Wall clock time and date at job start Mon Mar 30 2020 07:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29482 * 1 3 3 Si 1.86792 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47516 * 239.99819 * 3 2 1 5 5 H 1.48503 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47093 * 119.99935 * 3 2 1 7 7 C 1.46607 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99800 * 199.86947 * 7 2 1 9 9 C 1.40003 * 120.00137 * 19.87006 * 7 2 1 10 10 C 1.41570 * 120.32693 * 224.35999 * 9 7 2 11 11 Cl 1.73601 * 120.17371 * 359.97438 * 10 9 7 12 12 C 1.37584 * 119.65267 * 180.02562 * 10 9 7 13 13 C 1.38753 * 120.33381 * 359.97438 * 12 10 9 14 14 C 1.38708 * 120.68116 * 0.25587 * 13 12 10 15 15 N 1.48018 * 119.83191 * 179.72269 * 14 13 12 16 16 O 1.31702 * 119.99856 * 0.02562 * 15 14 13 17 17 O 1.31701 * 119.99794 * 180.02562 * 15 14 13 18 18 C 1.37626 * 120.33342 * 359.48514 * 14 13 12 19 19 Cl 1.73599 * 120.17303 * 180.27363 * 18 14 13 20 20 H 0.97006 * 119.99584 * 2.47194 * 1 2 3 21 21 H 1.07998 * 119.82884 * 179.97438 * 12 10 9 22 22 H 1.08003 * 119.65876 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2288 1.6176 0.0000 4 1 3.0826 1.6964 -1.2124 5 1 1.2638 2.7464 0.0006 6 1 3.0826 1.6963 1.2125 7 6 2.0278 -1.2697 -0.0006 8 1 3.0596 -1.2977 0.3173 9 6 1.3903 -2.4459 -0.4132 10 6 1.5474 -3.6418 0.3278 11 17 2.5339 -3.6601 1.7562 12 6 0.9149 -4.7899 -0.0905 13 6 0.1261 -4.7791 -1.2320 14 6 -0.0336 -3.6163 -1.9711 15 7 -0.8745 -3.6276 -3.1891 16 8 -1.4693 -4.7399 -3.5683 17 8 -1.0279 -2.5255 -3.8936 18 6 0.5820 -2.4509 -1.5749 19 17 0.3736 -0.9962 -2.4991 20 1 -0.4850 0.8393 -0.0362 21 1 1.0331 -5.7039 0.4724 22 1 -0.3651 -5.6867 -1.5507 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165839408.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:32 Heat of formation + Delta-G solvation = 29.678075 kcal Electronic energy + Delta-G solvation = -15102.252599 eV Core-core repulsion = 12099.547324 eV Total energy + Delta-G solvation = -3002.705275 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -38.99425 -37.40285 -35.72807 -35.22829 -34.08090 -33.59004 -30.90996 -30.28734 -25.78799 -25.50280 -21.92319 -21.09601 -18.53561 -17.37092 -16.76516 -16.00888 -15.49233 -15.20128 -14.76095 -13.93914 -13.27000 -12.97321 -12.22387 -12.06240 -11.67036 -11.40194 -11.32687 -11.25092 -10.95820 -10.67689 -10.45536 -10.37504 -9.99745 -9.92814 -9.70950 -8.89433 -8.29859 -7.92287 -7.35609 -5.00643 0.15661 1.96436 1.97965 2.10062 2.80529 2.84433 2.85918 2.89058 3.32337 3.57694 3.89988 4.52927 5.38838 5.61641 5.85248 5.92251 6.36060 6.42372 6.53307 6.70869 6.90756 7.12512 7.60761 7.70241 7.90942 8.07579 9.53126 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.012046 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.404855 B = 2323.942601 C = 3738.219037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.082 3.918 3 Si 0.913 3.087 4 H -0.253 1.253 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.433 4.433 8 H 0.105 0.895 9 C 0.110 3.890 10 C -0.088 4.088 11 Cl -0.080 7.080 12 C -0.069 4.069 13 C -0.188 4.188 14 C 0.041 3.959 15 N -0.008 5.008 16 O -0.220 6.220 17 O -0.168 6.168 18 C -0.031 4.031 19 Cl -0.025 7.025 20 H 0.301 0.699 21 H 0.128 0.872 22 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -0.594 2.037 3.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.149 4.149 3 Si 0.735 3.265 4 H -0.177 1.177 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.458 4.458 8 H 0.123 0.877 9 C 0.105 3.895 10 C -0.117 4.117 11 Cl -0.051 7.051 12 C -0.089 4.089 13 C -0.209 4.209 14 C -0.047 4.047 15 N 0.466 4.534 16 O -0.404 6.404 17 O -0.365 6.365 18 C -0.061 4.061 19 Cl 0.005 6.995 20 H 0.114 0.886 21 H 0.146 0.854 22 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.226 -0.375 2.638 4.184 hybrid contribution -0.079 0.786 -0.308 0.848 sum 3.147 0.411 2.330 3.937 Atomic orbital electron populations 1.69064 1.09014 1.32337 1.24048 1.27326 0.94491 1.01764 0.91345 0.86213 0.80631 0.78620 0.81010 1.17677 1.19600 1.18071 1.20600 0.99017 0.89408 1.36773 0.87671 1.16883 0.90859 0.92743 0.89015 1.21129 1.03369 0.96039 0.91150 1.98264 1.69377 1.98706 1.38740 1.20432 0.96277 0.96847 0.95317 1.20053 1.06862 0.96261 0.97771 1.20072 1.00312 0.96940 0.87358 1.50619 0.98900 1.01670 1.02245 1.96172 1.50471 1.17458 1.76252 1.96268 1.68451 1.17611 1.54162 1.21031 1.04091 0.85915 0.95100 1.98314 1.94994 1.35900 1.70323 0.88642 0.85383 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -16.30 11.20 55.99 0.63 -15.68 14 2 C 0.08 1.76 3.95 -15.17 -0.06 1.70 14 3 Si 0.91 16.39 29.68 -169.99 -5.05 11.34 14 4 H -0.25 -4.56 7.11 56.52 0.40 -4.16 14 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 14 6 H -0.26 -4.49 7.11 56.52 0.40 -4.09 14 7 C -0.43 -9.69 8.09 -35.55 -0.29 -9.97 14 8 H 0.11 2.25 7.82 -52.49 -0.41 1.84 14 9 C 0.11 2.51 5.33 -106.71 -0.57 1.94 14 10 C -0.09 -1.83 6.39 -38.55 -0.25 -2.07 14 11 Cl -0.08 -1.46 27.96 -51.86 -1.45 -2.91 14 12 C -0.07 -1.30 9.80 -39.63 -0.39 -1.69 14 13 C -0.19 -3.80 9.58 -39.22 -0.38 -4.18 14 14 C 0.04 0.93 6.88 -80.00 -0.55 0.38 14 15 N -0.01 -0.19 4.98 33.94 0.17 -0.02 14 16 O -0.22 -5.03 19.13 -31.57 -0.60 -5.64 14 17 O -0.17 -4.00 16.56 -31.57 -0.52 -4.52 14 18 C -0.03 -0.73 5.99 -38.55 -0.23 -0.96 14 19 Cl -0.02 -0.57 21.68 -51.86 -1.12 -1.69 14 20 H 0.30 6.16 8.27 -40.82 -0.34 5.82 14 21 H 0.13 1.99 8.06 -52.49 -0.42 1.57 14 22 H 0.14 2.49 7.55 -52.48 -0.40 2.10 14 LS Contribution 240.23 15.07 3.62 3.62 Total: -1.00 -24.20 240.23 -7.40 -31.60 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -0.36 Total: -1.27 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -2.71 Total: -14.85 kcal Atomic # 7 Polarization: -16.49 SS G_CDS: 0.80 Total: -15.69 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.13 Total: -10.16 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -5.05 Total: 11.34 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -2.57 Total: -4.60 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -24.20 -7.40 -31.60 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165839408.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.282 kcal (2) G-P(sol) polarization free energy of solvation -24.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds