Wall clock time and date at job start Mon Mar 30 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46896 * 110.99955 * 183.95614 * 12 2 1 14 14 C 1.46897 * 111.00012 * 59.99745 * 12 2 1 15 15 C 1.50701 * 109.47242 * 190.00433 * 14 12 2 16 16 C 1.37945 * 119.90160 * 260.00054 * 15 14 12 17 17 C 1.38269 * 120.26704 * 180.02562 * 16 15 14 18 18 C 1.38345 * 119.87892 * 0.15255 * 17 16 15 19 19 C 1.37874 * 120.08513 * 359.94873 * 18 17 16 20 20 C 1.39007 * 120.47727 * 359.51549 * 19 18 17 21 21 N 1.40040 * 110.94669 * 180.57359 * 20 19 18 22 22 C 1.47902 * 107.93532 * 341.86045 * 21 20 19 23 23 C 1.51571 * 131.57121 * 179.56957 * 19 18 17 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47833 * 59.99499 * 13 12 2 29 29 H 1.09009 * 109.46755 * 180.02562 * 13 12 2 30 30 H 1.09001 * 109.47104 * 299.98879 * 13 12 2 31 31 H 1.09009 * 109.46998 * 310.00024 * 14 12 2 32 32 H 1.09000 * 109.47347 * 70.00169 * 14 12 2 33 33 H 1.08005 * 119.87189 * 0.02796 * 16 15 14 34 34 H 1.07992 * 120.06004 * 180.17244 * 17 16 15 35 35 H 1.08003 * 119.95615 * 179.97438 * 18 17 16 36 36 H 1.00904 * 110.78206 * 103.58712 * 21 20 19 37 37 H 1.09005 * 110.77856 * 268.83554 * 22 21 20 38 38 H 1.09009 * 110.93637 * 145.48663 * 22 21 20 39 39 H 1.09000 * 110.74045 * 314.37433 * 23 19 18 40 40 H 1.09002 * 110.73687 * 77.51964 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8579 -0.8909 -3.6160 16 6 2.9585 -0.6127 -4.3997 17 6 3.2490 -1.4008 -5.4981 18 6 2.4310 -2.4707 -5.8144 19 6 1.3286 -2.7518 -5.0355 20 6 1.0342 -1.9723 -3.9229 21 7 -0.1149 -2.4405 -3.2735 22 6 -0.8528 -3.3047 -4.2201 23 6 0.2701 -3.8313 -5.1430 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.9033 -0.5281 4.4375 28 1 3.8030 -1.3531 -0.3068 29 1 3.8209 -1.3108 -2.0865 30 1 3.9187 0.2052 -1.1592 31 1 0.4721 0.1325 -2.3564 32 1 2.0518 0.9348 -2.5280 33 1 3.5959 0.2240 -4.1545 34 1 4.1130 -1.1816 -6.1078 35 1 2.6565 -3.0868 -6.6723 36 1 0.1287 -2.9472 -2.4356 37 1 -1.5796 -2.7238 -4.7881 38 1 -1.3412 -4.1271 -3.6972 39 1 -0.0851 -3.9229 -6.1694 40 1 0.6540 -4.7856 -4.7823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130556305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:23 Heat of formation + Delta-G solvation = 31.300103 kcal Electronic energy + Delta-G solvation = -19868.978562 eV Core-core repulsion = 17069.118349 eV Total energy + Delta-G solvation = -2799.860213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42149 -38.93436 -37.14013 -34.90379 -33.22467 -31.69526 -30.18058 -29.59414 -28.21759 -26.40129 -25.05000 -23.39027 -22.28102 -21.66267 -20.87790 -18.84044 -17.92416 -17.25284 -16.68718 -16.28534 -16.07629 -15.94752 -15.56269 -14.95426 -14.71339 -14.61668 -14.23366 -13.86372 -13.74533 -13.47533 -13.40739 -13.04359 -12.74414 -12.71375 -12.52604 -12.32004 -12.13635 -12.03814 -11.97455 -11.58068 -11.40934 -11.00777 -10.72078 -10.54602 -9.55223 -8.97188 -8.71670 -8.27224 -6.29651 0.46946 0.51470 1.30352 1.34888 1.44745 2.32194 2.76644 3.05029 3.07028 3.42058 3.74440 3.88979 4.08534 4.19054 4.24775 4.36227 4.43517 4.51232 4.56620 4.62650 4.67307 4.68698 4.75010 4.82192 4.89485 4.91254 4.99439 5.08161 5.09415 5.20160 5.29218 5.44186 5.57520 5.58592 5.65595 5.69453 5.91108 6.03275 6.24776 6.39785 6.42995 6.71080 6.77089 7.35083 8.88924 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.028167 B = 0.005659 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.831079 B = 4946.680309 C = 5363.081397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.186 3.814 3 H -0.015 1.015 4 C -0.502 4.502 5 H 0.044 0.956 6 C 0.015 3.985 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.265 1.265 10 H -0.299 1.299 11 H -0.256 1.256 12 N -0.524 5.524 13 C 0.045 3.955 14 C 0.095 3.905 15 C -0.088 4.088 16 C -0.108 4.108 17 C -0.138 4.138 18 C -0.095 4.095 19 C -0.164 4.164 20 C 0.100 3.900 21 N -0.643 5.643 22 C 0.051 3.949 23 C -0.103 4.103 24 H 0.032 0.968 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.265 0.735 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.013 0.987 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.128 0.872 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.357 0.643 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 -2.550 -20.789 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.078 3.922 3 H 0.003 0.997 4 C -0.541 4.541 5 H 0.062 0.938 6 C -0.183 4.183 7 N -0.588 5.588 8 Si 0.774 3.226 9 H -0.191 1.191 10 H -0.226 1.226 11 H -0.180 1.180 12 N -0.248 5.248 13 C -0.103 4.103 14 C -0.032 4.032 15 C -0.091 4.091 16 C -0.127 4.127 17 C -0.156 4.156 18 C -0.114 4.114 19 C -0.167 4.167 20 C 0.001 3.999 21 N -0.271 5.271 22 C -0.076 4.076 23 C -0.140 4.140 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.146 0.854 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.649 -2.474 -20.608 21.074 hybrid contribution 0.601 0.719 0.915 1.309 sum -3.047 -1.756 -19.694 20.005 Atomic orbital electron populations 1.22047 0.96744 1.01491 0.98987 1.19517 0.92738 0.91410 0.88557 0.99748 1.21196 1.30712 1.12303 0.89845 0.93793 1.25713 0.97358 0.99755 0.95428 1.70027 1.47848 1.42429 0.98486 0.85892 0.79490 0.80249 0.76961 1.19108 1.22642 1.17996 1.61876 1.10071 1.51943 1.00884 1.22134 0.87926 0.99015 1.01233 1.21008 1.00928 0.93438 0.87864 1.19332 0.96364 0.96077 0.97289 1.21030 0.95781 1.00502 0.95416 1.21259 1.00742 0.95910 0.97713 1.20665 0.93432 0.97708 0.99545 1.21356 0.98348 0.98133 0.98826 1.19440 0.90925 0.94565 0.94923 1.58306 1.19989 1.39782 1.09056 1.23107 0.95833 0.95542 0.93163 1.21712 0.93376 0.96481 1.02477 0.94949 0.92407 0.92391 0.92586 0.93239 0.91251 0.96863 0.90066 0.95256 0.85400 0.83417 0.84013 0.81726 0.89558 0.88243 0.88104 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.89 8.47 71.98 0.61 -5.28 16 2 C 0.19 8.89 1.65 44.17 0.07 8.96 16 3 H -0.01 -0.74 7.20 -2.39 -0.02 -0.76 16 4 C -0.50 -28.81 8.51 25.60 0.22 -28.59 16 5 H 0.04 2.80 6.64 -2.91 -0.02 2.78 16 6 C 0.01 0.86 5.45 84.65 0.46 1.32 16 7 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 8 Si 0.95 45.70 24.37 68.60 1.67 47.38 16 9 H -0.27 -12.17 6.87 99.48 0.68 -11.49 16 10 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 11 H -0.26 -11.67 6.53 99.48 0.65 -11.02 16 12 N -0.52 -21.85 4.61 -906.04 -4.18 -26.03 16 13 C 0.05 1.83 9.01 127.69 1.15 2.98 16 14 C 0.09 3.35 4.85 85.56 0.42 3.77 16 15 C -0.09 -2.73 4.61 -19.66 -0.09 -2.83 16 16 C -0.11 -2.86 8.58 22.21 0.19 -2.67 16 17 C -0.14 -3.01 10.06 22.30 0.22 -2.78 16 18 C -0.09 -2.04 10.03 22.21 0.22 -1.82 16 19 C -0.16 -4.00 6.23 -19.49 -0.12 -4.12 16 20 C 0.10 2.95 6.50 38.28 0.25 3.20 16 21 N -0.64 -18.04 7.12 -332.87 -2.37 -20.41 16 22 C 0.05 1.02 7.80 86.65 0.68 1.70 16 23 C -0.10 -1.88 7.03 30.67 0.22 -1.67 16 24 H 0.03 1.44 3.27 -2.39 -0.01 1.43 16 25 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.06 2.19 6.20 -2.38 -0.01 2.17 16 27 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.05 2.28 6.23 -2.39 -0.01 2.26 16 29 H 0.07 2.46 6.42 -2.38 -0.02 2.44 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 2.93 5.83 -2.38 -0.01 2.92 16 32 H 0.03 1.01 7.97 -2.39 -0.02 0.99 16 33 H 0.13 3.08 8.03 -2.91 -0.02 3.06 16 34 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 35 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.36 10.77 8.85 -89.69 -0.79 9.98 16 37 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -66.61 309.26 0.08 -66.53 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.17 Total: 19.51 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 4.49 Total: -27.82 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -6.25 Total: -105.59 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.67 Total: 47.38 kcal Total: -66.61 0.08 -66.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130556305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.825 kcal (2) G-P(sol) polarization free energy of solvation -66.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds