Wall clock time and date at job start Mon Mar 30 2020 06:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46708 * 2 1 4 4 C 1.50694 * 109.46882 * 239.99860 * 2 1 3 5 5 H 1.07996 * 119.99987 * 239.99780 * 4 2 1 6 6 C 1.37879 * 120.00014 * 60.00183 * 4 2 1 7 7 N 1.31508 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99814 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47264 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46871 * 119.99944 * 8 6 4 11 11 H 1.48501 * 109.46870 * 239.99845 * 8 6 4 12 12 N 1.46900 * 109.46855 * 119.99588 * 2 1 3 13 13 C 1.46904 * 110.99492 * 178.30058 * 12 2 1 14 14 C 1.46893 * 111.00629 * 302.25529 * 12 2 1 15 15 H 1.08998 * 110.26596 * 55.21314 * 14 12 2 16 16 C 1.54346 * 110.38643 * 293.09124 * 14 12 2 17 17 C 1.54341 * 102.39415 * 214.69147 * 16 14 12 18 18 H 1.09007 * 110.30090 * 145.26437 * 17 16 14 19 19 N 1.46901 * 110.30226 * 267.31646 * 17 16 14 20 20 C 1.51368 * 105.17069 * 26.34076 * 17 16 14 21 21 C 1.38493 * 130.38887 * 162.83808 * 20 17 16 22 22 C 1.38107 * 120.21219 * 179.97438 * 21 20 17 23 23 C 1.38253 * 119.93857 * 359.97438 * 22 21 20 24 24 C 1.38106 * 119.92988 * 359.76661 * 23 22 21 25 25 C 1.38210 * 109.75950 * 342.81388 * 20 17 16 26 26 H 1.09002 * 109.47263 * 65.85275 * 1 2 3 27 27 H 1.08997 * 109.47448 * 185.85725 * 1 2 3 28 28 H 1.08999 * 109.47285 * 305.85510 * 1 2 3 29 29 H 0.97001 * 120.00149 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46885 * 177.44621 * 13 12 2 31 31 H 1.09003 * 109.47224 * 297.44347 * 13 12 2 32 32 H 1.08999 * 109.47232 * 57.44416 * 13 12 2 33 33 H 1.09006 * 110.82239 * 332.91532 * 16 14 12 34 34 H 1.09003 * 110.82585 * 96.26282 * 16 14 12 35 35 H 1.00900 * 110.99924 * 179.97438 * 19 17 16 36 36 H 1.00899 * 111.00184 * 303.95683 * 19 17 16 37 37 H 1.08003 * 119.89383 * 359.96194 * 21 20 17 38 38 H 1.08006 * 120.02916 * 180.02562 * 22 21 20 39 39 H 1.07991 * 120.03348 * 179.97438 * 23 22 21 40 40 H 1.07998 * 119.89039 * 180.30520 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 3.1472 -2.2864 -3.6038 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1859 -4.8161 12 7 2.0196 -0.6924 1.1995 13 6 3.4876 -0.7473 1.2132 14 6 1.5051 -0.0582 2.4205 15 1 0.4166 -0.0104 2.3912 16 6 2.0990 1.3572 2.5824 17 6 2.2423 1.4831 4.1140 18 1 3.1290 2.0658 4.3643 19 7 1.0436 2.1084 4.6884 20 6 2.3883 0.0626 4.6163 21 6 2.8545 -0.4169 5.8290 22 6 2.8972 -1.7764 6.0686 23 6 2.4730 -2.6622 5.0956 24 6 2.0028 -2.1856 3.8877 25 6 1.9647 -0.8229 3.6433 26 1 -0.3634 0.4204 -0.9377 27 1 -0.3634 -1.0223 0.1049 28 1 -0.3634 0.6019 0.8329 29 1 0.7087 1.1612 -3.4844 30 1 3.8247 -1.2246 2.1334 31 1 3.8377 -1.3226 0.3561 32 1 3.8895 0.2645 1.1604 33 1 3.0716 1.4274 2.0952 34 1 1.4162 2.1111 2.1908 35 1 1.1260 2.1955 5.6902 36 1 0.8629 3.0043 4.2608 37 1 3.1858 0.2744 6.5897 38 1 3.2609 -2.1471 7.0156 39 1 2.5062 -3.7255 5.2812 40 1 1.6670 -2.8779 3.1299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227546799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:46 Heat of formation + Delta-G solvation = 40.753925 kcal Electronic energy + Delta-G solvation = -20093.624229 eV Core-core repulsion = 17294.173965 eV Total energy + Delta-G solvation = -2799.450265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.24812 -37.07740 -35.34498 -32.98236 -31.18209 -30.33293 -28.97177 -28.29673 -26.18808 -24.60519 -23.45429 -22.42988 -20.80707 -20.28693 -18.61128 -16.37968 -16.22581 -15.68808 -15.51714 -15.00282 -14.70330 -14.36727 -14.01172 -13.47664 -13.17657 -12.98324 -12.77189 -12.42748 -12.26713 -11.58775 -11.38706 -11.22476 -11.06768 -11.02568 -10.80064 -10.77483 -10.54828 -10.30950 -10.05271 -10.01188 -9.72281 -8.90066 -8.77106 -8.52139 -8.39080 -8.21443 -7.10090 -5.98829 -4.03244 1.59124 1.67917 3.30716 3.38756 3.43266 3.99261 4.42854 4.57437 4.80101 4.83553 5.08787 5.18759 5.25172 5.33771 5.36195 5.51022 5.70622 5.81708 5.90473 6.04552 6.13248 6.22134 6.25765 6.39093 6.44846 6.65975 6.66960 6.76411 6.83199 6.91335 6.99811 7.10114 7.17162 7.20365 7.26318 7.47024 7.54944 7.77320 7.85759 8.26033 8.36739 8.63538 9.04063 9.61790 11.07502 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.005743 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.126731 B = 4874.154376 C = 5420.118755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.526 5.526 13 C 0.036 3.964 14 C 0.124 3.876 15 H 0.099 0.901 16 C -0.148 4.148 17 C 0.134 3.866 18 H 0.037 0.963 19 N -0.835 5.835 20 C -0.097 4.097 21 C -0.108 4.108 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.093 4.093 25 C -0.051 4.051 26 H 0.087 0.913 27 H 0.032 0.968 28 H 0.008 0.992 29 H 0.259 0.741 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.014 0.986 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.337 0.663 36 H 0.343 0.657 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -0.098 15.064 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.107 3.893 3 H 0.019 0.981 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.249 5.249 13 C -0.112 4.112 14 C 0.015 3.985 15 H 0.117 0.883 16 C -0.187 4.187 17 C 0.023 3.977 18 H 0.055 0.945 19 N -0.366 5.366 20 C -0.098 4.098 21 C -0.127 4.127 22 C -0.150 4.150 23 C -0.141 4.141 24 C -0.111 4.111 25 C -0.052 4.052 26 H 0.105 0.895 27 H 0.052 0.948 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.033 0.967 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.331 -1.098 14.568 14.794 hybrid contribution 1.245 1.208 -0.470 1.797 sum 3.576 0.110 14.098 14.545 Atomic orbital electron populations 1.21859 0.97841 0.98792 1.00889 1.19247 0.92235 0.92119 0.85713 0.98126 1.21202 1.30701 1.12188 0.89757 0.91908 1.24923 0.95282 0.95112 0.98973 1.69895 1.37060 1.23133 1.23218 0.86491 0.78586 0.79620 0.83007 1.19779 1.21069 1.21227 1.62331 1.07966 1.52959 1.01661 1.22223 0.89132 0.99021 1.00818 1.21218 1.00191 0.88860 0.88193 0.88282 1.23024 1.02510 1.00097 0.93112 1.20669 0.90826 0.91216 0.95025 0.94521 1.58635 1.39536 1.29509 1.08942 1.20408 0.99649 0.95263 0.94460 1.20480 1.00981 0.95320 0.95906 1.20895 1.01878 0.93048 0.99191 1.21038 0.99913 0.99310 0.93801 1.20740 0.98884 0.94775 0.96684 1.20622 0.95730 0.93188 0.95706 0.89451 0.94841 0.97259 0.93105 0.93751 0.90934 0.96717 0.90189 0.90392 0.85041 0.84344 0.87194 0.86549 0.86333 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.56 37.16 0.32 -3.01 16 2 C 0.21 5.30 1.83 -68.87 -0.13 5.17 16 3 H 0.00 0.03 7.43 -51.93 -0.39 -0.35 16 4 C -0.50 -13.59 7.96 -34.44 -0.27 -13.87 16 5 H 0.06 1.72 6.55 -52.49 -0.34 1.37 16 6 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 7 N -0.89 -25.34 11.29 55.43 0.63 -24.72 16 8 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.53 -11.28 4.62 -228.44 -1.05 -12.34 16 13 C 0.04 0.73 8.56 60.07 0.51 1.25 16 14 C 0.12 2.34 2.63 -67.84 -0.18 2.16 16 15 H 0.10 2.01 6.19 -51.93 -0.32 1.69 16 16 C -0.15 -2.52 5.17 -25.32 -0.13 -2.65 16 17 C 0.13 1.90 3.99 -67.83 -0.27 1.63 16 18 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 19 N -0.84 -10.37 9.28 -4.77 -0.04 -10.41 16 20 C -0.10 -1.46 5.77 -104.21 -0.60 -2.07 16 21 C -0.11 -1.43 10.04 -39.54 -0.40 -1.82 16 22 C -0.13 -1.65 10.05 -39.62 -0.40 -2.04 16 23 C -0.12 -1.63 10.05 -39.62 -0.40 -2.03 16 24 C -0.09 -1.47 9.64 -39.53 -0.38 -1.85 16 25 C -0.05 -0.87 4.31 -104.21 -0.45 -1.32 16 26 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.01 0.19 6.61 -51.93 -0.34 -0.15 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.04 0.82 6.59 -51.93 -0.34 0.47 16 31 H 0.07 1.54 6.45 -51.93 -0.34 1.21 16 32 H 0.01 0.29 6.16 -51.93 -0.32 -0.03 16 33 H 0.08 1.44 5.68 -51.93 -0.30 1.14 16 34 H 0.08 1.35 7.98 -51.93 -0.41 0.94 16 35 H 0.34 3.50 9.07 -39.29 -0.36 3.15 16 36 H 0.34 3.75 8.91 -39.29 -0.35 3.40 16 37 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -28.79 310.29 -9.47 -38.26 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.79 Total: 7.19 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -2.87 Total: -18.95 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.47 Total: -47.47 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.79 -9.47 -38.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227546799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.016 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds