Wall clock time and date at job start Mon Mar 30 2020 07:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86800 * 120.00500 * 2 1 4 4 H 1.48500 * 109.47053 * 275.39994 * 3 2 1 5 5 H 1.48507 * 109.46868 * 35.39945 * 3 2 1 6 6 H 1.48496 * 109.47521 * 155.39537 * 3 2 1 7 7 C 1.39945 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99909 * 341.95450 * 7 2 1 9 9 C 1.41297 * 120.00102 * 161.95453 * 7 2 1 10 10 C 1.41102 * 120.65600 * 330.34067 * 9 7 2 11 11 C 1.36958 * 118.34284 * 180.24531 * 10 9 7 12 12 C 1.38757 * 119.58030 * 359.75488 * 11 10 9 13 13 Br 1.89108 * 119.33055 * 179.97438 * 12 11 10 14 14 N 1.32159 * 121.33730 * 359.97438 * 12 11 10 15 15 C 1.31662 * 121.80256 * 0.02562 * 14 12 11 16 16 Cl 1.73601 * 119.87919 * 179.97438 * 15 14 12 17 17 H 0.97004 * 119.99540 * 359.97438 * 1 2 3 18 18 H 1.08002 * 120.82872 * 359.97427 * 10 9 7 19 19 H 1.07994 * 120.20373 * 179.77145 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3760 2.1122 -1.3939 5 1 1.5017 2.6170 0.8111 6 1 3.5924 1.4099 0.5829 7 6 2.0081 -1.2120 0.0005 8 1 1.5079 -2.1241 0.2907 9 6 3.3689 -1.2423 -0.3785 10 6 3.8783 -0.3093 -1.3064 11 6 5.2035 -0.3851 -1.6439 12 6 6.0023 -1.3624 -1.0676 13 35 7.8309 -1.4611 -1.5392 14 7 5.5110 -2.2256 -0.1958 15 6 4.2456 -2.2015 0.1669 16 17 3.6530 -3.3601 1.3159 17 1 -0.4850 0.8401 0.0004 18 1 3.2381 0.4431 -1.7430 19 1 5.6240 0.3116 -2.3539 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219401690.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:40 Heat of formation + Delta-G solvation = -4.987495 kcal Electronic energy + Delta-G solvation = -10171.539132 eV Core-core repulsion = 7952.902959 eV Total energy + Delta-G solvation = -2218.636172 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.60947 -37.17620 -36.15439 -33.62061 -32.78163 -31.01016 -27.16824 -24.36528 -23.27358 -19.62757 -18.14960 -17.59160 -16.68213 -15.65861 -15.35741 -15.07394 -14.25542 -14.04642 -13.47733 -12.85940 -12.76528 -12.40639 -12.09656 -11.74736 -11.55239 -11.25884 -11.19851 -10.51493 -10.31326 -9.60995 -9.13363 -6.75053 0.19912 0.49221 0.67074 1.23016 1.36896 1.39802 1.45596 2.01630 2.35518 3.15527 3.98636 4.27768 4.35644 4.52629 4.88371 5.04677 5.37546 5.53653 6.01839 6.18066 6.43927 6.98963 7.90257 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.029576 B = 0.008938 C = 0.007124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.494061 B = 3132.077007 C = 3929.572664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.055 3.945 3 Si 0.955 3.045 4 H -0.238 1.238 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.420 4.420 8 H 0.084 0.916 9 C 0.048 3.952 10 C -0.204 4.204 11 C -0.077 4.077 12 C -0.017 4.017 13 Br -0.026 7.026 14 N -0.442 5.442 15 C 0.059 3.941 16 Cl -0.055 7.055 17 H 0.307 0.693 18 H 0.138 0.862 19 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 3.284 -3.238 9.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.167 4.167 3 Si 0.776 3.224 4 H -0.162 1.162 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.447 4.447 8 H 0.102 0.898 9 C 0.042 3.958 10 C -0.230 4.230 11 C -0.098 4.098 12 C -0.231 4.231 13 Br 0.056 6.944 14 N -0.153 5.153 15 C -0.113 4.113 16 Cl -0.027 7.027 17 H 0.118 0.882 18 H 0.155 0.845 19 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.158 2.610 -2.959 9.972 hybrid contribution -1.058 0.658 0.084 1.248 sum 8.100 3.269 -2.876 9.196 Atomic orbital electron populations 1.69655 1.09166 1.32920 1.30390 1.26918 0.95439 1.04224 0.90143 0.85633 0.79632 0.76264 0.80888 1.16238 1.19284 1.18149 1.19659 0.92664 0.96870 1.35510 0.89763 1.18387 0.93726 0.91891 0.91835 1.21284 0.96175 1.03729 1.01794 1.21479 0.93227 0.96695 0.98440 1.21852 0.92802 1.01717 1.06763 1.96466 1.07892 1.98779 1.91231 1.65998 1.14444 1.23375 1.11435 1.21530 0.89286 0.99152 1.01313 1.98258 1.86897 1.59063 1.58528 0.88172 0.84462 0.82515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.42 13.93 21.83 0.30 -37.12 13 2 C 0.05 2.51 5.42 85.25 0.46 2.97 13 3 Si 0.95 36.01 24.53 68.60 1.68 37.69 13 4 H -0.24 -8.04 6.70 99.48 0.67 -7.37 13 5 H -0.27 -9.46 7.11 99.48 0.71 -8.76 13 6 H -0.26 -10.39 6.85 99.48 0.68 -9.70 13 7 C -0.42 -20.73 8.98 23.44 0.21 -20.51 13 8 H 0.08 4.47 7.43 -2.91 -0.02 4.45 13 9 C 0.05 2.28 5.12 -21.17 -0.11 2.17 13 10 C -0.20 -8.58 7.24 22.67 0.16 -8.42 13 11 C -0.08 -2.93 9.75 22.09 0.22 -2.72 13 12 C -0.02 -0.69 7.17 84.77 0.61 -0.08 13 13 Br -0.03 -0.86 33.85 -20.37 -0.69 -1.55 13 14 N -0.44 -20.35 10.29 -179.37 -1.85 -22.19 13 15 C 0.06 2.80 7.35 85.38 0.63 3.43 13 16 Cl -0.06 -2.42 27.85 -2.72 -0.08 -2.49 13 17 H 0.31 12.61 8.30 -92.71 -0.77 11.84 13 18 H 0.14 5.32 4.79 -2.91 -0.01 5.30 13 19 H 0.16 4.77 8.06 -2.91 -0.02 4.74 13 Total: -1.00 -51.10 210.71 2.78 -48.31 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: 1.23 Total: 0.51 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 2.18 Total: -23.16 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -1.54 Total: -59.31 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 1.68 Total: 37.69 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.08 Total: -2.49 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -0.69 Total: -1.55 kcal Total: -51.10 2.78 -48.31 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219401690.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.327 kcal (2) G-P(sol) polarization free energy of solvation -51.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds