Wall clock time and date at job start Mon Mar 30 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47515 * 2 1 4 4 N 1.46502 * 109.47338 * 119.99981 * 2 1 3 5 5 C 1.46499 * 120.00006 * 301.39742 * 4 2 1 6 6 C 1.50696 * 109.47124 * 270.00039 * 5 4 2 7 7 H 1.08003 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00101 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00287 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47048 * 59.99619 * 10 8 6 12 12 H 1.48500 * 109.47034 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46934 * 299.99799 * 10 8 6 14 14 C 1.38997 * 120.00360 * 121.39364 * 4 2 1 15 15 C 1.39147 * 119.69227 * 349.03560 * 14 4 2 16 16 C 1.38228 * 118.92183 * 179.97438 * 15 14 4 17 17 C 1.38988 * 118.67635 * 0.02562 * 16 15 14 18 18 C 1.38031 * 119.48471 * 359.97438 * 17 16 15 19 19 N 1.32219 * 119.69759 * 169.05654 * 14 4 2 20 20 C 1.51489 * 109.61435 * 179.97438 * 18 17 16 21 21 C 1.54593 * 105.22728 * 17.22938 * 20 18 17 22 22 C 1.51254 * 130.55694 * 180.02562 * 17 16 15 23 23 H 1.09009 * 109.47129 * 300.00333 * 1 2 3 24 24 H 1.08995 * 109.47217 * 59.99711 * 1 2 3 25 25 H 1.09000 * 109.47519 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47257 * 239.99951 * 2 1 3 27 27 H 1.09002 * 109.47472 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47067 * 300.00486 * 3 2 1 29 29 H 1.09000 * 109.47367 * 59.99858 * 3 2 1 30 30 H 1.09010 * 109.47171 * 29.99549 * 5 4 2 31 31 H 1.09000 * 109.47706 * 149.99328 * 5 4 2 32 32 H 0.96997 * 120.00145 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.53817 * 359.96948 * 15 14 4 34 34 H 1.07995 * 120.66391 * 179.97438 * 16 15 14 35 35 H 1.09002 * 110.29488 * 136.14301 * 20 18 17 36 36 H 1.08995 * 110.29789 * 258.18300 * 20 18 17 37 37 H 1.09002 * 110.91309 * 215.45908 * 21 20 18 38 38 H 1.09003 * 110.86243 * 91.80915 * 21 20 18 39 39 H 1.09006 * 110.31445 * 281.75973 * 22 17 16 40 40 H 1.09000 * 110.31539 * 43.83535 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6394 -0.2082 2.5265 6 6 2.6528 0.8004 3.0027 7 1 3.4952 1.0562 2.3771 8 6 2.5046 1.3966 4.2370 9 7 1.4785 1.0856 4.9987 10 14 3.7612 2.6463 4.8275 11 1 3.8059 3.7889 3.8801 12 1 3.3770 3.1354 6.1760 13 1 5.1001 2.0075 4.8961 14 6 2.8412 -1.8036 1.0689 15 6 3.0131 -2.3946 -0.1790 16 6 3.8354 -3.5004 -0.2874 17 6 4.4604 -3.9815 0.8569 18 6 4.2472 -3.3482 2.0647 19 7 3.4531 -2.2911 2.1348 20 6 5.0301 -4.0529 3.1535 21 6 6.0814 -4.9077 2.4093 22 6 5.3997 -5.1519 1.0463 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.6563 0.2602 2.4768 31 1 1.6072 -1.0471 3.2218 32 1 1.3745 1.5048 5.8671 33 1 2.5121 -1.9959 -1.0487 34 1 3.9884 -3.9815 -1.2421 35 1 5.5228 -3.3240 3.7970 36 1 4.3699 -4.6904 3.7417 37 1 6.2563 -5.8494 2.9298 38 1 7.0123 -4.3548 2.2830 39 1 4.8399 -6.0870 1.0655 40 1 6.1433 -5.1731 0.2497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134280369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:36 Heat of formation + Delta-G solvation = 36.762344 kcal Electronic energy + Delta-G solvation = -19822.184942 eV Core-core repulsion = 17022.561590 eV Total energy + Delta-G solvation = -2799.623353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.08575 -37.57512 -35.11146 -32.83220 -32.01266 -30.92913 -28.53385 -27.24753 -26.68013 -26.16625 -23.32093 -21.79927 -21.47832 -20.41682 -18.86788 -16.73773 -16.34623 -16.05623 -15.40438 -14.60197 -14.52873 -14.00114 -13.67411 -13.51172 -12.71605 -12.65236 -12.53082 -12.43034 -12.22126 -11.95541 -11.52106 -11.49029 -11.37408 -11.11126 -11.00801 -10.92488 -10.77440 -10.69929 -10.45887 -10.21956 -9.89728 -9.54654 -9.10777 -8.62461 -8.36895 -8.30818 -6.61118 -5.90900 -3.95715 1.88704 2.10948 3.35748 3.39962 3.43517 3.80078 4.49502 4.52802 4.68327 4.86874 5.18996 5.24283 5.35515 5.39945 5.45895 5.50125 5.64762 5.71063 5.76648 5.91066 5.94854 6.02232 6.05755 6.08358 6.20843 6.25299 6.33939 6.36127 6.43601 6.46178 6.62368 6.71393 6.82518 6.99503 7.14293 7.31121 7.57882 7.95251 8.10577 8.38229 8.44665 9.02683 9.13212 9.66710 11.13698 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.007509 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.185880 B = 3728.029968 C = 4952.354652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.157 4.157 4 N -0.586 5.586 5 C 0.257 3.743 6 C -0.507 4.507 7 H 0.055 0.945 8 C 0.059 3.941 9 N -0.899 5.899 10 Si 0.891 3.109 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.427 3.573 15 C -0.264 4.264 16 C -0.025 4.025 17 C -0.245 4.245 18 C 0.172 3.828 19 N -0.514 5.514 20 C -0.071 4.071 21 C -0.118 4.118 22 C -0.061 4.061 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.261 0.739 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 -8.901 -9.943 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 C -0.215 4.215 4 N -0.295 5.295 5 C 0.138 3.862 6 C -0.546 4.546 7 H 0.073 0.927 8 C -0.142 4.142 9 N -0.539 5.539 10 Si 0.719 3.281 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.204 1.204 14 C 0.190 3.810 15 C -0.289 4.289 16 C -0.051 4.051 17 C -0.251 4.251 18 C 0.031 3.969 19 N -0.230 5.230 20 C -0.109 4.109 21 C -0.156 4.156 22 C -0.099 4.099 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.364 -8.222 -8.936 12.600 hybrid contribution 0.776 0.474 -0.377 0.985 sum 4.140 -7.747 -9.313 12.802 Atomic orbital electron populations 1.22171 0.95754 1.01738 1.02297 1.20913 0.93663 0.93395 0.87688 1.22171 1.01303 0.95916 1.02130 1.47197 1.47953 1.26296 1.08056 1.19173 0.95058 0.95032 0.76953 1.21418 1.09205 1.22225 1.01732 0.92700 1.24894 0.95594 0.97165 0.96516 1.69920 1.29282 1.43647 1.11062 0.86675 0.82069 0.81584 0.77741 1.20473 1.21376 1.20389 1.18196 0.87679 0.87125 0.88012 1.21309 1.08249 1.01481 0.97881 1.20540 0.93506 0.94044 0.96981 1.20912 1.06642 1.02395 0.95128 1.21434 0.91865 0.89461 0.94165 1.66509 1.11171 1.13296 1.32017 1.20992 0.96246 0.97853 0.95839 1.22314 0.97934 0.99627 0.95679 1.20672 0.96357 0.95696 0.97138 0.91342 0.92364 0.92930 0.90695 0.92911 0.93352 0.90139 0.95281 0.94225 0.92945 0.85623 0.86432 0.89993 0.89781 0.90711 0.91128 0.91442 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.15 37.15 0.34 -2.21 16 2 C 0.15 2.62 3.17 -67.93 -0.22 2.41 16 3 C -0.16 -2.79 8.51 37.16 0.32 -2.48 16 4 N -0.59 -12.84 2.50 -167.67 -0.42 -13.26 16 5 C 0.26 6.70 4.57 -5.20 -0.02 6.67 16 6 C -0.51 -14.20 7.83 -34.44 -0.27 -14.47 16 7 H 0.05 1.57 7.62 -52.48 -0.40 1.17 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 10 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.43 9.23 7.32 -155.17 -1.14 8.09 16 15 C -0.26 -4.69 9.29 -39.25 -0.36 -5.05 16 16 C -0.03 -0.40 10.16 -39.31 -0.40 -0.80 16 17 C -0.25 -4.03 6.16 -104.15 -0.64 -4.67 16 18 C 0.17 3.30 7.31 -82.03 -0.60 2.70 16 19 N -0.51 -11.86 9.25 -8.37 -0.08 -11.93 16 20 C -0.07 -1.09 6.78 -26.66 -0.18 -1.27 16 21 C -0.12 -1.38 7.10 -25.19 -0.18 -1.56 16 22 C -0.06 -0.75 6.76 -26.91 -0.18 -0.94 16 23 H 0.07 1.22 6.62 -51.92 -0.34 0.87 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.17 5.37 -51.93 -0.28 0.89 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.66 6.92 -51.93 -0.36 1.30 16 30 H 0.03 0.78 6.35 -51.92 -0.33 0.45 16 31 H 0.04 1.16 7.57 -51.93 -0.39 0.77 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 33 H 0.13 1.93 5.88 -52.49 -0.31 1.62 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -31.41 319.57 -9.80 -41.21 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.20 Total: 0.03 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.63 Total: -11.98 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.24 Total: -51.20 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.41 -9.80 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134280369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.968 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds