Wall clock time and date at job start Mon Mar 30 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46919 * 2 1 4 4 C 1.46905 * 110.99748 * 199.37966 * 3 2 1 5 5 C 1.50702 * 109.46854 * 72.18811 * 4 3 2 6 6 H 1.07995 * 120.00188 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00134 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99842 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00194 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47176 * 59.99994 * 9 7 5 11 11 H 1.48504 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47110 * 299.99971 * 9 7 5 13 13 C 1.46900 * 111.00240 * 75.43287 * 3 2 1 14 14 H 1.09006 * 110.26289 * 306.81060 * 13 3 2 15 15 C 1.54345 * 110.30601 * 68.87841 * 13 3 2 16 16 C 1.54351 * 102.39095 * 145.37194 * 15 13 3 17 17 H 1.08996 * 110.30108 * 214.72968 * 16 15 13 18 18 N 1.46899 * 110.29919 * 92.67803 * 16 15 13 19 19 C 1.51364 * 105.16765 * 333.65590 * 16 15 13 20 20 C 1.38495 * 130.38536 * 197.18506 * 19 16 15 21 21 C 1.38104 * 120.21592 * 180.02562 * 20 19 16 22 22 C 1.38255 * 119.93403 * 359.97438 * 21 20 19 23 23 C 1.38108 * 119.93271 * 0.02562 * 22 21 20 24 24 C 1.38214 * 109.76275 * 17.18708 * 19 16 15 25 25 H 1.09002 * 109.46876 * 54.90330 * 1 2 3 26 26 H 1.08994 * 109.46832 * 174.90339 * 1 2 3 27 27 H 1.09000 * 109.46909 * 294.90664 * 1 2 3 28 28 H 1.09001 * 109.47171 * 240.00460 * 2 1 3 29 29 H 1.08994 * 109.47218 * 119.99871 * 2 1 3 30 30 H 1.08999 * 109.46841 * 192.18441 * 4 3 2 31 31 H 1.08994 * 109.47427 * 312.18462 * 4 3 2 32 32 H 0.97003 * 120.00623 * 179.97438 * 8 7 5 33 33 H 1.09009 * 110.82017 * 27.14984 * 15 13 3 34 34 H 1.09002 * 110.82639 * 263.60032 * 15 13 3 35 35 H 1.00902 * 110.99752 * 181.37211 * 18 16 15 36 36 H 1.00899 * 110.99807 * 305.32766 * 18 16 15 37 37 H 1.07999 * 119.89758 * 0.02562 * 20 19 16 38 38 H 1.07999 * 120.03690 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.03650 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.88912 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4149 1.4501 -0.4551 5 6 3.4720 1.1904 -1.9385 6 1 2.5629 0.9960 -2.4881 7 6 4.6849 1.2010 -2.5940 8 7 5.7920 1.4382 -1.9249 9 14 4.7558 0.8784 -4.4326 10 1 3.9533 1.9040 -5.1464 11 1 6.1663 0.9443 -4.8927 12 1 4.2044 -0.4700 -4.7202 13 6 1.8699 1.9964 1.3273 14 1 0.8416 1.8967 1.6751 15 6 2.8408 1.3402 2.3318 16 6 3.2239 2.5248 3.2442 17 1 4.2607 2.4332 3.5677 18 7 2.3304 2.5807 4.4089 19 6 3.0487 3.7589 2.3855 20 6 3.5318 5.0458 2.5546 21 6 3.2383 6.0259 1.6270 22 6 2.4602 5.7222 0.5252 23 6 1.9776 4.4395 0.3549 24 6 2.2708 3.4553 1.2842 25 1 -0.3633 0.5909 -0.8408 26 1 -0.3633 -1.0236 -0.0913 27 1 -0.3633 0.4328 0.9321 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8202 2.4396 -0.2436 31 1 4.0034 0.6968 0.0686 32 1 6.6454 1.4453 -2.3859 33 1 3.7188 0.9453 1.8206 34 1 2.3388 0.5586 2.9020 35 1 2.5575 3.3652 5.0015 36 1 1.3637 2.6122 4.1218 37 1 4.1400 5.2838 3.4148 38 1 3.6162 7.0286 1.7619 39 1 2.2294 6.4875 -0.2010 40 1 1.3701 4.2030 -0.5062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132303335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:56 Heat of formation + Delta-G solvation = 29.918226 kcal Electronic energy + Delta-G solvation = -20167.243016 eV Core-core repulsion = 17367.322880 eV Total energy + Delta-G solvation = -2799.920136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23499 -36.99797 -35.26461 -32.63253 -31.67302 -30.09482 -29.57348 -28.28594 -26.56741 -24.56776 -22.38326 -22.32505 -21.37828 -20.29254 -18.72388 -16.71551 -16.21693 -15.78735 -15.07371 -14.77123 -14.53791 -14.45721 -13.93140 -13.80656 -13.24355 -12.89148 -12.72527 -12.41255 -12.36969 -12.04823 -11.47396 -11.44452 -11.22498 -10.99821 -10.93618 -10.72883 -10.66276 -10.33863 -10.26145 -10.13812 -9.74140 -9.20162 -8.84649 -8.42826 -8.33119 -8.12274 -7.20646 -5.98942 -3.99932 1.70450 1.81121 3.34231 3.38468 3.41193 4.11901 4.43591 4.66561 4.74561 5.01314 5.02403 5.31901 5.36011 5.38464 5.47250 5.54233 5.64372 5.79360 5.86237 5.95154 6.01083 6.10399 6.18134 6.23747 6.31552 6.36504 6.50747 6.59099 6.69211 6.78018 6.79094 6.89831 7.05506 7.21299 7.35520 7.39109 7.40526 7.50075 7.84418 8.15499 8.24122 8.57798 9.07616 9.63553 11.11350 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017476 B = 0.007467 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.825808 B = 3749.112251 C = 4457.635045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 N -0.525 5.525 4 C 0.194 3.806 5 C -0.505 4.505 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.118 3.882 14 H 0.082 0.918 15 C -0.151 4.151 16 C 0.135 3.865 17 H 0.084 0.916 18 N -0.831 5.831 19 C -0.143 4.143 20 C -0.107 4.107 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.080 4.080 24 C -0.056 4.056 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.023 0.977 30 H 0.034 0.966 31 H -0.008 1.008 32 H 0.261 0.739 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.337 0.663 36 H 0.339 0.661 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 4.593 9.391 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 N -0.248 5.248 4 C 0.070 3.930 5 C -0.544 4.544 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.009 3.991 14 H 0.099 0.901 15 C -0.191 4.191 16 C 0.023 3.977 17 H 0.102 0.898 18 N -0.358 5.358 19 C -0.146 4.146 20 C -0.126 4.126 21 C -0.147 4.147 22 C -0.139 4.139 23 C -0.099 4.099 24 C -0.057 4.057 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.010 0.990 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.342 4.121 9.222 12.487 hybrid contribution 0.539 0.454 -0.951 1.183 sum -6.803 4.575 8.272 11.646 Atomic orbital electron populations 1.21778 0.96641 1.00312 1.01319 1.21973 0.94263 0.90276 1.00932 1.62304 1.25465 1.16629 1.20395 1.19736 0.81379 0.96775 0.95151 1.21122 0.92750 1.47541 0.92999 0.92061 1.24968 0.95668 0.95631 0.98265 1.69951 0.97955 1.49848 1.35907 0.86611 0.76786 0.78759 0.85531 1.20263 1.21430 1.20337 1.21253 0.97805 0.89829 0.90228 0.90063 1.23098 1.01715 0.97148 0.97115 1.20795 0.97345 0.90857 0.88692 0.89783 1.59155 1.07464 1.50071 1.19146 1.21411 0.99371 0.95536 0.98264 1.20468 1.00333 0.92258 0.99522 1.20921 0.99732 0.98783 0.95270 1.21040 0.98591 0.96595 0.97656 1.20698 0.99339 0.91700 0.98132 1.20437 0.96305 0.95095 0.93910 0.92201 0.93425 0.93908 0.89898 0.95915 0.94790 0.98984 0.92981 0.89136 0.90426 0.85073 0.84934 0.87074 0.86573 0.86352 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.94 37.16 0.37 -1.82 16 2 C 0.05 1.01 5.44 -3.82 -0.02 0.99 16 3 N -0.52 -10.91 4.36 -228.22 -1.00 -11.91 16 4 C 0.19 4.96 3.73 -4.97 -0.02 4.94 16 5 C -0.51 -14.09 8.35 -34.44 -0.29 -14.38 16 6 H 0.06 1.70 7.70 -52.49 -0.40 1.29 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.12 2.10 2.85 -67.83 -0.19 1.91 16 14 H 0.08 1.33 6.83 -51.93 -0.35 0.97 16 15 C -0.15 -2.57 5.03 -25.32 -0.13 -2.70 16 16 C 0.13 2.05 4.00 -67.83 -0.27 1.78 16 17 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 18 N -0.83 -10.37 9.28 -4.77 -0.04 -10.42 16 19 C -0.14 -2.36 5.75 -104.21 -0.60 -2.96 16 20 C -0.11 -1.62 10.04 -39.54 -0.40 -2.02 16 21 C -0.13 -1.90 10.05 -39.62 -0.40 -2.30 16 22 C -0.12 -1.91 10.05 -39.62 -0.40 -2.31 16 23 C -0.08 -1.44 9.89 -39.53 -0.39 -1.84 16 24 C -0.06 -1.02 4.21 -104.21 -0.44 -1.46 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.60 7.01 -51.93 -0.36 0.24 16 28 H 0.08 1.74 7.06 -51.93 -0.37 1.37 16 29 H 0.02 0.41 7.04 -51.93 -0.37 0.04 16 30 H 0.03 0.96 6.61 -51.93 -0.34 0.61 16 31 H -0.01 -0.21 6.56 -51.93 -0.34 -0.55 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.09 1.81 5.78 -51.92 -0.30 1.51 16 34 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 35 H 0.34 3.64 9.07 -39.29 -0.36 3.28 16 36 H 0.34 4.04 8.98 -39.29 -0.35 3.69 16 37 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 318.21 15.07 4.80 4.80 Total: -1.00 -29.69 318.21 -9.86 -39.54 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.06 Total: 7.92 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -3.27 Total: -20.67 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.30 Total: -48.34 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.69 -9.86 -39.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132303335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.463 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds