Wall clock time and date at job start Mon Mar 30 2020 07:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86800 * 120.00500 * 2 1 4 4 H 1.48500 * 109.47053 * 275.39994 * 3 2 1 5 5 H 1.48507 * 109.46868 * 35.39945 * 3 2 1 6 6 H 1.48496 * 109.47521 * 155.39537 * 3 2 1 7 7 C 1.39945 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99909 * 341.95450 * 7 2 1 9 9 C 1.41297 * 120.00102 * 161.95453 * 7 2 1 10 10 C 1.41102 * 120.65600 * 330.34067 * 9 7 2 11 11 C 1.36958 * 118.34284 * 180.24531 * 10 9 7 12 12 C 1.38757 * 119.58030 * 359.75488 * 11 10 9 13 13 Br 1.89108 * 119.33055 * 179.97438 * 12 11 10 14 14 N 1.32159 * 121.33730 * 359.97438 * 12 11 10 15 15 C 1.31662 * 121.80256 * 0.02562 * 14 12 11 16 16 Cl 1.73601 * 119.87919 * 179.97438 * 15 14 12 17 17 H 0.97004 * 119.99540 * 359.97438 * 1 2 3 18 18 H 1.08002 * 120.82872 * 359.97427 * 10 9 7 19 19 H 1.07994 * 120.20373 * 179.77145 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3760 2.1122 -1.3939 5 1 1.5017 2.6170 0.8111 6 1 3.5924 1.4099 0.5829 7 6 2.0081 -1.2120 0.0005 8 1 1.5079 -2.1241 0.2907 9 6 3.3689 -1.2423 -0.3785 10 6 3.8783 -0.3093 -1.3064 11 6 5.2035 -0.3851 -1.6439 12 6 6.0023 -1.3624 -1.0676 13 35 7.8309 -1.4611 -1.5392 14 7 5.5110 -2.2256 -0.1958 15 6 4.2456 -2.2015 0.1669 16 17 3.6530 -3.3601 1.3159 17 1 -0.4850 0.8401 0.0004 18 1 3.2381 0.4431 -1.7430 19 1 5.6240 0.3116 -2.3539 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219401690.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:40 Heat of formation + Delta-G solvation = 9.417103 kcal Electronic energy + Delta-G solvation = -10170.914501 eV Core-core repulsion = 7952.902959 eV Total energy + Delta-G solvation = -2218.011542 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.87710 -35.44985 -34.41686 -31.88337 -31.10452 -29.35720 -25.41312 -22.64182 -21.53856 -17.86201 -16.46123 -15.83926 -15.00707 -14.00812 -13.63665 -13.37672 -12.56199 -12.38752 -11.76855 -11.21653 -11.08717 -10.72957 -10.44085 -10.04459 -9.90866 -9.68198 -9.63075 -8.79785 -8.58540 -7.89610 -7.41863 -4.95149 1.91262 2.23677 2.32385 2.82080 2.94970 3.03934 3.13347 3.63232 4.07438 4.92202 5.64824 5.89193 6.06648 6.24913 6.57277 6.76367 7.09093 7.23723 7.85135 7.93016 8.23208 8.74300 9.55886 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.029576 B = 0.008938 C = 0.007124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.494061 B = 3132.077007 C = 3929.572664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.081 3.919 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.241 1.241 7 C -0.392 4.392 8 H 0.111 0.889 9 C 0.059 3.941 10 C -0.202 4.202 11 C -0.078 4.078 12 C -0.010 4.010 13 Br -0.064 7.064 14 N -0.424 5.424 15 C 0.085 3.915 16 Cl -0.062 7.062 17 H 0.295 0.705 18 H 0.124 0.876 19 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.946 1.891 -2.307 7.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.164 1.164 7 C -0.419 4.419 8 H 0.129 0.871 9 C 0.052 3.948 10 C -0.228 4.228 11 C -0.101 4.101 12 C -0.223 4.223 13 Br 0.018 6.982 14 N -0.135 5.135 15 C -0.089 4.089 16 Cl -0.034 7.034 17 H 0.106 0.894 18 H 0.142 0.858 19 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.838 1.232 -2.029 8.190 hybrid contribution -0.796 1.161 -0.167 1.417 sum 7.042 2.393 -2.197 7.756 Atomic orbital electron populations 1.69660 1.08254 1.31501 1.29510 1.26349 0.94937 1.02265 0.90796 0.86293 0.81621 0.79060 0.79585 1.18782 1.20649 1.16358 1.19754 0.92022 0.96955 1.33181 0.87148 1.18216 0.93902 0.91198 0.91452 1.21026 0.95227 1.04028 1.02492 1.21081 0.93861 0.96649 0.98484 1.21144 0.90693 1.02444 1.08013 1.96440 1.11238 1.98842 1.91692 1.65880 1.14516 1.22471 1.10612 1.21305 0.88862 0.98325 1.00423 1.98272 1.86898 1.59383 1.58820 0.89352 0.85832 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.96 13.93 55.55 0.77 -17.19 13 2 C 0.08 1.87 5.42 -17.34 -0.09 1.78 13 3 Si 0.91 18.29 24.53 -169.99 -4.17 14.12 13 4 H -0.26 -4.99 6.70 56.52 0.38 -4.61 13 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 13 6 H -0.24 -5.10 6.85 56.52 0.39 -4.71 13 7 C -0.39 -9.53 8.98 -37.78 -0.34 -9.87 13 8 H 0.11 2.80 7.43 -52.49 -0.39 2.41 13 9 C 0.06 1.41 5.12 -106.63 -0.55 0.86 13 10 C -0.20 -4.46 7.24 -38.96 -0.28 -4.74 13 11 C -0.08 -1.62 9.75 -39.85 -0.39 -2.01 13 12 C -0.01 -0.21 7.17 -17.22 -0.12 -0.34 13 13 Br -0.06 -1.16 33.85 -68.01 -2.30 -3.46 13 14 N -0.42 -10.02 10.29 -8.05 -0.08 -10.10 13 15 C 0.08 2.01 7.35 -16.61 -0.12 1.89 13 16 Cl -0.06 -1.33 27.85 -51.86 -1.44 -2.77 13 17 H 0.30 6.14 8.30 -40.82 -0.34 5.81 13 18 H 0.12 2.57 4.79 -52.49 -0.25 2.32 13 19 H 0.12 2.09 8.06 -52.49 -0.42 1.67 13 LS Contribution 210.71 15.07 3.18 3.18 Total: -1.00 -24.59 210.71 -6.18 -30.77 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: -0.24 Total: -2.12 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.89 Total: -12.42 kcal Atomic # 7 Polarization: -27.98 SS G_CDS: 0.69 Total: -27.29 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -4.17 Total: 14.12 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.44 Total: -2.77 kcal Atomic # 35 Polarization: -1.16 SS G_CDS: -2.30 Total: -3.46 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -24.59 -6.18 -30.77 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219401690.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.184 kcal (2) G-P(sol) polarization free energy of solvation -24.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds