Wall clock time and date at job start Mon Mar 30 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47024 * 2 1 4 4 C 1.50702 * 109.46568 * 239.99977 * 2 1 3 5 5 H 1.08007 * 119.99448 * 244.95895 * 4 2 1 6 6 C 1.37870 * 120.00316 * 64.96326 * 4 2 1 7 7 N 1.31519 * 119.99880 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47190 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47042 * 119.99972 * 8 6 4 11 11 H 1.48498 * 109.47064 * 239.99721 * 8 6 4 12 12 N 1.46893 * 109.47047 * 120.00066 * 2 1 3 13 13 C 1.47909 * 111.00339 * 62.60466 * 12 2 1 14 14 C 1.54600 * 102.62874 * 148.99788 * 13 12 2 15 15 H 1.09006 * 110.74452 * 92.90568 * 14 13 12 16 16 C 1.52995 * 110.74266 * 216.06024 * 14 13 12 17 17 C 1.53000 * 109.47336 * 295.46705 * 16 14 13 18 18 N 1.46901 * 109.47229 * 185.09664 * 17 16 14 19 19 C 1.51569 * 102.81724 * 334.39305 * 14 13 12 20 20 C 1.37921 * 131.56459 * 196.20318 * 19 14 13 21 21 C 1.38306 * 120.07726 * 179.76551 * 20 19 14 22 22 C 1.38299 * 119.88754 * 359.97438 * 21 20 19 23 23 C 1.37913 * 120.26389 * 0.09412 * 22 21 20 24 24 C 1.38963 * 107.95019 * 16.20212 * 19 14 13 25 25 H 1.09002 * 109.47502 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47021 * 300.00270 * 1 2 3 27 27 H 1.09001 * 109.47409 * 59.99832 * 1 2 3 28 28 H 0.96999 * 119.99373 * 179.97438 * 7 6 4 29 29 H 1.09000 * 110.77339 * 30.71191 * 13 12 2 30 30 H 1.09004 * 110.93469 * 267.35706 * 13 12 2 31 31 H 1.09000 * 109.47036 * 175.46902 * 16 14 13 32 32 H 1.09002 * 109.47462 * 55.46980 * 16 14 13 33 33 H 1.08998 * 109.46972 * 65.09825 * 17 16 14 34 34 H 1.09000 * 109.47173 * 305.09878 * 17 16 14 35 35 H 1.00903 * 110.99721 * 180.02562 * 18 17 16 36 36 H 1.00896 * 110.99923 * 303.94897 * 18 17 16 37 37 H 1.07995 * 119.96317 * 359.74686 * 20 19 14 38 38 H 1.08003 * 120.05771 * 179.97438 * 21 20 19 39 39 H 1.07991 * 119.87167 * 180.14540 * 22 21 20 40 40 H 1.07993 * 119.90347 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5854 -1.6330 -1.1334 6 6 1.7856 -0.1828 -2.4801 7 7 1.1115 0.9403 -2.5984 8 14 2.4087 -1.0631 -4.0053 9 1 3.1322 -2.2964 -3.6042 10 1 1.2588 -1.4244 -4.8729 11 1 3.3298 -0.1687 -4.7515 12 7 2.0196 -0.6925 1.1994 13 6 1.5973 -2.1100 1.2026 14 6 2.7547 -2.8057 1.9553 15 1 2.5342 -2.8783 3.0204 16 6 3.0297 -4.1904 1.3654 17 6 1.8119 -5.0899 1.5861 18 7 2.1201 -6.4519 1.1300 19 6 3.9247 -1.8746 1.7076 20 6 5.2844 -2.0554 1.8513 21 6 6.1565 -1.0260 1.5469 22 6 5.6629 0.1852 1.0976 23 6 4.3041 0.3716 0.9535 24 6 3.4183 -0.6597 1.2620 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.9383 1.3117 -3.4776 29 1 1.5137 -2.4908 0.1848 30 1 0.6567 -2.2349 1.7391 31 1 3.8987 -4.6284 1.8565 32 1 3.2244 -4.0980 0.2969 33 1 0.9653 -4.7003 1.0209 34 1 1.5623 -5.1097 2.6470 35 1 1.3306 -7.0656 1.2649 36 1 2.4170 -6.4518 0.1657 37 1 5.6686 -3.0018 2.2022 38 1 7.2212 -1.1678 1.6599 39 1 6.3443 0.9880 0.8578 40 1 3.9250 1.3197 0.6018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221001320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:41 Heat of formation + Delta-G solvation = 26.851624 kcal Electronic energy + Delta-G solvation = -20187.981304 eV Core-core repulsion = 17387.928190 eV Total energy + Delta-G solvation = -2800.053114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21645 -36.44027 -35.69401 -33.48252 -32.01939 -29.93878 -29.29991 -27.74513 -25.94178 -25.16712 -22.84696 -22.02033 -20.83416 -20.11296 -19.24849 -16.64302 -15.97322 -15.58720 -15.34473 -15.15975 -14.82994 -14.30198 -13.95113 -13.64711 -13.22150 -12.99535 -12.58340 -12.25829 -11.98772 -11.61464 -11.58132 -11.45499 -11.25975 -11.04985 -10.86173 -10.68906 -10.40450 -10.33761 -10.16777 -10.11477 -9.89705 -9.56025 -8.69870 -8.68241 -8.49908 -8.14393 -6.84450 -6.09749 -4.21322 2.04673 2.15612 3.20822 3.29836 3.33740 4.31787 4.37615 4.56791 4.87204 5.03050 5.13704 5.18752 5.34551 5.56992 5.59745 5.65364 5.68389 5.80802 5.91793 6.03641 6.20865 6.24569 6.33196 6.41348 6.48876 6.59126 6.69489 6.71905 6.85512 6.96632 7.03793 7.11146 7.16158 7.19700 7.36336 7.41024 7.55281 7.63576 7.82264 7.94505 8.21142 8.24469 8.85418 9.45740 10.92117 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.008922 C = 0.007181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.027567 B = 3137.539317 C = 3897.993361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.202 3.798 3 H 0.048 0.952 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.071 3.929 7 N -0.886 5.886 8 Si 0.888 3.112 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 N -0.483 5.483 13 C 0.055 3.945 14 C -0.047 4.047 15 H 0.080 0.920 16 C -0.104 4.104 17 C 0.059 3.941 18 N -0.854 5.854 19 C -0.154 4.154 20 C -0.082 4.082 21 C -0.170 4.170 22 C -0.097 4.097 23 C -0.131 4.131 24 C 0.153 3.847 25 H 0.028 0.972 26 H 0.018 0.982 27 H 0.080 0.920 28 H 0.262 0.738 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.338 0.662 36 H 0.340 0.660 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 -7.359 6.926 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.098 3.902 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.132 4.132 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 N -0.196 5.196 13 C -0.071 4.071 14 C -0.067 4.067 15 H 0.098 0.902 16 C -0.142 4.142 17 C -0.071 4.071 18 N -0.383 5.383 19 C -0.158 4.158 20 C -0.101 4.101 21 C -0.190 4.190 22 C -0.116 4.116 23 C -0.152 4.152 24 C 0.052 3.948 25 H 0.048 0.952 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.339 -6.932 7.761 10.928 hybrid contribution -0.217 -0.497 -2.296 2.359 sum 3.122 -7.429 5.465 9.737 Atomic orbital electron populations 1.21775 0.97461 0.99272 1.00310 1.19529 0.92450 0.94823 0.83417 0.93390 1.21608 1.35446 1.09220 0.91265 0.92292 1.24869 0.94713 0.94773 0.98879 1.69913 1.39652 1.19077 1.23753 0.86593 0.78677 0.79959 0.83206 1.19784 1.20980 1.20838 1.60827 1.05547 1.13461 1.39739 1.23226 0.96590 0.86508 1.00778 1.20846 0.93025 0.93105 0.99690 0.90152 1.21539 0.97784 0.93438 1.01485 1.21843 0.96965 0.88067 1.00245 1.58785 1.42054 1.10211 1.27232 1.20387 0.93748 0.95316 1.06304 1.20175 0.91626 0.98298 1.00014 1.20717 0.98517 0.94129 1.05614 1.20742 0.94601 0.97095 0.99152 1.20438 0.92125 0.99231 1.03386 1.19565 0.89432 0.93125 0.92635 0.95242 0.96310 0.90138 0.92808 0.90311 0.90872 0.91320 0.91804 0.95014 0.91244 0.85088 0.84802 0.87323 0.87052 0.86800 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.96 37.16 0.33 -2.69 16 2 C 0.20 4.92 2.07 -68.87 -0.14 4.78 16 3 H 0.05 1.30 7.19 -51.93 -0.37 0.92 16 4 C -0.54 -14.01 6.81 -34.44 -0.23 -14.25 16 5 H 0.06 1.59 6.48 -52.48 -0.34 1.25 16 6 C 0.07 1.89 5.32 -17.82 -0.09 1.79 16 7 N -0.89 -24.46 11.69 55.43 0.65 -23.82 16 8 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.48 -10.47 5.06 -162.80 -0.82 -11.29 16 13 C 0.06 1.04 4.00 -2.43 -0.01 1.04 16 14 C -0.05 -0.79 3.13 -90.51 -0.28 -1.07 16 15 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 16 C -0.10 -1.53 4.83 -26.73 -0.13 -1.66 16 17 C 0.06 0.76 6.53 -3.82 -0.02 0.73 16 18 N -0.85 -9.76 9.62 -10.37 -0.10 -9.86 16 19 C -0.15 -2.89 5.66 -104.04 -0.59 -3.48 16 20 C -0.08 -1.39 9.88 -39.67 -0.39 -1.79 16 21 C -0.17 -2.79 10.06 -39.53 -0.40 -3.19 16 22 C -0.10 -1.70 10.02 -39.68 -0.40 -2.10 16 23 C -0.13 -2.68 9.49 -39.26 -0.37 -3.05 16 24 C 0.15 3.23 5.04 -83.40 -0.42 2.81 16 25 H 0.03 0.64 7.26 -51.93 -0.38 0.26 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 2.04 6.47 -51.93 -0.34 1.71 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.08 1.65 5.76 -51.93 -0.30 1.35 16 30 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 33 H 0.03 0.42 7.60 -51.93 -0.39 0.02 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.34 3.17 9.08 -39.29 -0.36 2.81 16 36 H 0.34 3.74 8.99 -39.29 -0.35 3.39 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.12 2.47 7.31 -52.49 -0.38 2.09 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -28.01 316.49 -9.83 -37.84 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.15 Total: 8.53 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -3.16 Total: -22.13 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.28 Total: -44.97 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.01 -9.83 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221001320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.691 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds