Wall clock time and date at job start Mon Mar 30 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46896 * 110.99955 * 183.95614 * 12 2 1 14 14 C 1.46897 * 111.00012 * 59.99745 * 12 2 1 15 15 C 1.50701 * 109.47242 * 190.00433 * 14 12 2 16 16 C 1.37945 * 119.90160 * 260.00054 * 15 14 12 17 17 C 1.38269 * 120.26704 * 180.02562 * 16 15 14 18 18 C 1.38345 * 119.87892 * 0.15255 * 17 16 15 19 19 C 1.37874 * 120.08513 * 359.94873 * 18 17 16 20 20 C 1.39007 * 120.47727 * 359.51549 * 19 18 17 21 21 N 1.40040 * 110.94669 * 180.57359 * 20 19 18 22 22 C 1.47902 * 107.93532 * 341.86045 * 21 20 19 23 23 C 1.51571 * 131.57121 * 179.56957 * 19 18 17 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47833 * 59.99499 * 13 12 2 29 29 H 1.09009 * 109.46755 * 180.02562 * 13 12 2 30 30 H 1.09001 * 109.47104 * 299.98879 * 13 12 2 31 31 H 1.09009 * 109.46998 * 310.00024 * 14 12 2 32 32 H 1.09000 * 109.47347 * 70.00169 * 14 12 2 33 33 H 1.08005 * 119.87189 * 0.02796 * 16 15 14 34 34 H 1.07992 * 120.06004 * 180.17244 * 17 16 15 35 35 H 1.08003 * 119.95615 * 179.97438 * 18 17 16 36 36 H 1.00904 * 110.78206 * 103.58712 * 21 20 19 37 37 H 1.09005 * 110.77856 * 268.83554 * 22 21 20 38 38 H 1.09009 * 110.93637 * 145.48663 * 22 21 20 39 39 H 1.09000 * 110.74045 * 314.37433 * 23 19 18 40 40 H 1.09002 * 110.73687 * 77.51964 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8579 -0.8909 -3.6160 16 6 2.9585 -0.6127 -4.3997 17 6 3.2490 -1.4008 -5.4981 18 6 2.4310 -2.4707 -5.8144 19 6 1.3286 -2.7518 -5.0355 20 6 1.0342 -1.9723 -3.9229 21 7 -0.1149 -2.4405 -3.2735 22 6 -0.8528 -3.3047 -4.2201 23 6 0.2701 -3.8313 -5.1430 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.9033 -0.5281 4.4375 28 1 3.8030 -1.3531 -0.3068 29 1 3.8209 -1.3108 -2.0865 30 1 3.9187 0.2052 -1.1592 31 1 0.4721 0.1325 -2.3564 32 1 2.0518 0.9348 -2.5280 33 1 3.5959 0.2240 -4.1545 34 1 4.1130 -1.1816 -6.1078 35 1 2.6565 -3.0868 -6.6723 36 1 0.1287 -2.9472 -2.4356 37 1 -1.5796 -2.7238 -4.7881 38 1 -1.3412 -4.1271 -3.6972 39 1 -0.0851 -3.9229 -6.1694 40 1 0.6540 -4.7856 -4.7823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130556305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:23 Heat of formation + Delta-G solvation = 52.052678 kcal Electronic energy + Delta-G solvation = -19868.078663 eV Core-core repulsion = 17069.118349 eV Total energy + Delta-G solvation = -2798.960314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39744 -37.36157 -36.04057 -33.05577 -31.72014 -30.00119 -29.11174 -28.57411 -26.67360 -24.50829 -23.51720 -22.38529 -21.23078 -20.33346 -19.28967 -16.91798 -16.73455 -15.83894 -15.36676 -15.16659 -14.82377 -14.31797 -14.01009 -13.69717 -13.34287 -12.93446 -12.72551 -12.65001 -12.35905 -12.13454 -12.01444 -11.79037 -11.49374 -11.29607 -10.96988 -10.80245 -10.67608 -10.51626 -10.20667 -10.07547 -9.53958 -9.47011 -8.99599 -8.54566 -8.46403 -7.68593 -7.28872 -6.04606 -4.02748 1.50047 1.56725 3.29162 3.39004 3.40925 3.83501 4.02858 4.42282 4.63079 4.85090 4.94373 5.03789 5.11910 5.22640 5.30060 5.43966 5.51167 5.59421 5.68333 5.83582 5.87102 5.98514 6.07513 6.19050 6.29210 6.34871 6.49657 6.53774 6.55946 6.61897 6.66537 6.73657 6.87228 6.92820 6.95966 7.27127 7.34690 7.50874 7.63851 7.99161 8.14636 8.68891 9.01888 9.57859 11.08133 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.028167 B = 0.005659 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.831079 B = 4946.680309 C = 5363.081397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.182 3.818 3 H -0.005 1.005 4 C -0.503 4.503 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.901 5.901 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.518 5.518 13 C 0.036 3.964 14 C 0.087 3.913 15 C -0.062 4.062 16 C -0.099 4.099 17 C -0.141 4.141 18 C -0.095 4.095 19 C -0.156 4.156 20 C 0.122 3.878 21 N -0.627 5.627 22 C 0.052 3.948 23 C -0.109 4.109 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.011 0.989 31 H 0.088 0.912 32 H 0.027 0.973 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.366 0.634 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 -2.830 -18.099 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.075 3.925 3 H 0.013 0.987 4 C -0.541 4.541 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.226 1.226 11 H -0.195 1.195 12 N -0.242 5.242 13 C -0.112 4.112 14 C -0.041 4.041 15 C -0.065 4.065 16 C -0.118 4.118 17 C -0.159 4.159 18 C -0.114 4.114 19 C -0.159 4.159 20 C 0.024 3.976 21 N -0.256 5.256 22 C -0.076 4.076 23 C -0.147 4.147 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.106 0.894 32 H 0.045 0.955 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.194 0.806 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.852 -2.752 -17.878 18.312 hybrid contribution 0.277 0.901 0.181 0.960 sum -2.575 -1.851 -17.697 17.979 Atomic orbital electron populations 1.22176 0.98360 1.01427 0.98055 1.19691 0.91562 0.92511 0.88746 0.98703 1.20984 1.31744 1.13485 0.87893 0.89979 1.24917 0.95843 0.96595 0.95824 1.69885 1.45878 1.40320 0.97845 0.86875 0.80806 0.83870 0.76711 1.20541 1.22622 1.19495 1.61955 1.09790 1.51770 1.00703 1.22264 0.88120 0.99182 1.01666 1.21092 1.01577 0.93017 0.88443 1.19372 0.94644 0.95214 0.97250 1.20864 0.96214 0.99831 0.94915 1.20909 1.00098 0.96603 0.98331 1.20257 0.94204 0.97756 0.99161 1.20948 0.97578 0.97818 0.99528 1.19214 0.90402 0.94153 0.93877 1.58284 1.19853 1.38884 1.08556 1.22978 0.95836 0.95353 0.93444 1.21685 0.94495 0.97178 1.01360 0.94306 0.91958 0.95082 0.92692 0.90164 0.93471 0.97058 0.89398 0.95498 0.86106 0.86237 0.86838 0.80624 0.89959 0.90001 0.90251 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.47 37.16 0.31 -2.87 16 2 C 0.18 4.35 1.65 -68.86 -0.11 4.24 16 3 H 0.00 -0.11 7.20 -51.93 -0.37 -0.49 16 4 C -0.50 -14.01 8.51 -34.44 -0.29 -14.30 16 5 H 0.08 2.48 6.64 -52.49 -0.35 2.13 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 8 Si 0.89 22.17 24.37 -169.99 -4.14 18.03 16 9 H -0.28 -6.79 6.87 56.52 0.39 -6.41 16 10 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 11 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 12 N -0.52 -10.76 4.61 -237.73 -1.10 -11.86 16 13 C 0.04 0.72 9.01 60.06 0.54 1.26 16 14 C 0.09 1.56 4.85 -4.98 -0.02 1.53 16 15 C -0.06 -1.00 4.61 -104.31 -0.48 -1.48 16 16 C -0.10 -1.40 8.58 -39.68 -0.34 -1.74 16 17 C -0.14 -1.75 10.06 -39.53 -0.40 -2.15 16 18 C -0.09 -1.18 10.03 -39.68 -0.40 -1.58 16 19 C -0.16 -2.10 6.23 -104.04 -0.65 -2.74 16 20 C 0.12 1.88 6.50 -83.40 -0.54 1.34 16 21 N -0.63 -9.08 7.12 -56.56 -0.40 -9.49 16 22 C 0.05 0.57 7.80 -2.43 -0.02 0.55 16 23 C -0.11 -1.16 7.03 -26.62 -0.19 -1.34 16 24 H 0.04 0.90 3.27 -51.93 -0.17 0.73 16 25 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.03 0.61 6.20 -51.93 -0.32 0.29 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.08 1.77 6.23 -51.93 -0.32 1.44 16 29 H 0.05 0.84 6.42 -51.92 -0.33 0.51 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 1.63 5.83 -51.92 -0.30 1.33 16 32 H 0.03 0.48 7.97 -51.93 -0.41 0.06 16 33 H 0.12 1.56 8.03 -52.48 -0.42 1.14 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.11 1.14 8.06 -52.48 -0.42 0.71 16 36 H 0.37 5.54 8.85 -39.29 -0.35 5.20 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -30.38 309.26 -8.81 -39.19 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.92 Total: 3.52 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.69 Total: -17.38 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.73 Total: -48.03 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.38 -8.81 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130556305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.244 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds