Wall clock time and date at job start Mon Mar 30 2020 06:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46919 * 2 1 4 4 C 1.46905 * 110.99748 * 199.37966 * 3 2 1 5 5 C 1.50702 * 109.46854 * 72.18811 * 4 3 2 6 6 H 1.07995 * 120.00188 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00134 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99842 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00194 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47176 * 59.99994 * 9 7 5 11 11 H 1.48504 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47110 * 299.99971 * 9 7 5 13 13 C 1.46900 * 111.00240 * 75.43287 * 3 2 1 14 14 H 1.09006 * 110.26289 * 306.81060 * 13 3 2 15 15 C 1.54345 * 110.30601 * 68.87841 * 13 3 2 16 16 C 1.54351 * 102.39095 * 145.37194 * 15 13 3 17 17 H 1.08996 * 110.30108 * 214.72968 * 16 15 13 18 18 N 1.46899 * 110.29919 * 92.67803 * 16 15 13 19 19 C 1.51364 * 105.16765 * 333.65590 * 16 15 13 20 20 C 1.38495 * 130.38536 * 197.18506 * 19 16 15 21 21 C 1.38104 * 120.21592 * 180.02562 * 20 19 16 22 22 C 1.38255 * 119.93403 * 359.97438 * 21 20 19 23 23 C 1.38108 * 119.93271 * 0.02562 * 22 21 20 24 24 C 1.38214 * 109.76275 * 17.18708 * 19 16 15 25 25 H 1.09002 * 109.46876 * 54.90330 * 1 2 3 26 26 H 1.08994 * 109.46832 * 174.90339 * 1 2 3 27 27 H 1.09000 * 109.46909 * 294.90664 * 1 2 3 28 28 H 1.09001 * 109.47171 * 240.00460 * 2 1 3 29 29 H 1.08994 * 109.47218 * 119.99871 * 2 1 3 30 30 H 1.08999 * 109.46841 * 192.18441 * 4 3 2 31 31 H 1.08994 * 109.47427 * 312.18462 * 4 3 2 32 32 H 0.97003 * 120.00623 * 179.97438 * 8 7 5 33 33 H 1.09009 * 110.82017 * 27.14984 * 15 13 3 34 34 H 1.09002 * 110.82639 * 263.60032 * 15 13 3 35 35 H 1.00902 * 110.99752 * 181.37211 * 18 16 15 36 36 H 1.00899 * 110.99807 * 305.32766 * 18 16 15 37 37 H 1.07999 * 119.89758 * 0.02562 * 20 19 16 38 38 H 1.07999 * 120.03690 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.03650 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.88912 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4149 1.4501 -0.4551 5 6 3.4720 1.1904 -1.9385 6 1 2.5629 0.9960 -2.4881 7 6 4.6849 1.2010 -2.5940 8 7 5.7920 1.4382 -1.9249 9 14 4.7558 0.8784 -4.4326 10 1 3.9533 1.9040 -5.1464 11 1 6.1663 0.9443 -4.8927 12 1 4.2044 -0.4700 -4.7202 13 6 1.8699 1.9964 1.3273 14 1 0.8416 1.8967 1.6751 15 6 2.8408 1.3402 2.3318 16 6 3.2239 2.5248 3.2442 17 1 4.2607 2.4332 3.5677 18 7 2.3304 2.5807 4.4089 19 6 3.0487 3.7589 2.3855 20 6 3.5318 5.0458 2.5546 21 6 3.2383 6.0259 1.6270 22 6 2.4602 5.7222 0.5252 23 6 1.9776 4.4395 0.3549 24 6 2.2708 3.4553 1.2842 25 1 -0.3633 0.5909 -0.8408 26 1 -0.3633 -1.0236 -0.0913 27 1 -0.3633 0.4328 0.9321 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8202 2.4396 -0.2436 31 1 4.0034 0.6968 0.0686 32 1 6.6454 1.4453 -2.3859 33 1 3.7188 0.9453 1.8206 34 1 2.3388 0.5586 2.9020 35 1 2.5575 3.3652 5.0015 36 1 1.3637 2.6122 4.1218 37 1 4.1400 5.2838 3.4148 38 1 3.6162 7.0286 1.7619 39 1 2.2294 6.4875 -0.2010 40 1 1.3701 4.2030 -0.5062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132303335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:55 Heat of formation + Delta-G solvation = 10.326237 kcal Electronic energy + Delta-G solvation = -20168.092588 eV Core-core repulsion = 17367.322880 eV Total energy + Delta-G solvation = -2800.769708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56958 -38.46775 -36.59103 -34.74043 -32.95473 -31.29077 -31.19086 -29.70889 -28.28343 -26.09328 -24.24126 -23.62219 -22.81107 -21.54008 -20.23127 -18.66176 -17.55165 -17.24442 -16.63305 -16.20221 -15.99888 -15.94429 -15.32384 -15.22896 -14.73449 -14.38011 -14.19431 -13.99472 -13.70684 -13.67748 -12.95944 -12.92367 -12.75891 -12.65137 -12.50530 -12.28655 -12.08715 -12.02434 -11.93292 -11.60626 -11.40226 -11.26976 -10.57986 -9.98021 -9.59952 -9.37275 -8.92021 -8.17485 -6.26967 0.45018 0.54311 1.38682 1.41506 1.49284 2.39797 2.85481 3.13890 3.24686 3.53989 3.61231 3.79749 4.06538 4.14433 4.19274 4.24125 4.31685 4.39491 4.55325 4.65682 4.70903 4.79590 4.82562 4.93371 4.96748 5.07748 5.12712 5.18372 5.26234 5.28034 5.40161 5.49957 5.56546 5.64756 5.67421 5.78024 6.10226 6.14131 6.16697 6.43478 6.56040 6.69142 6.89969 7.41885 8.92250 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017476 B = 0.007467 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.825808 B = 3749.112251 C = 4457.635045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.052 3.948 3 N -0.530 5.530 4 C 0.221 3.779 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.120 3.880 14 H 0.101 0.899 15 C -0.145 4.145 16 C 0.144 3.856 17 H 0.080 0.920 18 N -0.822 5.822 19 C -0.151 4.151 20 C -0.111 4.111 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.106 4.106 24 C -0.084 4.084 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.028 0.972 30 H 0.003 0.997 31 H -0.039 1.039 32 H 0.262 0.738 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.351 0.649 36 H 0.345 0.655 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.139 0.861 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 5.322 10.034 14.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 N -0.253 5.253 4 C 0.095 3.905 5 C -0.559 4.559 6 H 0.077 0.923 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.788 3.212 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.011 3.989 14 H 0.119 0.881 15 C -0.184 4.184 16 C 0.032 3.968 17 H 0.098 0.902 18 N -0.350 5.350 19 C -0.154 4.154 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.125 4.125 24 C -0.085 4.085 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.021 0.979 31 H -0.021 1.021 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.303 4.850 9.883 13.789 hybrid contribution 0.818 0.259 -1.090 1.387 sum -7.486 5.109 8.794 12.628 Atomic orbital electron populations 1.21676 0.93376 1.01909 1.01858 1.22014 0.96813 0.88952 0.99820 1.62219 1.22221 1.18012 1.22850 1.19214 0.83603 0.93751 0.93905 1.21462 0.92789 1.47306 0.94354 0.92345 1.25849 0.95231 0.95273 1.03149 1.70088 0.98497 1.50867 1.37851 0.85533 0.76981 0.79056 0.79632 1.19525 1.20930 1.19271 1.21332 0.98961 0.89881 0.88697 0.88116 1.22943 1.00045 0.98217 0.97242 1.20594 0.97646 0.89499 0.89026 0.90224 1.59082 1.07348 1.50823 1.17768 1.21639 0.99147 0.96605 0.98008 1.20859 0.99945 0.91673 1.00463 1.21340 0.98560 1.00267 0.94276 1.21345 0.98384 0.96179 0.98646 1.20785 1.00497 0.93067 0.98105 1.20576 0.97769 0.95112 0.95026 0.93016 0.91039 0.92208 0.92706 0.95381 0.97905 1.02098 0.92923 0.92896 0.88998 0.83555 0.84267 0.84344 0.83260 0.84298 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.94 71.98 0.72 -3.11 16 2 C 0.05 1.98 5.44 86.30 0.47 2.45 16 3 N -0.53 -22.71 4.36 -875.97 -3.82 -26.53 16 4 C 0.22 11.86 3.73 85.56 0.32 12.18 16 5 C -0.52 -30.00 8.35 25.60 0.21 -29.79 16 6 H 0.06 3.32 7.70 -2.91 -0.02 3.30 16 7 C 0.00 0.17 5.46 84.66 0.46 0.63 16 8 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 9 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 C 0.12 4.30 2.85 44.84 0.13 4.43 16 14 H 0.10 3.18 6.83 -2.38 -0.02 3.16 16 15 C -0.15 -4.99 5.03 31.51 0.16 -4.83 16 16 C 0.14 4.31 4.00 44.84 0.18 4.49 16 17 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 18 N -0.82 -18.84 9.28 -169.00 -1.57 -20.41 16 19 C -0.15 -4.89 5.75 -19.60 -0.11 -5.00 16 20 C -0.11 -3.14 10.04 22.30 0.22 -2.92 16 21 C -0.13 -3.46 10.05 22.24 0.22 -3.24 16 22 C -0.13 -3.92 10.05 22.24 0.22 -3.70 16 23 C -0.11 -3.88 9.89 22.30 0.22 -3.66 16 24 C -0.08 -3.06 4.21 -19.60 -0.08 -3.14 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.55 7.01 -2.39 -0.02 1.53 16 28 H 0.05 2.37 7.06 -2.39 -0.02 2.35 16 29 H 0.03 1.03 7.04 -2.39 -0.02 1.01 16 30 H 0.00 0.17 6.61 -2.39 -0.02 0.15 16 31 H -0.04 -2.26 6.56 -2.39 -0.02 -2.28 16 32 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.05 2.23 5.78 -2.38 -0.01 2.22 16 34 H 0.09 2.83 8.03 -2.39 -0.02 2.81 16 35 H 0.35 6.66 9.07 -89.69 -0.81 5.84 16 36 H 0.34 7.44 8.98 -89.69 -0.81 6.64 16 37 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 38 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 40 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -66.03 318.21 -0.31 -66.34 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.57 Total: 25.50 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 3.34 Total: -35.21 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -5.11 Total: -103.83 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -66.03 -0.31 -66.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132303335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.664 kcal (2) G-P(sol) polarization free energy of solvation -66.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds