Wall clock time and date at job start Mon Mar 30 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.53178 * 2 1 4 4 C 1.53500 * 109.53120 * 120.15030 * 2 1 3 5 5 N 1.47272 * 107.24054 * 181.61999 * 4 2 1 6 6 C 1.40473 * 117.64215 * 318.90907 * 5 4 2 7 7 C 1.38654 * 119.48198 * 191.48296 * 6 5 4 8 8 C 1.38264 * 120.00830 * 180.28256 * 7 6 5 9 9 C 1.38259 * 119.98149 * 359.97438 * 8 7 6 10 10 C 1.38115 * 120.29403 * 359.88453 * 9 8 7 11 11 C 1.39087 * 120.21914 * 0.02562 * 10 9 8 12 12 N 1.39734 * 118.85467 * 180.55839 * 11 10 9 13 13 C 1.46895 * 111.00899 * 77.30621 * 12 11 10 14 14 C 1.53004 * 109.46802 * 290.12360 * 13 12 11 15 15 C 1.53005 * 109.46885 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.46892 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00497 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99941 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99842 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00239 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46696 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47121 * 119.99666 * 20 18 16 23 23 H 1.48503 * 109.47128 * 239.99809 * 20 18 16 24 24 H 1.09001 * 109.47061 * 309.15881 * 1 2 3 25 25 H 1.09003 * 109.46990 * 189.15505 * 1 2 3 26 26 H 1.09000 * 109.46872 * 69.15935 * 1 2 3 27 27 H 1.09001 * 109.90183 * 301.04936 * 4 2 1 28 28 H 1.08997 * 109.90412 * 62.18661 * 4 2 1 29 29 H 0.96995 * 121.17855 * 138.92003 * 5 4 2 30 30 H 1.08003 * 119.99484 * 0.26253 * 7 6 5 31 31 H 1.08006 * 120.01328 * 180.02562 * 8 7 6 32 32 H 1.07997 * 119.85150 * 179.85986 * 9 8 7 33 33 H 1.08004 * 119.89158 * 179.97438 * 10 9 8 34 34 H 1.08998 * 109.47194 * 50.11958 * 13 12 11 35 35 H 1.09001 * 109.47396 * 170.12375 * 13 12 11 36 36 H 1.08993 * 109.47039 * 299.99335 * 14 13 12 37 37 H 1.09001 * 109.47133 * 59.99854 * 14 13 12 38 38 H 1.09002 * 109.47052 * 300.00169 * 15 14 13 39 39 H 1.09001 * 109.47223 * 60.00071 * 15 14 13 40 40 H 0.96998 * 119.99426 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0432 -0.7266 1.2510 5 7 3.5143 -0.6628 1.2202 6 6 4.1494 -0.8601 -0.0171 7 6 5.5227 -1.0471 -0.0570 8 6 6.1598 -1.2365 -1.2694 9 6 5.4271 -1.2399 -2.4419 10 6 4.0585 -1.0570 -2.4087 11 6 3.4068 -0.8675 -1.1946 12 7 2.0199 -0.6970 -1.1932 13 6 1.3312 -1.9819 -1.3735 14 6 1.5508 -2.4821 -2.8027 15 6 0.8340 -3.8208 -2.9903 16 6 1.0509 -4.3137 -4.3977 17 1 1.6412 -3.7307 -5.0892 18 6 0.4955 -5.5089 -4.8028 19 7 -0.2230 -6.2191 -3.9607 20 14 0.7637 -6.1197 -6.5477 21 1 1.6014 -5.1439 -7.2903 22 1 1.4504 -7.4358 -6.5114 23 1 -0.5481 -6.2643 -7.2286 24 1 -0.3633 0.6489 0.7969 25 1 -0.3633 -1.0146 0.1635 26 1 -0.3633 0.3656 -0.9604 27 1 1.6691 -0.2318 2.1472 28 1 1.7166 -1.7664 1.2363 29 1 4.0264 -0.4907 2.0258 30 1 6.0948 -1.0446 0.8590 31 1 7.2295 -1.3826 -1.3006 32 1 5.9272 -1.3857 -3.3879 33 1 3.4926 -1.0604 -3.3285 34 1 1.7309 -2.7105 -0.6682 35 1 0.2641 -1.8505 -1.1945 36 1 1.1511 -1.7536 -3.5080 37 1 2.6180 -2.6135 -2.9817 38 1 1.2341 -4.5491 -2.2849 39 1 -0.2331 -3.6897 -2.8112 40 1 -0.6140 -7.0597 -4.2459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133660030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:11 Heat of formation + Delta-G solvation = 32.383788 kcal Electronic energy + Delta-G solvation = -19713.227246 eV Core-core repulsion = 16913.414025 eV Total energy + Delta-G solvation = -2799.813221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57321 -37.16994 -35.33712 -33.48586 -31.99967 -31.09473 -29.81499 -27.86918 -26.61414 -25.00435 -23.10320 -22.24870 -21.94487 -20.33231 -18.82710 -17.27550 -16.74545 -16.26879 -15.71121 -15.03520 -14.71879 -14.38695 -14.10813 -14.04807 -13.78109 -13.35769 -12.89377 -12.33287 -12.29698 -12.28787 -11.93864 -11.70048 -11.30510 -11.22925 -11.05774 -10.97410 -10.72872 -10.46463 -10.27117 -10.03129 -9.53098 -9.27164 -9.08030 -8.82145 -8.29943 -7.79145 -7.19026 -5.95553 -3.96973 1.67031 1.84057 3.34395 3.41639 3.43128 3.46451 3.94907 4.16289 4.50785 4.77959 4.98793 5.04259 5.16183 5.28726 5.38164 5.40596 5.55224 5.55384 5.63097 5.71251 5.80084 5.87319 5.96511 6.02926 6.13842 6.29699 6.37345 6.44558 6.57898 6.75546 6.84141 6.87602 6.99345 7.19532 7.30295 7.36081 7.72786 7.73351 7.83360 7.89644 8.05218 8.49045 9.10305 9.66803 11.16082 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020910 B = 0.005502 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.745930 B = 5088.208293 C = 5989.742469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.085 0.915 4 C 0.091 3.909 5 N -0.757 5.757 6 C 0.169 3.831 7 C -0.182 4.182 8 C -0.096 4.096 9 C -0.160 4.160 10 C -0.069 4.069 11 C 0.046 3.954 12 N -0.489 5.489 13 C 0.053 3.947 14 C -0.112 4.112 15 C 0.023 3.977 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.399 0.601 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.134 0.866 34 H 0.031 0.969 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.012 0.988 39 H 0.014 0.986 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.136 13.091 10.895 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.040 4.040 3 H 0.103 0.897 4 C -0.036 4.036 5 N -0.390 5.390 6 C 0.065 3.935 7 C -0.204 4.204 8 C -0.115 4.115 9 C -0.180 4.180 10 C -0.089 4.089 11 C -0.053 4.053 12 N -0.206 5.206 13 C -0.071 4.071 14 C -0.149 4.149 15 C -0.014 4.014 16 C -0.553 4.553 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.234 0.766 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.152 0.848 34 H 0.050 0.950 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.032 0.968 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.672 13.207 10.505 18.147 hybrid contribution 0.481 -0.909 0.150 1.040 sum 7.153 12.298 10.655 17.775 Atomic orbital electron populations 1.21923 0.93327 1.02523 1.02918 1.22065 0.95991 0.98198 0.87699 0.89681 1.22274 0.80904 1.00752 0.99675 1.44696 1.05342 1.81824 1.07161 1.18037 0.92170 0.97658 0.85590 1.20410 0.92329 1.09448 0.98259 1.20803 0.99162 0.99456 0.92085 1.20832 0.93846 1.05208 0.98120 1.21068 0.93861 0.97074 0.96904 1.18261 0.88709 1.06766 0.91602 1.58948 1.02315 1.22669 1.36695 1.22522 0.98282 0.86630 0.99670 1.21880 1.01214 0.99257 0.92596 1.19060 0.95266 0.90363 0.96748 1.21281 1.31570 1.05102 0.97320 0.92603 1.25027 0.95319 0.96854 0.97338 1.69982 1.34620 1.14299 1.34822 0.86557 0.77880 0.78722 0.84993 1.19683 1.21080 1.21069 0.92058 0.91699 0.90864 0.90254 0.92183 0.76561 0.86817 0.86564 0.86298 0.84837 0.95025 0.90075 0.92676 0.92388 0.96930 0.96759 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.26 37.16 0.31 -1.35 16 2 C 0.07 0.90 2.97 -67.61 -0.20 0.70 16 3 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.09 1.06 6.38 -3.36 -0.02 1.04 16 5 N -0.76 -9.25 5.93 -57.61 -0.34 -9.59 16 6 C 0.17 2.50 6.48 -83.38 -0.54 1.96 16 7 C -0.18 -2.44 9.90 -39.42 -0.39 -2.83 16 8 C -0.10 -1.27 10.05 -39.56 -0.40 -1.67 16 9 C -0.16 -2.33 10.03 -39.62 -0.40 -2.73 16 10 C -0.07 -1.14 7.82 -39.31 -0.31 -1.45 16 11 C 0.05 0.77 5.02 -83.58 -0.42 0.35 16 12 N -0.49 -7.86 4.44 -163.32 -0.72 -8.58 16 13 C 0.05 0.96 4.14 -3.82 -0.02 0.95 16 14 C -0.11 -2.39 4.39 -26.73 -0.12 -2.51 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.51 -14.82 9.11 -34.44 -0.31 -15.13 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 19 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.76 6.54 -51.93 -0.34 0.42 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.79 7.05 -51.93 -0.37 0.43 16 29 H 0.40 3.87 8.89 -40.82 -0.36 3.50 16 30 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 31 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.13 2.28 6.55 -52.48 -0.34 1.93 16 34 H 0.03 0.61 7.29 -51.93 -0.38 0.23 16 35 H 0.08 1.39 5.42 -51.93 -0.28 1.11 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.25 5.26 -51.93 -0.27 0.98 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 313.68 15.07 4.73 4.73 Total: -1.00 -31.53 313.68 -9.79 -41.32 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.11 Total: 2.50 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -3.05 Total: -20.71 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.33 Total: -44.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.53 -9.79 -41.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133660030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.703 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds