Wall clock time and date at job start Mon Mar 30 2020 06:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47419 * 2 1 4 4 C 1.46896 * 111.00187 * 299.36018 * 3 2 1 5 5 C 1.50694 * 109.47005 * 293.56537 * 4 3 2 6 6 H 1.08001 * 120.00082 * 354.96264 * 5 4 3 7 7 C 1.37878 * 120.00429 * 174.97351 * 5 4 3 8 8 N 1.31526 * 119.99521 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00586 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47368 * 89.99596 * 9 7 5 11 11 H 1.48500 * 109.47466 * 209.99726 * 9 7 5 12 12 H 1.48507 * 109.46910 * 329.99372 * 9 7 5 13 13 C 1.46907 * 110.99682 * 63.31337 * 3 2 1 14 14 C 1.50696 * 109.47204 * 66.04335 * 13 3 2 15 15 C 1.37951 * 119.90607 * 260.00203 * 14 13 3 16 16 C 1.38263 * 120.26388 * 179.73049 * 15 14 13 17 17 C 1.38350 * 119.88520 * 359.85072 * 16 15 14 18 18 C 1.37874 * 120.08022 * 0.02562 * 17 16 15 19 19 C 1.39003 * 120.47885 * 0.28420 * 18 17 16 20 20 N 1.40040 * 110.94324 * 179.24290 * 19 18 17 21 21 C 1.47921 * 107.85214 * 18.64386 * 20 19 18 22 22 C 1.51569 * 131.56835 * 180.66181 * 18 17 16 23 23 H 1.08994 * 109.47107 * 60.65066 * 1 2 3 24 24 H 1.09004 * 109.46778 * 180.64829 * 1 2 3 25 25 H 1.09005 * 109.47018 * 300.64607 * 1 2 3 26 26 H 1.09004 * 109.47373 * 240.00519 * 2 1 3 27 27 H 1.09000 * 109.47293 * 120.00423 * 2 1 3 28 28 H 1.09005 * 109.47128 * 53.56237 * 4 3 2 29 29 H 1.08997 * 109.47426 * 173.55780 * 4 3 2 30 30 H 0.96998 * 119.99592 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.46627 * 306.04680 * 13 3 2 32 32 H 1.08998 * 109.47011 * 186.05309 * 13 3 2 33 33 H 1.07998 * 119.86891 * 359.74416 * 15 14 13 34 34 H 1.07995 * 120.05882 * 179.88358 * 16 15 14 35 35 H 1.08001 * 119.96126 * 179.97438 * 17 16 15 36 36 H 1.00900 * 111.00595 * 256.84503 * 20 19 18 37 37 H 1.09001 * 110.77625 * 90.88657 * 21 20 19 38 38 H 1.08999 * 110.77753 * 214.12913 * 21 20 19 39 39 H 1.09003 * 110.73989 * 282.23111 * 22 18 17 40 40 H 1.08994 * 110.73844 * 45.54904 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5613 2.1055 -1.1952 5 6 2.2038 1.5068 -2.4198 6 1 2.9457 0.7290 -2.3149 7 6 1.8447 1.9521 -3.6744 8 7 0.9409 2.8991 -3.8022 9 14 2.6415 1.2105 -5.1923 10 1 1.8444 0.0442 -5.6502 11 1 2.6934 2.2290 -6.2718 12 1 4.0203 0.7688 -4.8618 13 6 1.6145 2.0866 1.2254 14 6 2.3025 1.4630 2.4123 15 6 1.6212 0.5668 3.2096 16 6 2.2471 -0.0141 4.2971 17 6 3.5628 0.3022 4.5853 18 6 4.2489 1.1953 3.7900 19 6 3.6268 1.7896 2.6983 20 7 4.4972 2.6705 2.0445 21 6 5.8777 2.3304 2.4526 22 6 5.6728 1.7110 3.8542 23 1 -0.3633 0.5037 -0.8957 24 1 -0.3633 -1.0277 0.0116 25 1 -0.3633 0.5239 0.8842 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.4774 2.0224 -1.2762 29 1 1.8402 3.1562 -1.1154 30 1 0.6886 3.2127 -4.6847 31 1 0.5344 2.0078 1.3489 32 1 1.8961 3.1371 1.1526 33 1 0.5950 0.3177 2.9834 34 1 1.7100 -0.7138 4.9202 35 1 4.0527 -0.1505 5.4347 36 1 4.2790 3.6292 2.2711 37 1 6.3150 1.6030 1.7686 38 1 6.4960 3.2262 2.5091 39 1 5.7738 2.4700 4.6299 40 1 6.3727 0.8922 4.0204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130522952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:42 Heat of formation + Delta-G solvation = 20.823892 kcal Electronic energy + Delta-G solvation = -19735.690774 eV Core-core repulsion = 16935.376278 eV Total energy + Delta-G solvation = -2800.314496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43689 -38.94603 -37.06027 -34.78262 -33.20916 -31.09652 -30.22863 -29.72013 -28.51978 -26.09984 -24.94760 -23.47728 -22.33927 -21.86490 -20.50239 -18.35029 -18.01208 -16.97918 -16.77375 -16.32428 -16.07431 -16.04111 -15.84067 -14.79388 -14.76274 -14.42240 -13.97968 -13.76827 -13.55221 -13.36860 -13.15476 -13.08178 -12.82070 -12.67583 -12.54589 -12.46113 -12.21371 -12.11487 -11.95111 -11.60640 -11.45652 -11.20093 -10.57369 -10.51443 -9.53885 -8.79688 -8.65687 -8.15877 -6.24893 0.48259 0.52169 1.39900 1.41350 1.53123 2.42059 2.80748 3.03629 3.15754 3.57595 3.74761 3.87238 4.08559 4.18244 4.23144 4.31967 4.35564 4.49968 4.54107 4.59527 4.67834 4.75465 4.78648 4.86107 4.96610 5.01682 5.04944 5.09213 5.25426 5.28912 5.39341 5.50796 5.58047 5.61099 5.69021 5.71725 5.93110 6.13224 6.27232 6.45622 6.47837 6.75264 6.92137 7.43989 8.94247 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.005652 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.464970 B = 4952.494674 C = 5632.868332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 N -0.526 5.526 4 C 0.208 3.792 5 C -0.513 4.513 6 H 0.054 0.946 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.103 3.897 14 C -0.087 4.087 15 C -0.106 4.106 16 C -0.137 4.137 17 C -0.094 4.094 18 C -0.164 4.164 19 C 0.099 3.901 20 N -0.645 5.645 21 C 0.053 3.947 22 C -0.099 4.099 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.071 0.929 28 H -0.020 1.020 29 H -0.008 1.008 30 H 0.263 0.737 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.128 0.872 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.354 0.646 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.838 -4.309 18.568 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.062 4.062 3 N -0.250 5.250 4 C 0.082 3.918 5 C -0.552 4.552 6 H 0.072 0.928 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.789 3.211 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.193 1.193 13 C -0.025 4.025 14 C -0.089 4.089 15 C -0.125 4.125 16 C -0.155 4.155 17 C -0.112 4.112 18 C -0.167 4.167 19 C 0.001 3.999 20 N -0.274 5.274 21 C -0.075 4.075 22 C -0.137 4.137 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.090 0.910 28 H -0.003 1.003 29 H 0.010 0.990 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.146 0.854 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.326 -4.453 17.741 19.354 hybrid contribution -0.830 0.416 -0.525 1.067 sum 5.496 -4.037 17.215 18.517 Atomic orbital electron populations 1.22260 0.98278 1.02167 1.00844 1.21887 0.92927 0.90576 1.00812 1.62198 1.59429 1.02241 1.01083 1.19373 0.92663 0.92210 0.87525 1.21391 1.22165 1.20402 0.91219 0.92762 1.25835 0.95787 0.95615 1.02217 1.70089 1.33225 1.30045 1.24196 0.85458 0.78977 0.78118 0.78514 1.19786 1.20648 1.19339 1.20792 0.95960 0.97029 0.88672 1.19325 0.93216 0.99783 0.96625 1.21008 1.00206 0.95993 0.95297 1.21266 0.94991 1.01298 0.97972 1.20666 0.94362 0.96719 0.99475 1.21372 0.98058 1.01613 0.95694 1.19455 0.92296 0.96616 0.91560 1.58162 1.02950 1.06603 1.59675 1.23057 0.88422 1.01784 0.94210 1.21685 0.92201 1.01416 0.98407 0.94805 0.90904 0.92256 0.92911 0.91041 1.00282 0.98988 0.92839 0.94887 0.92622 0.85371 0.83235 0.83843 0.81968 0.91099 0.87631 0.88643 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.60 9.25 71.98 0.67 -5.93 16 2 C 0.07 2.73 5.63 86.30 0.49 3.22 16 3 N -0.53 -24.21 4.69 -905.38 -4.25 -28.45 16 4 C 0.21 11.57 4.50 85.56 0.38 11.95 16 5 C -0.51 -30.35 8.41 25.60 0.22 -30.13 16 6 H 0.05 3.22 7.33 -2.91 -0.02 3.20 16 7 C 0.00 0.18 5.46 84.65 0.46 0.64 16 8 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 9 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 C 0.10 4.03 4.85 85.55 0.41 4.45 16 14 C -0.09 -2.87 4.61 -19.66 -0.09 -2.96 16 15 C -0.11 -2.90 8.60 22.21 0.19 -2.71 16 16 C -0.14 -3.04 10.06 22.30 0.22 -2.82 16 17 C -0.09 -2.05 10.03 22.21 0.22 -1.83 16 18 C -0.16 -4.16 6.23 -19.49 -0.12 -4.29 16 19 C 0.10 3.11 6.50 38.28 0.25 3.36 16 20 N -0.65 -19.66 7.12 -332.86 -2.37 -22.03 16 21 C 0.05 1.21 7.80 86.65 0.68 1.88 16 22 C -0.10 -1.90 7.03 30.67 0.22 -1.68 16 23 H 0.03 1.49 6.32 -2.39 -0.02 1.48 16 24 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 25 H 0.06 2.00 6.01 -2.38 -0.01 1.98 16 26 H 0.05 2.41 6.97 -2.38 -0.02 2.39 16 27 H 0.07 2.66 6.45 -2.39 -0.02 2.65 16 28 H -0.02 -1.20 6.01 -2.38 -0.01 -1.22 16 29 H -0.01 -0.48 7.92 -2.39 -0.02 -0.50 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.03 1.25 5.95 -2.39 -0.01 1.24 16 32 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 33 H 0.13 3.21 7.71 -2.91 -0.02 3.19 16 34 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.35 9.63 8.86 -89.69 -0.79 8.84 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -69.34 317.49 0.13 -69.21 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.24 Total: 17.53 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 4.20 Total: -26.85 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -6.33 Total: -107.81 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -69.34 0.13 -69.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130522952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.035 kcal (2) G-P(sol) polarization free energy of solvation -69.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds