Wall clock time and date at job start Mon Mar 30 2020 06:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46872 * 2 1 4 4 C 1.50697 * 109.47254 * 120.00434 * 2 1 3 5 5 H 1.08001 * 120.00218 * 119.72192 * 4 2 1 6 6 C 1.37873 * 119.99717 * 299.99666 * 4 2 1 7 7 N 1.31515 * 120.00460 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99874 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46976 * 90.00099 * 8 6 4 10 10 H 1.48496 * 109.46970 * 210.00326 * 8 6 4 11 11 H 1.48499 * 109.46847 * 329.99995 * 8 6 4 12 12 N 1.46899 * 109.46915 * 240.00316 * 2 1 3 13 13 C 1.47914 * 111.00231 * 69.84602 * 12 2 1 14 14 C 1.54602 * 102.62311 * 265.48068 * 13 12 2 15 15 H 1.09000 * 110.89584 * 92.87270 * 14 13 12 16 16 C 1.53002 * 110.73669 * 216.12857 * 14 13 12 17 17 C 1.53004 * 109.46973 * 288.02545 * 16 14 13 18 18 N 1.46897 * 109.47264 * 185.06361 * 17 16 14 19 19 C 1.51576 * 102.83285 * 334.45987 * 14 13 12 20 20 C 1.37923 * 131.55637 * 196.32848 * 19 14 13 21 21 C 1.38301 * 120.07862 * 179.27903 * 20 19 14 22 22 C 1.38306 * 119.88057 * 0.02562 * 21 20 19 23 23 C 1.37903 * 120.26826 * 0.13410 * 22 21 20 24 24 C 1.38959 * 107.95836 * 15.95042 * 19 14 13 25 25 H 1.08995 * 109.46727 * 299.99432 * 1 2 3 26 26 H 1.08997 * 109.47062 * 59.99781 * 1 2 3 27 27 H 1.08997 * 109.46872 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00572 * 179.97438 * 7 6 4 29 29 H 1.09006 * 110.77615 * 23.76031 * 13 12 2 30 30 H 1.09002 * 110.78064 * 147.19331 * 13 12 2 31 31 H 1.08993 * 109.47671 * 48.02356 * 16 14 13 32 32 H 1.08998 * 109.47227 * 168.03513 * 16 14 13 33 33 H 1.09005 * 109.47334 * 305.06297 * 17 16 14 34 34 H 1.09004 * 109.47325 * 65.06461 * 17 16 14 35 35 H 1.00901 * 111.00560 * 180.02562 * 18 17 16 36 36 H 1.00898 * 111.00219 * 303.95489 * 18 17 16 37 37 H 1.08005 * 119.96007 * 359.30933 * 20 19 14 38 38 H 1.08003 * 120.05457 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.86217 * 180.15965 * 22 21 20 40 40 H 1.08004 * 119.90079 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6496 -1.5912 1.1313 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3227 -1.1197 4.0079 9 1 3.6307 -0.5442 4.4117 10 1 1.3446 -0.9492 5.1122 11 1 2.4882 -2.5655 3.7120 12 7 2.0197 -0.6924 -1.1995 13 6 1.7478 0.1011 -2.4178 14 6 0.4054 -0.4862 -2.9109 15 1 -0.4363 0.0828 -2.5161 16 6 0.3605 -0.5259 -4.4398 17 6 0.2104 0.8967 -4.9827 18 7 0.0456 0.8492 -6.4416 19 6 0.4210 -1.8893 -2.3378 20 6 -0.3234 -3.0100 -2.6415 21 6 -0.0982 -4.1957 -1.9661 22 6 0.8746 -4.2557 -0.9848 23 6 1.6193 -3.1371 -0.6750 24 6 1.3967 -1.9377 -1.3496 25 1 -0.3632 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.7083 1.1607 3.4844 29 1 1.6413 1.1584 -2.1748 30 1 2.5317 -0.0492 -3.1601 31 1 1.2836 -0.9640 -4.8192 32 1 -0.4878 -1.1293 -4.7628 33 1 -0.6645 1.3667 -4.5334 34 1 1.1006 1.4755 -4.7363 35 1 -0.0552 1.7772 -6.8246 36 1 0.8137 0.3604 -6.8766 37 1 -1.0826 -2.9618 -3.4081 38 1 -0.6816 -5.0729 -2.2040 39 1 1.0519 -5.1824 -0.4594 40 1 2.3777 -3.1907 0.0920 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221001262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:38 Heat of formation + Delta-G solvation = 38.609953 kcal Electronic energy + Delta-G solvation = -20142.113268 eV Core-core repulsion = 17342.570034 eV Total energy + Delta-G solvation = -2799.543234 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51462 -36.50151 -35.68817 -33.42727 -31.91482 -29.63959 -29.26518 -28.19294 -26.11136 -24.94157 -22.74165 -22.14452 -21.22742 -19.89156 -19.42239 -16.77085 -15.87360 -15.65283 -15.40244 -14.91271 -14.80051 -14.51545 -14.07424 -13.87605 -13.26352 -12.82085 -12.47387 -12.32471 -12.15072 -11.85007 -11.60793 -11.42502 -11.24913 -10.96145 -10.93339 -10.82537 -10.64550 -10.39570 -10.16086 -10.07906 -9.81725 -8.99689 -8.80134 -8.49361 -8.34539 -8.17585 -6.98023 -6.04691 -4.08320 1.97277 2.07974 3.29695 3.36063 3.39387 4.30086 4.38785 4.48993 4.66545 4.94094 5.07154 5.27544 5.31970 5.45416 5.49287 5.58454 5.62239 5.67764 5.79334 5.95626 6.08476 6.14080 6.24899 6.29568 6.39337 6.47142 6.69012 6.73429 6.89431 6.96738 7.00374 7.01072 7.10072 7.13954 7.30256 7.38024 7.51168 7.72887 7.80110 8.11429 8.32736 8.46028 8.95560 9.56214 11.02437 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.006811 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.083254 B = 4109.843522 C = 5002.892274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.216 3.784 3 H 0.044 0.956 4 C -0.500 4.500 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.495 5.495 13 C 0.054 3.946 14 C -0.074 4.074 15 H 0.090 0.910 16 C -0.100 4.100 17 C 0.059 3.941 18 N -0.854 5.854 19 C -0.146 4.146 20 C -0.093 4.093 21 C -0.155 4.155 22 C -0.110 4.110 23 C -0.106 4.106 24 C 0.147 3.853 25 H 0.088 0.912 26 H 0.014 0.986 27 H 0.033 0.967 28 H 0.261 0.739 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.339 0.661 36 H 0.338 0.662 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 -2.961 -12.432 12.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.113 3.887 3 H 0.061 0.939 4 C -0.539 4.539 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.211 5.211 13 C -0.074 4.074 14 C -0.093 4.093 15 H 0.108 0.892 16 C -0.139 4.139 17 C -0.071 4.071 18 N -0.382 5.382 19 C -0.149 4.149 20 C -0.112 4.112 21 C -0.174 4.174 22 C -0.129 4.129 23 C -0.126 4.126 24 C 0.049 3.951 25 H 0.106 0.894 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.644 -3.233 -12.008 12.544 hybrid contribution 0.293 0.276 0.876 0.964 sum -1.351 -2.957 -11.132 11.597 Atomic orbital electron populations 1.22561 0.99779 0.99935 1.00703 1.19484 0.90351 0.93969 0.84937 0.93851 1.21109 1.30833 1.12480 0.89462 0.91707 1.24894 0.95103 0.95129 0.98965 1.69876 1.36879 1.23119 1.23494 0.86521 0.78501 0.80095 0.82480 1.20669 1.21322 1.19825 1.60497 1.55441 1.00930 1.04212 1.23155 0.94167 0.97811 0.92245 1.21433 1.00031 0.93378 0.94485 0.89216 1.21500 1.02245 0.96088 0.94033 1.21861 1.00212 0.97328 0.87747 1.58753 1.51060 1.23240 1.05184 1.20884 0.97720 0.94976 1.01342 1.20192 0.99141 0.91988 0.99880 1.20794 1.00341 0.97420 0.98861 1.20828 0.96439 0.97819 0.97771 1.20632 1.01230 0.90625 1.00122 1.19441 0.90514 0.91714 0.93390 0.89367 0.96765 0.94779 0.92948 0.90605 0.90940 0.92147 0.91243 0.91054 0.95228 0.84950 0.84972 0.87326 0.86917 0.86644 0.85770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 7.73 37.16 0.29 -3.84 16 2 C 0.22 5.35 2.22 -68.86 -0.15 5.20 16 3 H 0.04 1.17 7.85 -51.93 -0.41 0.76 16 4 C -0.50 -13.51 7.92 -34.44 -0.27 -13.79 16 5 H 0.06 1.75 5.97 -52.49 -0.31 1.44 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.49 -10.76 5.05 -162.79 -0.82 -11.59 16 13 C 0.05 0.96 5.76 -2.42 -0.01 0.94 16 14 C -0.07 -1.20 2.20 -90.50 -0.20 -1.40 16 15 H 0.09 1.55 6.07 -51.93 -0.32 1.23 16 16 C -0.10 -1.32 4.87 -26.73 -0.13 -1.45 16 17 C 0.06 0.68 6.62 -3.82 -0.03 0.66 16 18 N -0.85 -8.55 9.62 -10.37 -0.10 -8.65 16 19 C -0.15 -2.68 4.81 -104.04 -0.50 -3.18 16 20 C -0.09 -1.55 9.78 -39.67 -0.39 -1.93 16 21 C -0.16 -2.48 10.06 -39.53 -0.40 -2.87 16 22 C -0.11 -1.89 10.02 -39.68 -0.40 -2.28 16 23 C -0.11 -2.14 9.21 -39.27 -0.36 -2.51 16 24 C 0.15 3.05 4.07 -83.41 -0.34 2.71 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 26 H 0.01 0.30 5.24 -51.93 -0.27 0.02 16 27 H 0.03 0.84 6.68 -51.93 -0.35 0.49 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.08 1.32 7.60 -51.93 -0.39 0.92 16 30 H 0.07 1.17 7.78 -51.93 -0.40 0.77 16 31 H 0.06 0.79 7.94 -51.93 -0.41 0.38 16 32 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.33 7.84 -51.93 -0.41 -0.07 16 35 H 0.34 2.78 9.08 -39.29 -0.36 2.42 16 36 H 0.34 2.99 8.99 -39.29 -0.35 2.64 16 37 H 0.11 1.55 7.90 -52.48 -0.41 1.14 16 38 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 39 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.12 2.60 6.60 -52.48 -0.35 2.25 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -28.79 309.45 -9.51 -38.30 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.87 Total: 7.79 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.99 Total: -22.19 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.29 Total: -44.80 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.79 -9.51 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221001262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.912 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds