Wall clock time and date at job start Mon Mar 30 2020 07:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.46896 * 2 1 4 4 N 1.29499 * 124.54631 * 90.02496 * 3 2 1 5 5 C 1.30752 * 117.63442 * 179.97438 * 4 3 2 6 6 Br 1.89105 * 123.24760 * 180.02562 * 5 4 3 7 7 C 1.38722 * 113.50608 * 359.97438 * 5 4 3 8 8 C 1.39985 * 126.25877 * 179.97438 * 7 5 4 9 9 H 1.07999 * 120.00026 * 0.02562 * 8 7 5 10 10 C 1.40059 * 119.99783 * 179.97438 * 8 7 5 11 11 N 1.30882 * 120.00210 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99642 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47488 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46997 * 120.00626 * 12 10 8 15 15 H 1.48501 * 109.46799 * 239.99882 * 12 10 8 16 16 S 1.70880 * 124.54267 * 270.28856 * 3 2 1 17 17 H 1.08996 * 109.47360 * 299.99624 * 1 2 3 18 18 H 1.09002 * 109.47207 * 60.00334 * 1 2 3 19 19 H 1.09008 * 109.46591 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47179 * 239.99853 * 2 1 3 21 21 H 1.09002 * 109.47207 * 119.99666 * 2 1 3 22 22 H 0.96991 * 120.00327 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2775 2.1130 1.0666 5 6 2.7105 3.3366 0.9093 6 35 3.1183 4.4860 2.3545 7 6 2.8430 3.7100 -0.4202 8 6 3.2824 4.9528 -0.8912 9 1 3.5568 5.7290 -0.1922 10 6 3.3671 5.1894 -2.2691 11 7 3.0350 4.2486 -3.1162 12 14 3.9528 6.8481 -2.8977 13 1 4.2641 7.7321 -1.7459 14 1 5.1735 6.6619 -3.7225 15 1 2.8866 7.4685 -3.7245 16 16 2.3485 2.3367 -1.4075 17 1 -0.3634 0.5137 0.8900 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0278 0.0005 20 1 1.8933 -0.5138 -0.8899 21 1 1.8934 -0.5138 0.8900 22 1 3.0933 4.4125 -4.0704 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222639684.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:21 Heat of formation + Delta-G solvation = -16.228099 kcal Electronic energy + Delta-G solvation = -10299.554744 eV Core-core repulsion = 8218.307943 eV Total energy + Delta-G solvation = -2081.246801 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.46360 -36.33223 -34.31019 -31.70512 -30.78536 -27.00824 -25.25782 -22.81042 -20.70078 -19.24413 -17.70443 -17.01692 -15.55427 -15.15821 -15.03226 -14.38116 -14.01628 -13.70708 -13.31978 -13.09132 -12.87152 -12.26913 -12.02156 -11.84534 -11.57652 -11.50566 -11.27750 -10.81139 -9.88451 -9.81216 -9.06426 -8.94412 -6.65119 0.56317 0.90902 1.36348 1.49390 1.55903 1.64637 2.03370 2.17354 2.21598 2.94350 4.10347 4.37827 4.61187 4.76067 4.85594 5.02506 5.05929 5.24472 5.41050 5.65233 5.87862 6.15131 6.35298 7.58939 7.88999 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.012536 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.173409 B = 2232.961940 C = 3656.767383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.015 4.015 3 C -0.164 4.164 4 N -0.439 5.439 5 C -0.175 4.175 6 Br -0.039 7.039 7 C -0.011 4.011 8 C -0.370 4.370 9 H 0.109 0.891 10 C 0.015 3.985 11 N -0.781 5.781 12 Si 1.009 2.991 13 H -0.253 1.253 14 H -0.256 1.256 15 H -0.256 1.256 16 S 0.134 5.866 17 H 0.035 0.965 18 H 0.047 0.953 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.066 0.934 22 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 1.013 -0.640 1.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.056 4.056 3 C -0.438 4.438 4 N -0.152 5.152 5 C -0.384 4.384 6 Br 0.042 6.958 7 C -0.137 4.137 8 C -0.407 4.407 9 H 0.127 0.873 10 C -0.206 4.206 11 N -0.406 5.406 12 Si 0.827 3.173 13 H -0.176 1.176 14 H -0.180 1.180 15 H -0.180 1.180 16 S 0.385 5.615 17 H 0.055 0.945 18 H 0.066 0.934 19 H 0.102 0.898 20 H 0.097 0.903 21 H 0.085 0.915 22 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.247 0.751 -0.829 1.145 hybrid contribution 0.325 0.833 0.435 0.994 sum 0.078 1.584 -0.393 1.634 Atomic orbital electron populations 1.21668 0.94360 1.02163 1.00880 1.19729 0.96122 0.87761 1.01997 1.26629 1.19917 1.03649 0.93604 1.64899 1.10450 1.05387 1.34509 1.21136 1.32154 0.95410 0.89664 1.96147 1.94235 1.61445 1.43958 1.23303 0.98170 0.98854 0.93370 1.19754 1.30566 0.96582 0.93762 0.87333 1.27275 0.93150 1.04254 0.95947 1.68986 1.30228 1.34949 1.06440 0.84686 0.79103 0.74376 0.79127 1.17589 1.17988 1.17987 1.83827 1.65736 1.03854 1.08126 0.94546 0.93413 0.89829 0.90298 0.91524 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 9.89 71.98 0.71 -3.60 14 2 C -0.02 -0.58 6.50 29.85 0.19 -0.38 14 3 C -0.16 -7.88 6.61 88.45 0.58 -7.29 14 4 N -0.44 -23.32 10.49 -183.15 -1.92 -25.24 14 5 C -0.18 -9.33 7.36 84.97 0.63 -8.70 14 6 Br -0.04 -1.76 33.19 -20.37 -0.68 -2.44 14 7 C -0.01 -0.60 6.25 22.81 0.14 -0.46 14 8 C -0.37 -18.27 9.03 23.14 0.21 -18.06 14 9 H 0.11 5.18 7.29 -2.91 -0.02 5.16 14 10 C 0.02 0.67 5.50 85.28 0.47 1.13 14 11 N -0.78 -34.90 10.76 21.86 0.24 -34.67 14 12 Si 1.01 32.68 29.56 68.60 2.03 34.71 14 13 H -0.25 -8.14 7.11 99.48 0.71 -7.43 14 14 H -0.26 -7.84 7.11 99.48 0.71 -7.13 14 15 H -0.26 -7.84 7.11 99.48 0.71 -7.13 14 16 S 0.13 6.57 20.23 -56.49 -1.14 5.43 14 17 H 0.04 1.28 8.14 -2.39 -0.02 1.26 14 18 H 0.05 1.57 8.14 -2.39 -0.02 1.55 14 19 H 0.08 2.09 8.14 -2.38 -0.02 2.07 14 20 H 0.08 2.63 8.14 -2.39 -0.02 2.61 14 21 H 0.07 2.43 8.14 -2.39 -0.02 2.41 14 22 H 0.31 12.21 8.30 -92.71 -0.77 11.44 14 Total: -1.00 -57.45 232.98 2.69 -54.75 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.23 Total: 4.82 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 2.94 Total: -37.36 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -1.69 Total: -59.91 kcal Atomic # 14 Polarization: 32.68 SS G_CDS: 2.03 Total: 34.71 kcal Atomic # 16 Polarization: 6.57 SS G_CDS: -1.14 Total: 5.43 kcal Atomic # 35 Polarization: -1.76 SS G_CDS: -0.68 Total: -2.44 kcal Total: -57.45 2.69 -54.75 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222639684.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.525 kcal (2) G-P(sol) polarization free energy of solvation -57.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds