Wall clock time and date at job start Mon Mar 30 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46872 * 2 1 4 4 C 1.50697 * 109.47254 * 120.00434 * 2 1 3 5 5 H 1.08001 * 120.00218 * 119.72192 * 4 2 1 6 6 C 1.37873 * 119.99717 * 299.99666 * 4 2 1 7 7 N 1.31515 * 120.00460 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99874 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46976 * 90.00099 * 8 6 4 10 10 H 1.48496 * 109.46970 * 210.00326 * 8 6 4 11 11 H 1.48499 * 109.46847 * 329.99995 * 8 6 4 12 12 N 1.46899 * 109.46915 * 240.00316 * 2 1 3 13 13 C 1.47914 * 111.00231 * 69.84602 * 12 2 1 14 14 C 1.54602 * 102.62311 * 265.48068 * 13 12 2 15 15 H 1.09000 * 110.89584 * 92.87270 * 14 13 12 16 16 C 1.53002 * 110.73669 * 216.12857 * 14 13 12 17 17 C 1.53004 * 109.46973 * 288.02545 * 16 14 13 18 18 N 1.46897 * 109.47264 * 185.06361 * 17 16 14 19 19 C 1.51576 * 102.83285 * 334.45987 * 14 13 12 20 20 C 1.37923 * 131.55637 * 196.32848 * 19 14 13 21 21 C 1.38301 * 120.07862 * 179.27903 * 20 19 14 22 22 C 1.38306 * 119.88057 * 0.02562 * 21 20 19 23 23 C 1.37903 * 120.26826 * 0.13410 * 22 21 20 24 24 C 1.38959 * 107.95836 * 15.95042 * 19 14 13 25 25 H 1.08995 * 109.46727 * 299.99432 * 1 2 3 26 26 H 1.08997 * 109.47062 * 59.99781 * 1 2 3 27 27 H 1.08997 * 109.46872 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00572 * 179.97438 * 7 6 4 29 29 H 1.09006 * 110.77615 * 23.76031 * 13 12 2 30 30 H 1.09002 * 110.78064 * 147.19331 * 13 12 2 31 31 H 1.08993 * 109.47671 * 48.02356 * 16 14 13 32 32 H 1.08998 * 109.47227 * 168.03513 * 16 14 13 33 33 H 1.09005 * 109.47334 * 305.06297 * 17 16 14 34 34 H 1.09004 * 109.47325 * 65.06461 * 17 16 14 35 35 H 1.00901 * 111.00560 * 180.02562 * 18 17 16 36 36 H 1.00898 * 111.00219 * 303.95489 * 18 17 16 37 37 H 1.08005 * 119.96007 * 359.30933 * 20 19 14 38 38 H 1.08003 * 120.05457 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.86217 * 180.15965 * 22 21 20 40 40 H 1.08004 * 119.90079 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6496 -1.5912 1.1313 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3227 -1.1197 4.0079 9 1 3.6307 -0.5442 4.4117 10 1 1.3446 -0.9492 5.1122 11 1 2.4882 -2.5655 3.7120 12 7 2.0197 -0.6924 -1.1995 13 6 1.7478 0.1011 -2.4178 14 6 0.4054 -0.4862 -2.9109 15 1 -0.4363 0.0828 -2.5161 16 6 0.3605 -0.5259 -4.4398 17 6 0.2104 0.8967 -4.9827 18 7 0.0456 0.8492 -6.4416 19 6 0.4210 -1.8893 -2.3378 20 6 -0.3234 -3.0100 -2.6415 21 6 -0.0982 -4.1957 -1.9661 22 6 0.8746 -4.2557 -0.9848 23 6 1.6193 -3.1371 -0.6750 24 6 1.3967 -1.9377 -1.3496 25 1 -0.3632 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.7083 1.1607 3.4844 29 1 1.6413 1.1584 -2.1748 30 1 2.5317 -0.0492 -3.1601 31 1 1.2836 -0.9640 -4.8192 32 1 -0.4878 -1.1293 -4.7628 33 1 -0.6645 1.3667 -4.5334 34 1 1.1006 1.4755 -4.7363 35 1 -0.0552 1.7772 -6.8246 36 1 0.8137 0.3604 -6.8766 37 1 -1.0826 -2.9618 -3.4081 38 1 -0.6816 -5.0729 -2.2040 39 1 1.0519 -5.1824 -0.4594 40 1 2.3777 -3.1907 0.0920 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221001262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:37 Heat of formation + Delta-G solvation = 19.974568 kcal Electronic energy + Delta-G solvation = -20142.921359 eV Core-core repulsion = 17342.570034 eV Total energy + Delta-G solvation = -2800.351325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98633 -37.88413 -36.90486 -35.12487 -33.39586 -31.29629 -30.56535 -29.74162 -27.68194 -26.71862 -24.02618 -23.64468 -22.54715 -21.30336 -20.98993 -18.60364 -17.35989 -16.84594 -16.68903 -16.52097 -16.13905 -15.91610 -15.52270 -15.24192 -14.69149 -14.28257 -14.08806 -13.84668 -13.54050 -13.24722 -13.13729 -12.90425 -12.83195 -12.73715 -12.68350 -12.28189 -12.21437 -11.96638 -11.81474 -11.66359 -11.37872 -10.90712 -10.51923 -9.98992 -9.60094 -9.56231 -8.53028 -8.13436 -6.23163 0.58891 0.66603 1.39719 1.40261 1.50394 2.40201 2.92235 3.16314 3.18713 3.51751 3.76624 3.94083 4.04710 4.26525 4.31107 4.34987 4.41338 4.47624 4.58381 4.71160 4.78075 4.79717 4.80930 4.88024 4.97614 5.03803 5.09245 5.22097 5.26647 5.33015 5.42812 5.62810 5.65517 5.72209 5.77480 5.89089 6.04725 6.23268 6.24264 6.53486 6.62610 6.68332 6.88610 7.44823 8.92798 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.006811 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.083254 B = 4109.843522 C = 5002.892274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.222 3.778 3 H 0.014 0.986 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.512 5.512 13 C 0.053 3.947 14 C -0.064 4.064 15 H 0.079 0.921 16 C -0.087 4.087 17 C 0.063 3.937 18 N -0.856 5.856 19 C -0.151 4.151 20 C -0.095 4.095 21 C -0.144 4.144 22 C -0.112 4.112 23 C -0.133 4.133 24 C 0.110 3.890 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.022 0.978 28 H 0.261 0.739 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.350 0.650 36 H 0.346 0.654 37 H 0.138 0.862 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 -4.384 -14.012 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.118 3.882 3 H 0.032 0.968 4 C -0.551 4.551 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.229 5.229 13 C -0.074 4.074 14 C -0.083 4.083 15 H 0.097 0.903 16 C -0.125 4.125 17 C -0.067 4.067 18 N -0.387 5.387 19 C -0.154 4.154 20 C -0.114 4.114 21 C -0.162 4.162 22 C -0.131 4.131 23 C -0.153 4.153 24 C 0.014 3.986 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.159 0.841 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.505 -4.664 -13.617 14.610 hybrid contribution 0.555 0.661 1.296 1.557 sum -1.950 -4.004 -12.321 13.101 Atomic orbital electron populations 1.22289 0.99408 0.98859 1.00247 1.19182 0.90434 0.92439 0.86145 0.96849 1.21367 1.30663 1.12279 0.90758 0.92541 1.25624 0.95365 0.95829 1.01636 1.69996 1.37805 1.24228 1.24001 0.85600 0.78059 0.79160 0.79138 1.20161 1.20913 1.19393 1.60367 1.56349 1.01815 1.04364 1.23240 0.95770 0.97248 0.91153 1.21320 0.98409 0.91989 0.96602 0.90277 1.21365 1.02509 0.97238 0.91419 1.21737 1.00094 0.96159 0.88755 1.58704 1.51483 1.24275 1.04203 1.21153 0.97219 0.96376 1.00656 1.20604 0.99056 0.91470 1.00243 1.21264 0.99287 0.98490 0.97172 1.21143 0.96031 0.97726 0.98172 1.20741 1.02036 0.92027 1.00495 1.19606 0.92408 0.91312 0.95315 0.92197 0.94652 0.95894 0.92963 0.90939 0.89380 0.91820 0.90879 0.91559 0.95092 0.83680 0.84083 0.84440 0.83067 0.84133 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.38 7.73 71.98 0.56 -6.82 16 2 C 0.22 11.44 2.22 44.17 0.10 11.54 16 3 H 0.01 0.77 7.85 -2.39 -0.02 0.75 16 4 C -0.51 -28.60 7.92 25.60 0.20 -28.39 16 5 H 0.06 3.18 5.97 -2.91 -0.02 3.16 16 6 C 0.01 0.78 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 8 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.51 -22.83 5.05 -668.96 -3.38 -26.21 16 13 C 0.05 1.87 5.76 86.65 0.50 2.37 16 14 C -0.06 -1.99 2.20 -10.71 -0.02 -2.02 16 15 H 0.08 2.65 6.07 -2.39 -0.01 2.64 16 16 C -0.09 -2.10 4.87 30.60 0.15 -1.95 16 17 C 0.06 1.34 6.62 86.31 0.57 1.91 16 18 N -0.86 -15.00 9.62 -186.71 -1.80 -16.80 16 19 C -0.15 -5.34 4.81 -19.49 -0.09 -5.44 16 20 C -0.10 -2.87 9.78 22.21 0.22 -2.65 16 21 C -0.14 -4.08 10.06 22.30 0.22 -3.86 16 22 C -0.11 -3.65 10.02 22.21 0.22 -3.43 16 23 C -0.13 -5.42 9.21 22.47 0.21 -5.21 16 24 C 0.11 4.61 4.07 38.28 0.16 4.76 16 25 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 26 H 0.03 1.54 5.24 -2.39 -0.01 1.53 16 27 H 0.02 1.14 6.68 -2.39 -0.02 1.12 16 28 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.07 2.56 7.60 -2.38 -0.02 2.54 16 30 H 0.09 2.80 7.78 -2.39 -0.02 2.78 16 31 H 0.06 1.51 7.94 -2.39 -0.02 1.49 16 32 H 0.07 1.74 7.85 -2.39 -0.02 1.72 16 33 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.03 0.64 7.84 -2.38 -0.02 0.63 16 35 H 0.35 4.91 9.08 -89.69 -0.81 4.10 16 36 H 0.35 5.21 8.99 -89.70 -0.81 4.40 16 37 H 0.14 3.33 7.90 -2.91 -0.02 3.31 16 38 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 39 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 40 H 0.10 4.46 6.60 -2.91 -0.02 4.44 16 Total: -1.00 -63.23 309.45 -0.04 -63.27 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.57 Total: 24.27 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 3.44 Total: -37.95 kcal Atomic # 7 Polarization: -91.03 SS G_CDS: -4.93 Total: -95.96 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.23 -0.04 -63.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221001262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.246 kcal (2) G-P(sol) polarization free energy of solvation -63.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds