Wall clock time and date at job start Mon Mar 30 2020 07:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29482 * 1 3 3 Si 1.86792 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47516 * 239.99819 * 3 2 1 5 5 H 1.48503 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47093 * 119.99935 * 3 2 1 7 7 C 1.46607 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99800 * 199.86947 * 7 2 1 9 9 C 1.40003 * 120.00137 * 19.87006 * 7 2 1 10 10 C 1.41570 * 120.32693 * 224.35999 * 9 7 2 11 11 Cl 1.73601 * 120.17371 * 359.97438 * 10 9 7 12 12 C 1.37584 * 119.65267 * 180.02562 * 10 9 7 13 13 C 1.38753 * 120.33381 * 359.97438 * 12 10 9 14 14 C 1.38708 * 120.68116 * 0.25587 * 13 12 10 15 15 N 1.48018 * 119.83191 * 179.72269 * 14 13 12 16 16 O 1.31702 * 119.99856 * 0.02562 * 15 14 13 17 17 O 1.31701 * 119.99794 * 180.02562 * 15 14 13 18 18 C 1.37626 * 120.33342 * 359.48514 * 14 13 12 19 19 Cl 1.73599 * 120.17303 * 180.27363 * 18 14 13 20 20 H 0.97006 * 119.99584 * 2.47194 * 1 2 3 21 21 H 1.07998 * 119.82884 * 179.97438 * 12 10 9 22 22 H 1.08003 * 119.65876 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2288 1.6176 0.0000 4 1 3.0826 1.6964 -1.2124 5 1 1.2638 2.7464 0.0006 6 1 3.0826 1.6963 1.2125 7 6 2.0278 -1.2697 -0.0006 8 1 3.0596 -1.2977 0.3173 9 6 1.3903 -2.4459 -0.4132 10 6 1.5474 -3.6418 0.3278 11 17 2.5339 -3.6601 1.7562 12 6 0.9149 -4.7899 -0.0905 13 6 0.1261 -4.7791 -1.2320 14 6 -0.0336 -3.6163 -1.9711 15 7 -0.8745 -3.6276 -3.1891 16 8 -1.4693 -4.7399 -3.5683 17 8 -1.0279 -2.5255 -3.8936 18 6 0.5820 -2.4509 -1.5749 19 17 0.3736 -0.9962 -2.4991 20 1 -0.4850 0.8393 -0.0362 21 1 1.0331 -5.7039 0.4724 22 1 -0.3651 -5.6867 -1.5507 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165839408.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:31 Heat of formation + Delta-G solvation = 18.762570 kcal Electronic energy + Delta-G solvation = -15102.725931 eV Core-core repulsion = 12099.547324 eV Total energy + Delta-G solvation = -3003.178607 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70058 -39.12533 -37.34552 -36.85908 -35.70318 -35.40130 -32.58328 -31.92285 -27.50401 -27.18841 -23.55069 -22.79238 -20.21071 -19.13432 -18.49060 -17.62788 -17.09134 -16.95988 -16.41655 -15.48414 -14.80891 -14.62394 -13.78584 -13.64376 -13.25814 -12.98535 -12.91740 -12.90819 -12.57078 -12.26237 -12.11715 -12.00090 -11.74659 -11.52715 -11.32658 -10.59124 -9.92737 -9.57793 -8.95207 -6.67904 -1.62863 0.22385 0.31122 0.44232 1.25273 1.35879 1.41903 1.46834 1.67648 2.10001 2.30711 2.89217 3.78199 4.00798 4.22681 4.32781 4.67863 4.82250 4.92545 5.07899 5.26975 5.53111 5.82580 6.03458 6.28156 6.42862 7.96251 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.012046 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.404855 B = 2323.942601 C = 3738.219037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.057 3.943 3 Si 0.963 3.037 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.247 1.247 7 C -0.457 4.457 8 H 0.108 0.892 9 C 0.090 3.910 10 C -0.088 4.088 11 Cl -0.057 7.057 12 C -0.062 4.062 13 C -0.174 4.174 14 C 0.021 3.979 15 N -0.008 5.008 16 O -0.205 6.205 17 O -0.200 6.200 18 C -0.062 4.062 19 Cl -0.033 7.033 20 H 0.305 0.695 21 H 0.170 0.830 22 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -1.532 3.071 5.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.172 4.172 3 Si 0.782 3.218 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.170 1.170 7 C -0.481 4.481 8 H 0.126 0.874 9 C 0.085 3.915 10 C -0.117 4.117 11 Cl -0.028 7.028 12 C -0.081 4.081 13 C -0.195 4.195 14 C -0.067 4.067 15 N 0.463 4.537 16 O -0.394 6.394 17 O -0.390 6.390 18 C -0.092 4.092 19 Cl -0.004 7.004 20 H 0.118 0.882 21 H 0.187 0.813 22 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.846 -1.252 3.655 5.452 hybrid contribution -0.264 0.865 -0.532 1.049 sum 3.581 -0.388 3.124 4.768 Atomic orbital electron populations 1.69088 1.10183 1.33238 1.25184 1.27937 0.94876 1.03932 0.90407 0.85480 0.79673 0.75571 0.81063 1.18001 1.18985 1.17031 1.20764 0.99285 0.90122 1.37973 0.87434 1.17188 0.91237 0.93899 0.89162 1.21439 1.02834 0.95944 0.91470 1.98271 1.68649 1.98646 1.37268 1.20853 0.94734 0.97755 0.94781 1.20502 1.05779 0.96022 0.97178 1.20452 1.00809 0.97861 0.87564 1.50775 0.98861 1.01547 1.02552 1.96137 1.49832 1.17380 1.76076 1.96272 1.69813 1.17830 1.55035 1.21201 1.05998 0.86095 0.95936 1.98290 1.95134 1.36425 1.70529 0.88188 0.81276 0.82297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -34.15 11.20 23.23 0.26 -33.89 14 2 C 0.06 2.42 3.95 87.22 0.34 2.76 14 3 Si 0.96 32.95 29.68 68.60 2.04 34.99 14 4 H -0.26 -8.82 7.11 99.48 0.71 -8.11 14 5 H -0.27 -8.75 7.11 99.48 0.71 -8.04 14 6 H -0.25 -7.99 7.11 99.48 0.71 -7.28 14 7 C -0.46 -20.23 8.09 24.88 0.20 -20.03 14 8 H 0.11 4.55 7.82 -2.91 -0.02 4.53 14 9 C 0.09 4.05 5.33 -21.22 -0.11 3.94 14 10 C -0.09 -3.46 6.39 22.94 0.15 -3.31 14 11 Cl -0.06 -1.96 27.96 -2.72 -0.08 -2.03 14 12 C -0.06 -2.12 9.80 22.24 0.22 -1.90 14 13 C -0.17 -6.55 9.58 22.51 0.22 -6.33 14 14 C 0.02 0.94 6.88 36.34 0.25 1.19 14 15 N -0.01 -0.39 4.98 -46.54 -0.23 -0.62 14 16 O -0.21 -9.09 19.13 3.51 0.07 -9.02 14 17 O -0.20 -9.68 16.56 3.51 0.06 -9.62 14 18 C -0.06 -2.90 5.99 22.94 0.14 -2.76 14 19 Cl -0.03 -1.54 21.68 -2.72 -0.06 -1.60 14 20 H 0.31 12.60 8.27 -92.70 -0.77 11.84 14 21 H 0.17 4.40 8.06 -2.91 -0.02 4.38 14 22 H 0.16 5.23 7.55 -2.91 -0.02 5.20 14 Total: -1.00 -50.48 240.23 4.74 -45.74 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: 1.29 Total: 2.51 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 1.40 Total: -26.45 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.03 Total: -34.51 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.13 Total: -18.64 kcal Atomic # 14 Polarization: 32.95 SS G_CDS: 2.04 Total: 34.99 kcal Atomic # 17 Polarization: -3.50 SS G_CDS: -0.14 Total: -3.63 kcal Total: -50.48 4.74 -45.74 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165839408.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.504 kcal (2) G-P(sol) polarization free energy of solvation -50.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds