Wall clock time and date at job start Mon Mar 30 2020 07:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29498 * 1 3 3 Si 1.86800 * 120.00147 * 2 1 4 4 H 1.48502 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47012 * 299.99900 * 3 2 1 6 6 H 1.48499 * 109.47133 * 59.99979 * 3 2 1 7 7 C 1.46579 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99137 * 194.84270 * 7 2 1 9 9 C 1.40167 * 120.00334 * 15.11891 * 7 2 1 10 10 C 1.41313 * 120.30122 * 24.78520 * 9 7 2 11 11 C 1.36446 * 119.81661 * 179.97438 * 10 9 7 12 12 Cl 1.73594 * 119.76822 * 180.02562 * 11 10 9 13 13 C 1.39043 * 120.45964 * 359.97438 * 11 10 9 14 14 N 1.48015 * 119.69061 * 180.02562 * 13 11 10 15 15 O 1.31692 * 120.00272 * 179.97438 * 14 13 11 16 16 O 1.31709 * 119.99627 * 0.02562 * 14 13 11 17 17 C 1.38598 * 120.62449 * 0.04233 * 13 11 10 18 18 C 1.37795 * 120.15996 * 359.69896 * 17 13 11 19 19 Cl 1.73601 * 120.22825 * 180.30084 * 18 17 13 20 20 H 0.96994 * 120.00011 * 3.61575 * 1 2 3 21 21 H 1.07994 * 120.09458 * 359.95909 * 10 9 7 22 22 H 1.07993 * 119.91778 * 179.97438 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 3.6890 1.3463 -0.0006 5 1 1.8703 2.3964 -1.2126 6 1 1.8703 2.3964 1.2125 7 6 2.0278 -1.2695 -0.0006 8 1 3.0808 -1.2851 0.2390 9 6 1.3633 -2.4622 -0.3177 10 6 0.1982 -2.4385 -1.1170 11 6 -0.4405 -3.6055 -1.4201 12 17 -1.8713 -3.5750 -2.4026 13 6 0.0473 -4.8191 -0.9483 14 7 -0.6587 -6.0749 -1.2880 15 8 -0.2018 -7.2278 -0.8449 16 8 -1.7434 -6.0393 -2.0343 17 6 1.1883 -4.8640 -0.1628 18 6 1.8565 -3.7015 0.1545 19 17 3.2902 -3.7565 1.1319 20 1 -0.4850 0.8383 -0.0530 21 1 -0.1859 -1.4993 -1.4867 22 1 1.5569 -5.8129 0.1978 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166627106.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:59 Heat of formation + Delta-G solvation = 11.871335 kcal Electronic energy + Delta-G solvation = -14780.712887 eV Core-core repulsion = 11777.235454 eV Total energy + Delta-G solvation = -3003.477433 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -38.82060 -37.07599 -35.91756 -35.46425 -34.57149 -32.98929 -31.07188 -29.83137 -27.26414 -24.14886 -21.99946 -21.18110 -18.55833 -17.49505 -16.83997 -16.13769 -15.01422 -14.72636 -14.70489 -14.13713 -13.38035 -13.03582 -12.85722 -12.09601 -11.91576 -11.80598 -11.62998 -11.01827 -10.85003 -10.77365 -10.34123 -10.16695 -10.06709 -9.90643 -9.48659 -9.08535 -8.65258 -8.15172 -7.90746 -5.48820 0.58223 1.99319 2.15146 2.46721 2.48156 2.59022 2.61049 2.78155 3.14617 3.20792 3.52634 4.49060 5.38526 5.72945 5.88344 5.95962 6.26264 6.38849 6.55801 6.78687 6.91171 7.18214 7.36258 7.50528 7.69058 8.20398 8.85332 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.008465 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.523990 B = 3307.081985 C = 4524.997816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.054 3.946 3 Si 0.935 3.065 4 H -0.245 1.245 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.331 4.331 8 H 0.117 0.883 9 C 0.105 3.895 10 C -0.150 4.150 11 C 0.043 3.957 12 Cl -0.056 7.056 13 C -0.134 4.134 14 N 0.038 4.962 15 O -0.298 6.298 16 O -0.253 6.253 17 C 0.005 3.995 18 C -0.134 4.134 19 Cl -0.084 7.084 20 H 0.312 0.688 21 H 0.151 0.849 22 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 7.021 0.723 8.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.167 1.167 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.354 4.354 8 H 0.135 0.865 9 C 0.100 3.900 10 C -0.171 4.171 11 C 0.014 3.986 12 Cl -0.026 7.026 13 C -0.233 4.233 14 N 0.477 4.523 15 O -0.459 6.459 16 O -0.424 6.424 17 C -0.016 4.016 18 C -0.163 4.163 19 Cl -0.055 7.055 20 H 0.125 0.875 21 H 0.168 0.832 22 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.885 7.375 0.880 8.382 hybrid contribution -0.071 0.200 -0.040 0.216 sum 3.814 7.574 0.841 8.522 Atomic orbital electron populations 1.69047 1.09269 1.33452 1.19668 1.27994 0.95088 1.03510 0.91385 0.85748 0.81404 0.77272 0.80084 1.16722 1.18168 1.18383 1.21807 0.97936 0.89220 1.26425 0.86544 1.17473 0.91237 0.91317 0.90020 1.20981 0.97952 0.95888 1.02278 1.20067 0.90262 0.92642 0.95597 1.98356 1.36983 1.98808 1.68494 1.19061 1.02923 0.80745 1.20569 1.49887 1.00674 1.03336 0.98357 1.96128 1.72741 1.15212 1.61818 1.96199 1.12562 1.95848 1.37834 1.20110 0.90881 0.98144 0.92469 1.20508 0.94973 0.93731 1.07123 1.98259 1.38426 1.98661 1.70193 0.87478 0.83210 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -12.69 10.96 55.99 0.61 -12.08 14 2 C 0.05 0.94 5.36 -15.17 -0.08 0.86 14 3 Si 0.94 12.68 29.67 -169.99 -5.04 7.64 14 4 H -0.24 -3.32 7.11 56.52 0.40 -2.92 14 5 H -0.26 -3.45 7.11 56.52 0.40 -3.05 14 6 H -0.26 -3.51 7.11 56.52 0.40 -3.11 14 7 C -0.33 -6.32 8.81 -35.50 -0.31 -6.63 14 8 H 0.12 2.09 7.18 -52.48 -0.38 1.71 14 9 C 0.10 2.20 5.62 -106.76 -0.60 1.60 14 10 C -0.15 -3.21 8.48 -39.06 -0.33 -3.54 14 11 C 0.04 0.97 6.27 -39.93 -0.25 0.72 14 12 Cl -0.06 -1.18 25.70 -51.86 -1.33 -2.51 14 13 C -0.13 -3.16 6.92 -79.52 -0.55 -3.71 14 14 N 0.04 0.98 4.98 34.17 0.17 1.15 14 15 O -0.30 -7.75 19.12 -31.56 -0.60 -8.35 14 16 O -0.25 -6.53 16.54 -31.57 -0.52 -7.05 14 17 C 0.00 0.10 9.34 -39.61 -0.37 -0.27 14 18 C -0.13 -2.77 6.40 -38.50 -0.25 -3.02 14 19 Cl -0.08 -1.50 27.62 -51.86 -1.43 -2.93 14 20 H 0.31 4.84 8.27 -40.82 -0.34 4.51 14 21 H 0.15 3.12 6.11 -52.49 -0.32 2.80 14 22 H 0.14 2.84 7.55 -52.49 -0.40 2.45 14 LS Contribution 242.20 15.07 3.65 3.65 Total: -1.00 -24.63 242.20 -7.47 -32.10 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -0.23 Total: 2.38 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.74 Total: -13.99 kcal Atomic # 7 Polarization: -11.72 SS G_CDS: 0.78 Total: -10.93 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -1.13 Total: -15.40 kcal Atomic # 14 Polarization: 12.68 SS G_CDS: -5.04 Total: 7.64 kcal Atomic # 17 Polarization: -2.68 SS G_CDS: -2.76 Total: -5.44 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -24.63 -7.47 -32.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166627106.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.972 kcal (2) G-P(sol) polarization free energy of solvation -24.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds