Wall clock time and date at job start Mon Mar 30 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.53178 * 2 1 4 4 C 1.53500 * 109.53120 * 120.15030 * 2 1 3 5 5 N 1.47272 * 107.24054 * 181.61999 * 4 2 1 6 6 C 1.40473 * 117.64215 * 318.90907 * 5 4 2 7 7 C 1.38654 * 119.48198 * 191.48296 * 6 5 4 8 8 C 1.38264 * 120.00830 * 180.28256 * 7 6 5 9 9 C 1.38259 * 119.98149 * 359.97438 * 8 7 6 10 10 C 1.38115 * 120.29403 * 359.88453 * 9 8 7 11 11 C 1.39087 * 120.21914 * 0.02562 * 10 9 8 12 12 N 1.39734 * 118.85467 * 180.55839 * 11 10 9 13 13 C 1.46895 * 111.00899 * 77.30621 * 12 11 10 14 14 C 1.53004 * 109.46802 * 290.12360 * 13 12 11 15 15 C 1.53005 * 109.46885 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.46892 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00497 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99941 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99842 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00239 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46696 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47121 * 119.99666 * 20 18 16 23 23 H 1.48503 * 109.47128 * 239.99809 * 20 18 16 24 24 H 1.09001 * 109.47061 * 309.15881 * 1 2 3 25 25 H 1.09003 * 109.46990 * 189.15505 * 1 2 3 26 26 H 1.09000 * 109.46872 * 69.15935 * 1 2 3 27 27 H 1.09001 * 109.90183 * 301.04936 * 4 2 1 28 28 H 1.08997 * 109.90412 * 62.18661 * 4 2 1 29 29 H 0.96995 * 121.17855 * 138.92003 * 5 4 2 30 30 H 1.08003 * 119.99484 * 0.26253 * 7 6 5 31 31 H 1.08006 * 120.01328 * 180.02562 * 8 7 6 32 32 H 1.07997 * 119.85150 * 179.85986 * 9 8 7 33 33 H 1.08004 * 119.89158 * 179.97438 * 10 9 8 34 34 H 1.08998 * 109.47194 * 50.11958 * 13 12 11 35 35 H 1.09001 * 109.47396 * 170.12375 * 13 12 11 36 36 H 1.08993 * 109.47039 * 299.99335 * 14 13 12 37 37 H 1.09001 * 109.47133 * 59.99854 * 14 13 12 38 38 H 1.09002 * 109.47052 * 300.00169 * 15 14 13 39 39 H 1.09001 * 109.47223 * 60.00071 * 15 14 13 40 40 H 0.96998 * 119.99426 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0432 -0.7266 1.2510 5 7 3.5143 -0.6628 1.2202 6 6 4.1494 -0.8601 -0.0171 7 6 5.5227 -1.0471 -0.0570 8 6 6.1598 -1.2365 -1.2694 9 6 5.4271 -1.2399 -2.4419 10 6 4.0585 -1.0570 -2.4087 11 6 3.4068 -0.8675 -1.1946 12 7 2.0199 -0.6970 -1.1932 13 6 1.3312 -1.9819 -1.3735 14 6 1.5508 -2.4821 -2.8027 15 6 0.8340 -3.8208 -2.9903 16 6 1.0509 -4.3137 -4.3977 17 1 1.6412 -3.7307 -5.0892 18 6 0.4955 -5.5089 -4.8028 19 7 -0.2230 -6.2191 -3.9607 20 14 0.7637 -6.1197 -6.5477 21 1 1.6014 -5.1439 -7.2903 22 1 1.4504 -7.4358 -6.5114 23 1 -0.5481 -6.2643 -7.2286 24 1 -0.3633 0.6489 0.7969 25 1 -0.3633 -1.0146 0.1635 26 1 -0.3633 0.3656 -0.9604 27 1 1.6691 -0.2318 2.1472 28 1 1.7166 -1.7664 1.2363 29 1 4.0264 -0.4907 2.0258 30 1 6.0948 -1.0446 0.8590 31 1 7.2295 -1.3826 -1.3006 32 1 5.9272 -1.3857 -3.3879 33 1 3.4926 -1.0604 -3.3285 34 1 1.7309 -2.7105 -0.6682 35 1 0.2641 -1.8505 -1.1945 36 1 1.1511 -1.7536 -3.5080 37 1 2.6180 -2.6135 -2.9817 38 1 1.2341 -4.5491 -2.2849 39 1 -0.2331 -3.6897 -2.8112 40 1 -0.6140 -7.0597 -4.2459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133660030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:10 Heat of formation + Delta-G solvation = 12.808429 kcal Electronic energy + Delta-G solvation = -19714.076097 eV Core-core repulsion = 16913.414025 eV Total energy + Delta-G solvation = -2800.662072 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70413 -38.28601 -36.68864 -35.34326 -33.44447 -32.61681 -30.93174 -29.25070 -28.12264 -26.24317 -24.82082 -23.39719 -23.03105 -22.13812 -20.01242 -18.49807 -18.34996 -17.77673 -16.94719 -16.54259 -16.13710 -16.03942 -15.26793 -15.24426 -14.88648 -14.51257 -14.33587 -14.15898 -13.73311 -13.37258 -13.28864 -13.08921 -12.86249 -12.59806 -12.51080 -12.34248 -12.14030 -12.11350 -11.89467 -11.40817 -11.27044 -11.12501 -10.96569 -10.55374 -10.06182 -8.97047 -8.26550 -8.19885 -6.30624 0.53115 0.71549 1.39781 1.40079 1.53940 2.40771 2.47605 2.78777 3.05327 3.13154 3.79962 3.94385 3.99913 4.15704 4.21802 4.30644 4.37631 4.50225 4.58946 4.59871 4.65895 4.67105 4.71606 4.81425 4.95146 5.02103 5.09919 5.18194 5.26788 5.28577 5.37021 5.49399 5.52852 5.73554 5.76807 5.85292 5.88396 6.07556 6.21220 6.27815 6.61448 6.85537 6.91731 7.38401 8.92332 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020910 B = 0.005502 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.745930 B = 5088.208293 C = 5989.742469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 H 0.089 0.911 4 C 0.092 3.908 5 N -0.750 5.750 6 C 0.160 3.840 7 C -0.183 4.183 8 C -0.092 4.092 9 C -0.172 4.172 10 C -0.092 4.092 11 C 0.017 3.983 12 N -0.496 5.496 13 C 0.070 3.930 14 C -0.095 4.095 15 C 0.030 3.970 16 C -0.539 4.539 17 H 0.058 0.942 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.276 1.276 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.042 0.958 29 H 0.413 0.587 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.015 0.985 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.054 0.946 38 H -0.016 1.016 39 H -0.006 1.006 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.304 13.972 11.557 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 H 0.108 0.892 4 C -0.034 4.034 5 N -0.384 5.384 6 C 0.056 3.944 7 C -0.206 4.206 8 C -0.111 4.111 9 C -0.192 4.192 10 C -0.113 4.113 11 C -0.083 4.083 12 N -0.214 5.214 13 C -0.055 4.055 14 C -0.133 4.133 15 C -0.008 4.008 16 C -0.577 4.577 17 H 0.076 0.924 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.201 1.201 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.060 0.940 29 H 0.251 0.749 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.133 0.867 34 H 0.033 0.967 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.003 0.997 39 H 0.012 0.988 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.850 14.112 11.197 19.651 hybrid contribution 0.158 -1.162 -0.003 1.172 sum 8.008 12.951 11.194 18.898 Atomic orbital electron populations 1.21899 0.92125 1.02671 1.03530 1.22206 0.96980 0.97958 0.87009 0.89247 1.22298 0.80653 0.99911 1.00550 1.44714 1.05681 1.81133 1.06870 1.18230 0.92896 0.97308 0.86007 1.20794 0.91987 1.08283 0.99528 1.21187 1.00656 0.97842 0.91431 1.21070 0.93280 1.05283 0.99568 1.21114 0.94929 0.98661 0.96548 1.18441 0.88910 1.08516 0.92388 1.58853 1.02429 1.21109 1.38995 1.22182 0.98918 0.87652 0.96722 1.21617 1.00117 0.96542 0.95035 1.18932 0.94295 0.92241 0.95296 1.21681 1.31878 1.05741 0.98394 0.92401 1.25980 0.94759 0.96946 1.02110 1.70107 1.35393 1.14816 1.37146 0.85402 0.78206 0.78257 0.79226 1.18636 1.20326 1.20149 0.88889 0.92561 0.91980 0.86573 0.94019 0.74898 0.84015 0.83499 0.85026 0.86657 0.96687 0.89392 0.92954 0.92764 0.99738 0.98790 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.26 71.98 0.59 -2.45 16 2 C 0.07 1.65 2.97 45.14 0.13 1.78 16 3 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.09 1.98 6.38 86.40 0.55 2.53 16 5 N -0.75 -16.72 5.93 -336.16 -1.99 -18.72 16 6 C 0.16 4.52 6.48 38.09 0.25 4.77 16 7 C -0.18 -4.51 9.90 22.38 0.22 -4.28 16 8 C -0.09 -2.26 10.05 22.28 0.22 -2.04 16 9 C -0.17 -4.93 10.03 22.25 0.22 -4.71 16 10 C -0.09 -3.13 7.82 22.44 0.18 -2.95 16 11 C 0.02 0.57 5.02 38.32 0.19 0.76 16 12 N -0.50 -16.11 4.44 -670.62 -2.97 -19.08 16 13 C 0.07 2.64 4.14 86.31 0.36 3.00 16 14 C -0.10 -4.26 4.39 30.60 0.13 -4.13 16 15 C 0.03 1.66 4.97 29.85 0.15 1.80 16 16 C -0.54 -31.87 9.11 25.60 0.23 -31.63 16 17 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 18 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 19 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 20 Si 0.96 45.38 29.54 68.60 2.03 47.40 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.28 6.54 -2.39 -0.02 1.26 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.07 7.05 -2.39 -0.02 1.05 16 29 H 0.41 6.78 8.89 -92.71 -0.82 5.96 16 30 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 33 H 0.12 4.17 6.55 -2.91 -0.02 4.15 16 34 H 0.01 0.60 7.29 -2.39 -0.02 0.58 16 35 H 0.09 3.12 5.42 -2.39 -0.01 3.11 16 36 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.05 2.46 5.26 -2.39 -0.01 2.44 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -69.36 313.68 1.44 -67.92 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.20 Total: 17.41 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 3.90 Total: -37.11 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -4.68 Total: -95.62 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -69.36 1.44 -67.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133660030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.725 kcal (2) G-P(sol) polarization free energy of solvation -69.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds