Wall clock time and date at job start Mon Mar 30 2020 07:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86798 * 120.00296 * 2 1 4 4 H 1.48499 * 109.47370 * 90.00170 * 3 2 1 5 5 H 1.48500 * 109.46852 * 210.00000 * 3 2 1 6 6 H 1.48502 * 109.46987 * 329.99463 * 3 2 1 7 7 C 1.39951 * 119.99379 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99540 * 156.25382 * 7 2 1 9 9 C 1.41298 * 120.00446 * 336.24950 * 7 2 1 10 10 C 1.40917 * 120.67819 * 315.13479 * 9 7 2 11 11 Cl 1.73607 * 119.81745 * 359.97438 * 10 9 7 12 12 N 1.31603 * 120.36706 * 179.69952 * 10 9 7 13 13 C 1.32107 * 121.99267 * 0.58846 * 12 10 9 14 14 C 1.38493 * 121.36146 * 359.70225 * 13 12 10 15 15 C 1.38207 * 119.45436 * 359.97438 * 14 13 12 16 16 Br 1.89097 * 120.91035 * 179.97438 * 15 14 13 17 17 H 0.96999 * 120.00667 * 174.54729 * 1 2 3 18 18 H 1.08004 * 119.32073 * 179.71463 * 13 12 10 19 19 H 1.08006 * 120.27436 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4900 2.0464 1.4000 5 1 3.5399 1.4400 -0.7000 6 1 1.4399 2.6526 -0.7002 7 6 2.0080 -1.2121 0.0005 8 1 3.0195 -1.2519 -0.3761 9 6 1.3912 -2.3837 0.4939 10 6 0.6632 -2.3596 1.7002 11 17 0.5206 -0.8775 2.5930 12 7 0.0862 -3.4531 2.1510 13 6 0.1720 -4.6050 1.5099 14 6 0.8729 -4.7177 0.3208 15 6 1.4962 -3.6036 -0.2088 16 35 2.4647 -3.7108 -1.8294 17 1 -0.4851 -0.8362 -0.0798 18 1 -0.3147 -5.4769 1.9215 19 1 0.9321 -5.6683 -0.1885 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219523742.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:01 Heat of formation + Delta-G solvation = 9.073541 kcal Electronic energy + Delta-G solvation = -10390.093603 eV Core-core repulsion = 8172.067163 eV Total energy + Delta-G solvation = -2218.026440 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.74701 -35.33514 -34.30267 -31.99178 -29.81719 -28.92683 -25.45884 -22.00078 -21.66820 -18.21340 -15.92068 -15.65885 -14.61754 -14.09389 -13.59620 -13.01403 -12.16614 -12.06469 -11.50760 -11.41974 -10.87124 -10.49020 -10.19175 -10.15630 -10.04968 -9.23362 -8.93346 -8.50387 -8.28947 -7.74829 -7.33315 -4.80606 2.07959 2.28010 2.63026 3.11813 3.15913 3.29296 3.30438 3.94059 4.41107 4.95429 5.69917 5.85644 6.23451 6.33033 6.74890 6.96316 7.30062 7.60696 7.73280 8.10669 8.49313 8.97461 9.88757 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.013557 C = 0.008972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.883602 B = 2064.842411 C = 3120.144572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.047 3.953 3 Si 1.062 2.938 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.073 3.927 10 C 0.096 3.904 11 Cl -0.049 7.049 12 N -0.453 5.453 13 C -0.025 4.025 14 C -0.103 4.103 15 C -0.147 4.147 16 Br -0.073 7.073 17 H 0.294 0.706 18 H 0.139 0.861 19 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 -3.304 -2.543 5.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.177 4.177 3 Si 0.885 3.115 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.519 4.519 8 H 0.112 0.888 9 C 0.065 3.935 10 C -0.077 4.077 11 Cl -0.021 7.021 12 N -0.163 5.163 13 C -0.180 4.180 14 C -0.125 4.125 15 C -0.233 4.233 16 Br 0.012 6.988 17 H 0.106 0.894 18 H 0.156 0.844 19 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.979 -1.577 -2.257 4.056 hybrid contribution 0.298 -1.761 -0.331 1.816 sum 3.277 -3.338 -2.588 5.346 Atomic orbital electron populations 1.70395 1.08076 1.33892 1.26034 1.26915 0.95430 1.03954 0.91449 0.83639 0.75667 0.73631 0.78582 1.19548 1.19781 1.19866 1.20541 1.02503 0.92686 1.36188 0.88801 1.17950 0.91993 0.93040 0.90526 1.21842 1.05905 0.87583 0.92342 1.98293 1.96744 1.31517 1.75527 1.66329 1.17091 0.98640 1.34235 1.21596 1.06743 0.94210 0.95454 1.21604 0.97044 0.97092 0.96748 1.21973 1.08893 0.97344 0.95102 1.96377 1.74089 1.98520 1.29830 0.89394 0.84380 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.36 11.85 55.55 0.66 -18.70 13 2 C 0.05 1.13 3.64 -17.34 -0.06 1.07 13 3 Si 1.06 21.09 29.99 -169.99 -5.10 16.00 13 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 13 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 13 6 H -0.27 -5.36 7.11 56.52 0.40 -4.95 13 7 C -0.49 -12.10 7.77 -37.78 -0.29 -12.40 13 8 H 0.09 2.29 7.72 -52.48 -0.40 1.88 13 9 C 0.07 1.81 4.80 -106.61 -0.51 1.30 13 10 C 0.10 2.39 6.56 -16.64 -0.11 2.28 13 11 Cl -0.05 -1.17 25.30 -51.86 -1.31 -2.48 13 12 N -0.45 -10.88 10.32 -9.68 -0.10 -10.98 13 13 C -0.03 -0.54 11.17 -17.34 -0.19 -0.73 13 14 C -0.10 -2.12 9.87 -39.50 -0.39 -2.51 13 15 C -0.15 -3.33 6.32 -38.48 -0.24 -3.58 13 16 Br -0.07 -1.44 32.68 -68.01 -2.22 -3.66 13 17 H 0.29 7.81 7.35 -40.82 -0.30 7.51 13 18 H 0.14 2.44 8.06 -52.48 -0.42 2.02 13 19 H 0.12 2.05 8.06 -52.48 -0.42 1.62 13 LS Contribution 212.77 15.07 3.21 3.21 Total: -1.00 -25.64 212.77 -7.02 -32.66 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: -0.35 Total: -1.48 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -1.80 Total: -14.56 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.56 Total: -29.68 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.10 Total: 16.00 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.31 Total: -2.48 kcal Atomic # 35 Polarization: -1.44 SS G_CDS: -2.22 Total: -3.66 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -25.64 -7.02 -32.66 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219523742.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.731 kcal (2) G-P(sol) polarization free energy of solvation -25.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds