Wall clock time and date at job start Mon Mar 30 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47024 * 2 1 4 4 C 1.50702 * 109.46568 * 239.99977 * 2 1 3 5 5 H 1.08007 * 119.99448 * 244.95895 * 4 2 1 6 6 C 1.37870 * 120.00316 * 64.96326 * 4 2 1 7 7 N 1.31519 * 119.99880 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47190 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47042 * 119.99972 * 8 6 4 11 11 H 1.48498 * 109.47064 * 239.99721 * 8 6 4 12 12 N 1.46893 * 109.47047 * 120.00066 * 2 1 3 13 13 C 1.47909 * 111.00339 * 62.60466 * 12 2 1 14 14 C 1.54600 * 102.62874 * 148.99788 * 13 12 2 15 15 H 1.09006 * 110.74452 * 92.90568 * 14 13 12 16 16 C 1.52995 * 110.74266 * 216.06024 * 14 13 12 17 17 C 1.53000 * 109.47336 * 295.46705 * 16 14 13 18 18 N 1.46901 * 109.47229 * 185.09664 * 17 16 14 19 19 C 1.51569 * 102.81724 * 334.39305 * 14 13 12 20 20 C 1.37921 * 131.56459 * 196.20318 * 19 14 13 21 21 C 1.38306 * 120.07726 * 179.76551 * 20 19 14 22 22 C 1.38299 * 119.88754 * 359.97438 * 21 20 19 23 23 C 1.37913 * 120.26389 * 0.09412 * 22 21 20 24 24 C 1.38963 * 107.95019 * 16.20212 * 19 14 13 25 25 H 1.09002 * 109.47502 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47021 * 300.00270 * 1 2 3 27 27 H 1.09001 * 109.47409 * 59.99832 * 1 2 3 28 28 H 0.96999 * 119.99373 * 179.97438 * 7 6 4 29 29 H 1.09000 * 110.77339 * 30.71191 * 13 12 2 30 30 H 1.09004 * 110.93469 * 267.35706 * 13 12 2 31 31 H 1.09000 * 109.47036 * 175.46902 * 16 14 13 32 32 H 1.09002 * 109.47462 * 55.46980 * 16 14 13 33 33 H 1.08998 * 109.46972 * 65.09825 * 17 16 14 34 34 H 1.09000 * 109.47173 * 305.09878 * 17 16 14 35 35 H 1.00903 * 110.99721 * 180.02562 * 18 17 16 36 36 H 1.00896 * 110.99923 * 303.94897 * 18 17 16 37 37 H 1.07995 * 119.96317 * 359.74686 * 20 19 14 38 38 H 1.08003 * 120.05771 * 179.97438 * 21 20 19 39 39 H 1.07991 * 119.87167 * 180.14540 * 22 21 20 40 40 H 1.07993 * 119.90347 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5854 -1.6330 -1.1334 6 6 1.7856 -0.1828 -2.4801 7 7 1.1115 0.9403 -2.5984 8 14 2.4087 -1.0631 -4.0053 9 1 3.1322 -2.2964 -3.6042 10 1 1.2588 -1.4244 -4.8729 11 1 3.3298 -0.1687 -4.7515 12 7 2.0196 -0.6925 1.1994 13 6 1.5973 -2.1100 1.2026 14 6 2.7547 -2.8057 1.9553 15 1 2.5342 -2.8783 3.0204 16 6 3.0297 -4.1904 1.3654 17 6 1.8119 -5.0899 1.5861 18 7 2.1201 -6.4519 1.1300 19 6 3.9247 -1.8746 1.7076 20 6 5.2844 -2.0554 1.8513 21 6 6.1565 -1.0260 1.5469 22 6 5.6629 0.1852 1.0976 23 6 4.3041 0.3716 0.9535 24 6 3.4183 -0.6597 1.2620 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.9383 1.3117 -3.4776 29 1 1.5137 -2.4908 0.1848 30 1 0.6567 -2.2349 1.7391 31 1 3.8987 -4.6284 1.8565 32 1 3.2244 -4.0980 0.2969 33 1 0.9653 -4.7003 1.0209 34 1 1.5623 -5.1097 2.6470 35 1 1.3306 -7.0656 1.2649 36 1 2.4170 -6.4518 0.1657 37 1 5.6686 -3.0018 2.2022 38 1 7.2212 -1.1678 1.6599 39 1 6.3443 0.9880 0.8578 40 1 3.9250 1.3197 0.6018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221001320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:40 Heat of formation + Delta-G solvation = 9.231258 kcal Electronic energy + Delta-G solvation = -20188.745380 eV Core-core repulsion = 17387.928190 eV Total energy + Delta-G solvation = -2800.817190 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70953 -37.90679 -36.98775 -35.10531 -33.59973 -31.62184 -30.59559 -29.29880 -27.43863 -27.09692 -24.16245 -23.51500 -22.21859 -21.58508 -20.86408 -18.49618 -17.50163 -16.99701 -16.61794 -16.57202 -16.17911 -15.96487 -15.28100 -15.11312 -14.74841 -14.57042 -14.06290 -13.60433 -13.54819 -13.31746 -13.14942 -12.98205 -12.80812 -12.73458 -12.47701 -12.28321 -12.14256 -11.95865 -11.83171 -11.57029 -11.40507 -11.37932 -10.56912 -10.38485 -9.61132 -9.55703 -8.50161 -8.07183 -6.31545 0.62615 0.70462 1.31587 1.35201 1.44636 2.35203 2.91459 3.10723 3.33571 3.57694 3.75987 3.83530 4.12563 4.29283 4.32358 4.44416 4.47280 4.52836 4.63119 4.69984 4.76145 4.82971 4.92294 4.95685 4.96477 5.05303 5.09308 5.20560 5.27184 5.37899 5.42829 5.54754 5.65922 5.72474 5.77650 5.89096 6.06322 6.10831 6.21545 6.33595 6.58813 6.60345 6.84503 7.37674 8.86724 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.008922 C = 0.007181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.027567 B = 3137.539317 C = 3897.993361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.210 3.790 3 H 0.010 0.990 4 C -0.533 4.533 5 H 0.048 0.952 6 C 0.024 3.976 7 N -0.913 5.913 8 Si 0.945 3.055 9 H -0.272 1.272 10 H -0.277 1.277 11 H -0.282 1.282 12 N -0.491 5.491 13 C 0.056 3.944 14 C -0.038 4.038 15 H 0.099 0.901 16 C -0.093 4.093 17 C 0.065 3.935 18 N -0.855 5.855 19 C -0.161 4.161 20 C -0.084 4.084 21 C -0.160 4.160 22 C -0.101 4.101 23 C -0.159 4.159 24 C 0.113 3.887 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.056 0.944 28 H 0.263 0.737 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.023 0.977 34 H 0.081 0.919 35 H 0.350 0.650 36 H 0.342 0.658 37 H 0.141 0.859 38 H 0.150 0.850 39 H 0.138 0.862 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 -9.592 7.818 13.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 H 0.028 0.972 4 C -0.572 4.572 5 H 0.066 0.934 6 C -0.176 4.176 7 N -0.553 5.553 8 Si 0.771 3.229 9 H -0.197 1.197 10 H -0.202 1.202 11 H -0.208 1.208 12 N -0.204 5.204 13 C -0.070 4.070 14 C -0.057 4.057 15 H 0.117 0.883 16 C -0.131 4.131 17 C -0.066 4.066 18 N -0.385 5.385 19 C -0.164 4.164 20 C -0.102 4.102 21 C -0.178 4.178 22 C -0.119 4.119 23 C -0.180 4.180 24 C 0.013 3.987 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.100 0.900 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.156 0.844 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.846 -9.183 8.665 13.524 hybrid contribution -0.592 0.207 -2.516 2.593 sum 4.255 -8.975 6.149 11.682 Atomic orbital electron populations 1.21601 0.96795 0.99590 0.99679 1.19232 0.92832 0.93046 0.84451 0.97241 1.21692 1.34805 1.08597 0.92109 0.93360 1.25552 0.95136 0.95469 1.01446 1.70022 1.40751 1.20220 1.24263 0.85706 0.78245 0.78823 0.80147 1.19652 1.20244 1.20806 1.60826 1.06541 1.14804 1.38234 1.23241 0.98368 0.85310 1.00031 1.20835 0.91040 0.93429 1.00364 0.88330 1.21414 0.99134 0.92666 0.99898 1.21746 0.95629 0.88348 1.00906 1.58766 1.42739 1.09594 1.27429 1.20741 0.95229 0.94642 1.05755 1.20606 0.90805 0.99787 0.99003 1.21199 1.00481 0.92962 1.03194 1.21063 0.93552 0.98714 0.98612 1.20545 0.93840 0.98553 1.05096 1.19828 0.89266 0.94647 0.94926 0.94302 0.95029 0.92554 0.92782 0.92708 0.89473 0.90183 0.94027 0.95868 0.90029 0.83659 0.84592 0.84127 0.83191 0.84383 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.96 71.98 0.65 -5.03 16 2 C 0.21 10.65 2.07 44.17 0.09 10.74 16 3 H 0.01 0.56 7.19 -2.39 -0.02 0.54 16 4 C -0.53 -28.67 6.81 25.60 0.17 -28.50 16 5 H 0.05 2.66 6.48 -2.91 -0.02 2.64 16 6 C 0.02 1.31 5.32 84.65 0.45 1.76 16 7 N -0.91 -52.00 11.69 21.45 0.25 -51.75 16 8 Si 0.94 43.60 29.54 68.60 2.03 45.62 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 N -0.49 -21.76 5.06 -668.99 -3.38 -25.14 16 13 C 0.06 2.13 4.00 86.65 0.35 2.47 16 14 C -0.04 -1.19 3.13 -10.72 -0.03 -1.22 16 15 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 16 C -0.09 -2.53 4.83 30.59 0.15 -2.38 16 17 C 0.06 1.49 6.53 86.30 0.56 2.06 16 18 N -0.86 -17.45 9.62 -186.72 -1.80 -19.25 16 19 C -0.16 -5.80 5.66 -19.49 -0.11 -5.91 16 20 C -0.08 -2.57 9.88 22.21 0.22 -2.35 16 21 C -0.16 -4.69 10.06 22.30 0.22 -4.47 16 22 C -0.10 -3.41 10.02 22.21 0.22 -3.19 16 23 C -0.16 -6.70 9.49 22.47 0.21 -6.49 16 24 C 0.11 4.83 5.04 38.28 0.19 5.03 16 25 H 0.04 1.73 7.26 -2.39 -0.02 1.71 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 27 H 0.06 2.96 6.47 -2.39 -0.02 2.94 16 28 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.05 2.32 5.76 -2.39 -0.01 2.31 16 30 H 0.09 2.96 8.13 -2.38 -0.02 2.94 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 33 H 0.02 0.58 7.60 -2.39 -0.02 0.56 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 35 H 0.35 5.70 9.08 -89.69 -0.81 4.89 16 36 H 0.34 6.85 8.99 -89.70 -0.81 6.04 16 37 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 39 H 0.14 3.86 8.06 -2.92 -0.02 3.84 16 40 H 0.09 4.22 7.31 -2.91 -0.02 4.20 16 Total: -1.00 -61.64 316.49 -0.14 -61.77 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.58 Total: 26.21 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 3.35 Total: -37.47 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -4.93 Total: -96.14 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -61.64 -0.14 -61.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221001320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.003 kcal (2) G-P(sol) polarization free energy of solvation -61.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds