.05309 * 13 3 2 33 33 H 1.07998 * 119.86891 * 359.74416 * 15 14 13 34 34 H 1.07995 * 120.05882 * 179.88358 * 16 15 14 35 35 H 1.08001 * 119.96126 * 179.97438 * 17 16 15 36 36 H 1.00900 * 111.00595 * 256.84503 * 20 19 18 37 37 H 1.09001 * 110.77625 * 90.88657 * 21 20 19 38 38 H 1.08999 * 110.77753 * 214.12913 * 21 20 19 39 39 H 1.09003 * 110.73989 * 282.23111 * 22 18 17 40 40 H 1.08994 * 110.73844 * 45.54904 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5613 2.1055 -1.1952 5 6 2.2038 1.5068 -2.4198 6 1 2.9457 0.7290 -2.3149 7 6 1.8447 1.9521 -3.6744 8 7 0.9409 2.8991 -3.8022 9 14 2.6415 1.2105 -5.1923 10 1 1.8444 0.0442 -5.6502 11 1 2.6934 2.2290 -6.2718 12 1 4.0203 0.7688 -4.8618 13 6 1.6145 2.0866 1.2254 14 6 2.3025 1.4630 2.4123 15 6 1.6212 0.5668 3.2096 16 6 2.2471 -0.0141 4.2971 17 6 3.5628 0.3022 4.5853 18 6 4.2489 1.1953 3.7900 19 6 3.6268 1.7896 2.6983 20 7 4.4972 2.6705 2.0445 21 6 5.8777 2.3304 2.4526 22 6 5.6728 1.7110 3.8542 23 1 -0.3633 0.5037 -0.8957 24 1 -0.3633 -1.0277 0.0116 25 1 -0.3633 0.5239 0.8842 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.4774 2.0224 -1.2762 29 1 1.8402 3.1562 -1.1154 30 1 0.6886 3.2127 -4.6847 31 1 0.5344 2.0078 1.3489 32 1 1.8961 3.1371 1.1526 33 1 0.5950 0.3177 2.9834 34 1 1.7100 -0.7138 4.9202 35 1 4.0527 -0.1505 5.4347 36 1 4.2790 3.6292 2.2711 37 1 6.3150 1.6030 1.7686 38 1 6.4960 3.2262 2.5091 39 1 5.7738 2.4700 4.6299 40 1 6.3727 0.8922 4.0204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130522952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:43 Heat of formation + Delta-G solvation = 41.175004 kcal Electronic energy + Delta-G solvation = -19734.808284 eV Core-core repulsion = 16935.376278 eV Total energy + Delta-G solvation = -2799.432005 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36342 -37.35734 -35.90967 -32.73939 -31.86653 -29.55884 -28.86071 -28.68201 -26.77960 -24.53017 -23.05748 -22.38632 -21.23139 -20.55848 -18.96071 -16.96564 -16.10819 -15.74876 -15.19792 -14.97538 -14.82121 -14.64896 -14.05883 -13.70957 -13.28617 -12.88093 -12.66690 -12.51053 -12.15433 -12.02565 -11.73453 -11.57505 -11.27478 -11.18330 -11.00549 -10.79236 -10.74101 -10.53049 -10.36407 -9.94332 -9.68114 -9.44827 -9.09416 -8.44448 -8.33382 -7.59601 -6.97525 -5.93761 -3.93411 1.54459 1.61102 3.36907 3.42900 3.48253 3.89279 4.04079 4.51215 4.67115 4.87831 5.05701 5.13900 5.17708 5.34875 5.41714 5.49649 5.55254 5.66132 5.73721 5.86987 5.92601 5.97684 6.01929 6.13293 6.17611 6.29394 6.40012 6.55399 6.60804 6.66917 6.75884 6.81928 6.97717 7.04664 7.28822 7.44699 7.54237 7.55220 7.92701 8.23147 8.35864 8.69586 9.15188 9.70002 11.16935 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.005652 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.464970 B = 4952.494674 C = 5632.868332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.062 3.938 3 N -0.517 5.517 4 C 0.190 3.810 5 C -0.497 4.497 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.095 3.905 14 C -0.061 4.061 15 C -0.099 4.099 16 C -0.141 4.141 17 C -0.096 4.096 18 C -0.157 4.157 19 C 0.122 3.878 20 N -0.617 5.617 21 C 0.056 3.944 22 C -0.109 4.109 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.001 0.999 29 H 0.024 0.976 30 H 0.259 0.741 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.350 0.650 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 -2.694 16.818 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.067 4.067 3 N -0.241 5.241 4 C 0.065 3.935 5 C -0.536 4.536 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 C -0.033 4.033 14 C -0.063 4.063 15 C -0.118 4.118 16 C -0.160 4.160 17 C -0.115 4.115 18 C -0.161 4.161 19 C 0.024 3.976 20 N -0.245 5.245 21 C -0.073 4.073 22 C -0.147 4.147 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.018 0.982 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.176 0.824 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.277 -2.830 15.968 17.054 hybrid contribution -0.515 -0.098 -0.072 0.529 sum 4.762 -2.927 15.896 16.850 Atomic orbital electron populations 1.22400 0.99722 1.00693 1.01924 1.21947 0.91767 0.91834 1.01156 1.62326 1.58988 1.01490 1.01257 1.19768 0.94226 0.93614 0.85856 1.21154 1.22087 1.20394 0.89939 0.92029 1.24965 0.95368 0.95339 0.98995 1.69967 1.32061 1.28900 1.23248 0.86550 0.79864 0.78686 0.82628 1.20882 1.21387 1.19839 1.20898 0.95575 0.97871 0.88946 1.19440 0.92354 0.97848 0.96673 1.20867 0.99813 0.96286 0.94859 1.20907 0.94772 1.01645 0.98675 1.20242 0.94361 0.97728 0.99151 1.20967 0.96782 1.01862 0.96439 1.19225 0.92236 0.95809 0.90347 1.58178 1.01454 1.06195 1.58627 1.22980 0.89698 1.00868 0.93750 1.21685 0.93646 1.00582 0.98835 0.91241 0.93657 0.93846 0.90469 0.93050 0.98159 0.95815 0.93127 0.95091 0.90994 0.86093 0.86307 0.86909 0.82421 0.89509 0.90159 0.90683 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.52 9.25 37.16 0.34 -3.18 16 2 C 0.06 1.26 5.63 -3.82 -0.02 1.24 16 3 N -0.52 -11.47 4.69 -237.52 -1.11 -12.58 16 4 C 0.19 5.01 4.50 -4.98 -0.02 4.99 16 5 C -0.50 -14.20 8.41 -34.44 -0.29 -14.49 16 6 H 0.06 1.78 7.33 -52.49 -0.38 1.39 16 7 C 0.05 1.55 5.46 -17.81 -0.10 1.45 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.10 1.80 4.85 -4.97 -0.02 1.77 16 14 C -0.06 -1.01 4.61 -104.31 -0.48 -1.49 16 15 C -0.10 -1.44 8.60 -39.68 -0.34 -1.78 16 16 C -0.14 -1.81 10.06 -39.53 -0.40 -2.20 16 17 C -0.10 -1.22 10.03 -39.67 -0.40 -1.62 16 18 C -0.16 -2.18 6.23 -104.04 -0.65 -2.82 16 19 C 0.12 1.95 6.50 -83.41 -0.54 1.41 16 20 N -0.62 -9.34 7.12 -56.56 -0.40 -9.74 16 21 C 0.06 0.66 7.80 -2.43 -0.02 0.64 16 22 C -0.11 -1.20 7.03 -26.62 -0.19 -1.38 16 23 H 0.07 1.50 6.32 -51.93 -0.33 1.17 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.74 6.01 -51.93 -0.31 0.43 16 26 H 0.08 1.72 6.97 -51.93 -0.36 1.36 16 27 H 0.05 0.97 6.45 -51.93 -0.34 0.64 16 28 H 0.00 0.02 6.01 -51.93 -0.31 -0.29 16 29 H 0.02 0.67 7.92 -51.93 -0.41 0.26 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.03 0.57 5.95 -51.93 -0.31 0.26 16 32 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 33 H 0.12 1.63 7.71 -52.49 -0.40 1.23 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.35 4.63 8.86 -39.29 -0.35 4.29 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -31.26 317.49 -10.15 -41.41 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.01 Total: 2.85 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -3.12 Total: -17.48 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.78 Total: -48.67 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.26 -10.15 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130522952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.587 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds