Wall clock time and date at job start Mon Mar 30 2020 07:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86810 * 119.99937 * 2 1 4 4 H 1.48500 * 109.46887 * 239.99789 * 3 2 1 5 5 H 1.48497 * 109.47133 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47026 * 120.00048 * 3 2 1 7 7 C 1.40165 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.39857 * 120.00011 * 0.02562 * 7 2 1 10 10 N 1.30952 * 125.27272 * 0.03284 * 9 7 2 11 11 C 1.33046 * 116.58122 * 179.97438 * 10 9 7 12 12 C 1.37560 * 113.50603 * 359.97190 * 11 10 9 13 13 S 1.71157 * 109.84639 * 0.02562 * 12 11 10 14 14 C 1.51398 * 108.22838 * 180.02562 * 12 11 10 15 15 C 1.50724 * 105.83005 * 0.02562 * 14 12 11 16 16 C 1.37844 * 132.43690 * 180.02562 * 15 14 12 17 17 C 1.38655 * 119.89876 * 179.97438 * 16 15 14 18 18 F 1.35100 * 119.92349 * 179.97438 * 17 16 15 19 19 C 1.38613 * 120.14897 * 0.02562 * 17 16 15 20 20 C 1.37916 * 120.22076 * 359.97438 * 19 17 16 21 21 C 1.39038 * 107.28122 * 359.97216 * 15 14 12 22 22 H 0.96996 * 119.99564 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.17966 * 119.08949 * 14 12 11 24 24 H 1.09001 * 110.17645 * 240.83261 * 14 12 11 25 25 H 1.08000 * 120.05413 * 0.19728 * 16 15 14 26 26 H 1.07996 * 119.89201 * 180.02562 * 19 17 16 27 27 H 1.07992 * 120.10643 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0082 -1.2138 0.0005 8 1 3.0882 -1.2138 0.0010 9 6 1.3089 -2.4251 0.0005 10 7 0.0050 -2.5454 -0.0005 11 6 -0.4785 -3.7850 -0.0009 12 6 0.4974 -4.7545 -0.0006 13 16 2.0443 -4.0219 0.0008 14 6 -0.1801 -6.1084 -0.0017 15 6 -1.6609 -5.8271 -0.0032 16 6 -2.7645 -6.6530 -0.0042 17 6 -4.0381 -6.1047 -0.0051 18 9 -5.1201 -6.9137 -0.0065 19 6 -4.2036 -4.7285 -0.0055 20 6 -3.1032 -3.8970 -0.0046 21 6 -1.8189 -4.4458 -0.0024 22 1 -0.4849 0.8400 0.0004 23 1 0.0970 -6.6668 -0.8957 24 1 0.0969 -6.6681 0.8917 25 1 -2.6375 -7.7255 -0.0006 26 1 -5.1974 -4.3059 -0.0058 27 1 -3.2343 -2.8251 -0.0045 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135063966.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:03 Heat of formation + Delta-G solvation = 2.883425 kcal Electronic energy + Delta-G solvation = -15995.101915 eV Core-core repulsion = 13143.917177 eV Total energy + Delta-G solvation = -2851.184738 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.032 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -49.89860 -41.25743 -38.69791 -36.04322 -34.53095 -32.09334 -30.05069 -29.20561 -26.50427 -24.12090 -23.61513 -22.34008 -20.75486 -18.60715 -18.52623 -17.69660 -17.25066 -16.63997 -16.54774 -16.18153 -15.66599 -15.04481 -14.88371 -14.34569 -14.21599 -13.94808 -13.59612 -13.47997 -12.94196 -12.92908 -12.81984 -12.67304 -12.05869 -11.87528 -11.57256 -11.28772 -10.19797 -10.02180 -9.62683 -9.60584 -8.86697 -8.56665 -6.63646 -0.22644 0.21564 0.70652 1.10374 1.42690 1.52920 1.56286 1.64888 2.19118 2.23688 2.78986 3.06871 3.31515 3.46033 3.56115 3.89787 4.09589 4.28495 4.31806 4.58282 4.72235 4.83621 4.88154 4.98667 5.05619 5.14758 5.34031 5.50646 5.61389 5.86622 6.03418 6.27794 6.57596 7.89507 8.24494 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.031362 B = 0.005695 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.591619 B = 4915.215432 C = 5792.618370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.026 3.974 3 Si 1.005 2.995 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.112 0.888 9 C 0.203 3.797 10 N -0.560 5.560 11 C 0.099 3.901 12 C -0.414 4.414 13 S -0.017 6.017 14 C 0.034 3.966 15 C -0.064 4.064 16 C -0.124 4.124 17 C 0.093 3.907 18 F -0.135 7.135 19 C -0.145 4.145 20 C -0.077 4.077 21 C -0.050 4.050 22 H 0.290 0.710 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.169 0.831 26 H 0.163 0.837 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 -5.959 -0.004 6.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.200 4.200 3 Si 0.823 3.177 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.457 4.457 8 H 0.130 0.870 9 C -0.050 4.050 10 N -0.280 5.280 11 C -0.038 4.038 12 C -0.539 4.539 13 S 0.243 5.757 14 C -0.004 4.004 15 C -0.067 4.067 16 C -0.143 4.143 17 C 0.073 3.927 18 F -0.114 7.114 19 C -0.164 4.164 20 C -0.097 4.097 21 C -0.053 4.053 22 H 0.101 0.899 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.187 0.813 26 H 0.180 0.820 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.922 -5.838 -0.004 6.529 hybrid contribution -0.814 0.578 0.000 0.999 sum -3.736 -5.260 -0.003 6.452 Atomic orbital electron populations 1.70114 1.09485 1.30691 1.26866 1.27187 0.95816 1.04699 0.92291 0.84916 0.78405 0.73691 0.80721 1.17536 1.19131 1.17545 1.19475 0.95670 0.88484 1.42056 0.87045 1.24389 0.89087 0.94756 0.96804 1.66999 1.10376 1.19462 1.31147 1.20958 0.94094 0.88362 1.00354 1.25679 0.96372 1.02114 1.29709 1.82411 1.08069 1.05716 1.79528 1.18656 0.87211 0.91354 1.03219 1.20155 0.95896 0.92175 0.98478 1.20398 0.88549 1.01601 1.03709 1.17540 0.83063 0.88050 1.04018 1.91488 1.53111 1.72745 1.94064 1.21124 1.00272 0.91367 1.03634 1.20881 0.90418 1.00418 0.97943 1.19264 0.90428 0.93788 1.01815 0.89899 0.87985 0.87966 0.81324 0.81981 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.38 11.86 21.87 0.26 -39.12 15 2 C 0.03 1.26 5.50 85.32 0.47 1.73 15 3 Si 1.00 35.12 29.56 68.60 2.03 37.14 15 4 H -0.25 -8.36 7.11 99.48 0.71 -7.66 15 5 H -0.27 -8.93 7.11 99.48 0.71 -8.22 15 6 H -0.25 -8.37 7.11 99.48 0.71 -7.66 15 7 C -0.41 -21.34 9.38 23.13 0.22 -21.12 15 8 H 0.11 5.15 7.85 -2.91 -0.02 5.13 15 9 C 0.20 11.22 7.04 85.22 0.60 11.82 15 10 N -0.56 -32.51 8.74 -181.96 -1.59 -34.10 15 11 C 0.10 5.14 7.73 41.83 0.32 5.46 15 12 C -0.41 -19.50 7.41 25.75 0.19 -19.31 15 13 S -0.02 -0.83 23.14 -56.49 -1.31 -2.13 15 14 C 0.03 1.22 6.74 29.33 0.20 1.42 15 15 C -0.06 -2.28 6.31 -19.76 -0.12 -2.40 15 16 C -0.12 -3.48 10.02 22.28 0.22 -3.26 15 17 C 0.09 2.62 7.31 22.46 0.16 2.79 15 18 F -0.14 -3.52 17.26 44.97 0.78 -2.75 15 19 C -0.15 -4.30 10.01 22.28 0.22 -4.08 15 20 C -0.08 -2.92 10.11 22.54 0.23 -2.69 15 21 C -0.05 -2.17 6.20 -19.72 -0.12 -2.29 15 22 H 0.29 13.61 8.29 -92.71 -0.77 12.85 15 23 H 0.10 3.18 8.14 -2.39 -0.02 3.16 15 24 H 0.10 3.19 8.14 -2.39 -0.02 3.17 15 25 H 0.17 3.49 8.06 -2.91 -0.02 3.47 15 26 H 0.16 3.76 8.06 -2.91 -0.02 3.73 15 27 H 0.12 4.85 8.06 -2.91 -0.02 4.82 15 Total: -1.00 -64.08 262.22 3.98 -60.10 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.22 Total: 12.79 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 2.59 Total: -31.94 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -1.33 Total: -73.22 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.75 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 2.03 Total: 37.14 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -1.31 Total: -2.13 kcal Total: -64.08 3.98 -60.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135063966.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.984 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds