Wall clock time and date at job start Mon Mar 30 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47515 * 2 1 4 4 N 1.46502 * 109.47338 * 119.99981 * 2 1 3 5 5 C 1.46499 * 120.00006 * 301.39742 * 4 2 1 6 6 C 1.50696 * 109.47124 * 270.00039 * 5 4 2 7 7 H 1.08003 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00101 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00287 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47048 * 59.99619 * 10 8 6 12 12 H 1.48500 * 109.47034 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46934 * 299.99799 * 10 8 6 14 14 C 1.38997 * 120.00360 * 121.39364 * 4 2 1 15 15 C 1.39147 * 119.69227 * 349.03560 * 14 4 2 16 16 C 1.38228 * 118.92183 * 179.97438 * 15 14 4 17 17 C 1.38988 * 118.67635 * 0.02562 * 16 15 14 18 18 C 1.38031 * 119.48471 * 359.97438 * 17 16 15 19 19 N 1.32219 * 119.69759 * 169.05654 * 14 4 2 20 20 C 1.51489 * 109.61435 * 179.97438 * 18 17 16 21 21 C 1.54593 * 105.22728 * 17.22938 * 20 18 17 22 22 C 1.51254 * 130.55694 * 180.02562 * 17 16 15 23 23 H 1.09009 * 109.47129 * 300.00333 * 1 2 3 24 24 H 1.08995 * 109.47217 * 59.99711 * 1 2 3 25 25 H 1.09000 * 109.47519 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47257 * 239.99951 * 2 1 3 27 27 H 1.09002 * 109.47472 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47067 * 300.00486 * 3 2 1 29 29 H 1.09000 * 109.47367 * 59.99858 * 3 2 1 30 30 H 1.09010 * 109.47171 * 29.99549 * 5 4 2 31 31 H 1.09000 * 109.47706 * 149.99328 * 5 4 2 32 32 H 0.96997 * 120.00145 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.53817 * 359.96948 * 15 14 4 34 34 H 1.07995 * 120.66391 * 179.97438 * 16 15 14 35 35 H 1.09002 * 110.29488 * 136.14301 * 20 18 17 36 36 H 1.08995 * 110.29789 * 258.18300 * 20 18 17 37 37 H 1.09002 * 110.91309 * 215.45908 * 21 20 18 38 38 H 1.09003 * 110.86243 * 91.80915 * 21 20 18 39 39 H 1.09006 * 110.31445 * 281.75973 * 22 17 16 40 40 H 1.09000 * 110.31539 * 43.83535 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6394 -0.2082 2.5265 6 6 2.6528 0.8004 3.0027 7 1 3.4952 1.0562 2.3771 8 6 2.5046 1.3966 4.2370 9 7 1.4785 1.0856 4.9987 10 14 3.7612 2.6463 4.8275 11 1 3.8059 3.7889 3.8801 12 1 3.3770 3.1354 6.1760 13 1 5.1001 2.0075 4.8961 14 6 2.8412 -1.8036 1.0689 15 6 3.0131 -2.3946 -0.1790 16 6 3.8354 -3.5004 -0.2874 17 6 4.4604 -3.9815 0.8569 18 6 4.2472 -3.3482 2.0647 19 7 3.4531 -2.2911 2.1348 20 6 5.0301 -4.0529 3.1535 21 6 6.0814 -4.9077 2.4093 22 6 5.3997 -5.1519 1.0463 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.6563 0.2602 2.4768 31 1 1.6072 -1.0471 3.2218 32 1 1.3745 1.5048 5.8671 33 1 2.5121 -1.9959 -1.0487 34 1 3.9884 -3.9815 -1.2421 35 1 5.5228 -3.3240 3.7970 36 1 4.3699 -4.6904 3.7417 37 1 6.2563 -5.8494 2.9298 38 1 7.0123 -4.3548 2.2830 39 1 4.8399 -6.0870 1.0655 40 1 6.1433 -5.1731 0.2497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134280369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:36 Heat of formation + Delta-G solvation = 19.540274 kcal Electronic energy + Delta-G solvation = -19822.931747 eV Core-core repulsion = 17022.561590 eV Total energy + Delta-G solvation = -2800.370158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46455 -39.02187 -36.41627 -34.89673 -33.46984 -32.42794 -30.20737 -28.54596 -28.07618 -27.73019 -25.13834 -23.23107 -22.96434 -21.53214 -20.35943 -18.55086 -18.18299 -17.55871 -16.54665 -16.51506 -15.84586 -15.51389 -15.25178 -14.88835 -14.23653 -14.13470 -13.94387 -13.71288 -13.64152 -13.38102 -13.17896 -12.98576 -12.81165 -12.77699 -12.59444 -12.32584 -12.29548 -12.11123 -11.96945 -11.79647 -11.57347 -11.39072 -10.58007 -10.51146 -10.16048 -9.81694 -8.35118 -7.92904 -6.23774 0.49398 0.74833 1.33246 1.36509 1.43821 2.28403 2.44050 3.09772 3.14869 3.37430 3.74125 3.95513 4.13780 4.21075 4.24655 4.28095 4.30084 4.41804 4.50477 4.74761 4.81891 4.82463 4.90485 4.95018 4.97343 5.00884 5.06094 5.12171 5.13362 5.26353 5.28011 5.34211 5.40454 5.45756 5.52863 5.56011 5.73129 5.96995 6.18643 6.42124 6.73492 6.91035 7.41916 7.64164 8.92465 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.007509 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.185880 B = 3728.029968 C = 4952.354652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 C -0.149 4.149 4 N -0.602 5.602 5 C 0.283 3.717 6 C -0.508 4.508 7 H 0.042 0.958 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.954 3.046 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.390 3.610 15 C -0.258 4.258 16 C -0.024 4.024 17 C -0.234 4.234 18 C 0.130 3.870 19 N -0.573 5.573 20 C -0.077 4.077 21 C -0.105 4.105 22 C -0.057 4.057 23 H 0.037 0.963 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.035 0.965 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.013 0.987 31 H -0.006 1.006 32 H 0.263 0.737 33 H 0.152 0.848 34 H 0.163 0.837 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 -10.278 -12.578 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.039 3.961 3 C -0.208 4.208 4 N -0.313 5.313 5 C 0.162 3.838 6 C -0.547 4.547 7 H 0.061 0.939 8 C -0.191 4.191 9 N -0.574 5.574 10 Si 0.780 3.220 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.207 1.207 14 C 0.155 3.845 15 C -0.283 4.283 16 C -0.049 4.049 17 C -0.239 4.239 18 C -0.009 4.009 19 N -0.290 5.290 20 C -0.115 4.115 21 C -0.143 4.143 22 C -0.094 4.094 23 H 0.056 0.944 24 H 0.114 0.886 25 H 0.072 0.928 26 H 0.123 0.877 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.012 0.988 32 H 0.072 0.928 33 H 0.170 0.830 34 H 0.181 0.819 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.931 -9.631 -11.601 15.864 hybrid contribution 0.330 0.787 0.403 0.943 sum 5.262 -8.844 -11.198 15.209 Atomic orbital electron populations 1.22103 0.94468 1.01940 1.02584 1.21219 0.94719 0.93051 0.87094 1.22091 1.00116 0.96328 1.02219 1.47086 1.49373 1.27511 1.07304 1.18467 0.93861 0.92539 0.78951 1.21575 1.08968 1.22401 1.01731 0.93933 1.25707 0.97492 0.99169 0.96732 1.70042 1.30974 1.44907 1.11428 0.85677 0.79210 0.79436 0.77711 1.19142 1.20442 1.20673 1.18635 0.88620 0.87759 0.89487 1.21577 1.08220 1.01614 0.96872 1.21068 0.92022 0.93126 0.98717 1.21515 1.05743 1.02597 0.94071 1.22147 0.92268 0.89500 0.96963 1.66399 1.12983 1.15617 1.34034 1.21171 0.96973 0.97843 0.95485 1.22340 0.96594 1.00225 0.95140 1.20795 0.96164 0.94468 0.98003 0.94364 0.88590 0.92769 0.87739 0.94578 0.89319 0.93833 0.96907 0.98768 0.92839 0.83045 0.81907 0.91838 0.89456 0.87559 0.90660 0.89411 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 9.15 71.98 0.66 -4.09 16 2 C 0.14 4.98 3.17 44.99 0.14 5.12 16 3 C -0.15 -5.30 8.51 71.98 0.61 -4.69 16 4 N -0.60 -27.41 2.50 -684.38 -1.71 -29.12 16 5 C 0.28 15.81 4.57 85.63 0.39 16.20 16 6 C -0.51 -30.01 7.83 25.60 0.20 -29.81 16 7 H 0.04 2.56 7.62 -2.91 -0.02 2.54 16 8 C 0.01 0.39 5.46 84.65 0.46 0.85 16 9 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 10 Si 0.95 46.83 29.54 68.60 2.03 48.85 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 14 C 0.39 17.28 7.32 133.12 0.97 18.25 16 15 C -0.26 -8.72 9.29 22.49 0.21 -8.51 16 16 C -0.02 -0.69 10.16 22.45 0.23 -0.46 16 17 C -0.23 -7.15 6.16 -19.56 -0.12 -7.27 16 18 C 0.13 5.06 7.31 42.67 0.31 5.38 16 19 N -0.57 -27.70 9.25 -180.40 -1.67 -29.37 16 20 C -0.08 -2.35 6.78 30.64 0.21 -2.14 16 21 C -0.11 -2.16 7.10 31.59 0.22 -1.94 16 22 C -0.06 -1.17 6.76 30.48 0.21 -0.97 16 23 H 0.04 1.40 6.62 -2.38 -0.02 1.39 16 24 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.10 3.01 5.37 -2.39 -0.01 3.00 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 29 H 0.04 1.85 6.92 -2.39 -0.02 1.83 16 30 H 0.01 0.75 6.35 -2.38 -0.02 0.74 16 31 H -0.01 -0.37 7.57 -2.39 -0.02 -0.39 16 32 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.15 4.16 5.88 -2.91 -0.02 4.15 16 34 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.53 8.14 -2.38 -0.02 1.52 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.30 319.57 4.65 -69.64 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.01 Total: 11.76 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 4.71 Total: -14.08 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -3.10 Total: -116.18 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -74.30 4.65 -69.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134280369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.183 kcal (2) G-P(sol) polarization free energy of solvation -74.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds