Wall clock time and date at job start Mon Mar 30 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46708 * 2 1 4 4 C 1.50694 * 109.46882 * 239.99860 * 2 1 3 5 5 H 1.07996 * 119.99987 * 239.99780 * 4 2 1 6 6 C 1.37879 * 120.00014 * 60.00183 * 4 2 1 7 7 N 1.31508 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99814 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47264 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46871 * 119.99944 * 8 6 4 11 11 H 1.48501 * 109.46870 * 239.99845 * 8 6 4 12 12 N 1.46900 * 109.46855 * 119.99588 * 2 1 3 13 13 C 1.46904 * 110.99492 * 178.30058 * 12 2 1 14 14 C 1.46893 * 111.00629 * 302.25529 * 12 2 1 15 15 H 1.08998 * 110.26596 * 55.21314 * 14 12 2 16 16 C 1.54346 * 110.38643 * 293.09124 * 14 12 2 17 17 C 1.54341 * 102.39415 * 214.69147 * 16 14 12 18 18 H 1.09007 * 110.30090 * 145.26437 * 17 16 14 19 19 N 1.46901 * 110.30226 * 267.31646 * 17 16 14 20 20 C 1.51368 * 105.17069 * 26.34076 * 17 16 14 21 21 C 1.38493 * 130.38887 * 162.83808 * 20 17 16 22 22 C 1.38107 * 120.21219 * 179.97438 * 21 20 17 23 23 C 1.38253 * 119.93857 * 359.97438 * 22 21 20 24 24 C 1.38106 * 119.92988 * 359.76661 * 23 22 21 25 25 C 1.38210 * 109.75950 * 342.81388 * 20 17 16 26 26 H 1.09002 * 109.47263 * 65.85275 * 1 2 3 27 27 H 1.08997 * 109.47448 * 185.85725 * 1 2 3 28 28 H 1.08999 * 109.47285 * 305.85510 * 1 2 3 29 29 H 0.97001 * 120.00149 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46885 * 177.44621 * 13 12 2 31 31 H 1.09003 * 109.47224 * 297.44347 * 13 12 2 32 32 H 1.08999 * 109.47232 * 57.44416 * 13 12 2 33 33 H 1.09006 * 110.82239 * 332.91532 * 16 14 12 34 34 H 1.09003 * 110.82585 * 96.26282 * 16 14 12 35 35 H 1.00900 * 110.99924 * 179.97438 * 19 17 16 36 36 H 1.00899 * 111.00184 * 303.95683 * 19 17 16 37 37 H 1.08003 * 119.89383 * 359.96194 * 21 20 17 38 38 H 1.08006 * 120.02916 * 180.02562 * 22 21 20 39 39 H 1.07991 * 120.03348 * 179.97438 * 23 22 21 40 40 H 1.07998 * 119.89039 * 180.30520 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 3.1472 -2.2864 -3.6038 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1859 -4.8161 12 7 2.0196 -0.6924 1.1995 13 6 3.4876 -0.7473 1.2132 14 6 1.5051 -0.0582 2.4205 15 1 0.4166 -0.0104 2.3912 16 6 2.0990 1.3572 2.5824 17 6 2.2423 1.4831 4.1140 18 1 3.1290 2.0658 4.3643 19 7 1.0436 2.1084 4.6884 20 6 2.3883 0.0626 4.6163 21 6 2.8545 -0.4169 5.8290 22 6 2.8972 -1.7764 6.0686 23 6 2.4730 -2.6622 5.0956 24 6 2.0028 -2.1856 3.8877 25 6 1.9647 -0.8229 3.6433 26 1 -0.3634 0.4204 -0.9377 27 1 -0.3634 -1.0223 0.1049 28 1 -0.3634 0.6019 0.8329 29 1 0.7087 1.1612 -3.4844 30 1 3.8247 -1.2246 2.1334 31 1 3.8377 -1.3226 0.3561 32 1 3.8895 0.2645 1.1604 33 1 3.0716 1.4274 2.0952 34 1 1.4162 2.1111 2.1908 35 1 1.1260 2.1955 5.6902 36 1 0.8629 3.0043 4.2608 37 1 3.1858 0.2744 6.5897 38 1 3.2609 -2.1471 7.0156 39 1 2.5062 -3.7255 5.2812 40 1 1.6670 -2.8779 3.1299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227546799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:45 Heat of formation + Delta-G solvation = 21.854410 kcal Electronic energy + Delta-G solvation = -20094.443774 eV Core-core repulsion = 17294.173965 eV Total energy + Delta-G solvation = -2800.269809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.50599 -38.55869 -36.64574 -34.83854 -32.61906 -31.40013 -30.83954 -29.56669 -27.83520 -26.44793 -25.02833 -23.60261 -22.42723 -21.39788 -20.20227 -18.34672 -17.59147 -17.02136 -16.85436 -16.40052 -16.00422 -15.66552 -15.51095 -15.03440 -14.82806 -14.35916 -14.09519 -13.97825 -13.53061 -13.26483 -12.97947 -12.84632 -12.71650 -12.63964 -12.42085 -12.29576 -12.06661 -11.99520 -11.88143 -11.81258 -11.34224 -10.91000 -10.50045 -9.79548 -9.59255 -9.36618 -8.84618 -8.09782 -6.21539 0.50526 0.57657 1.40864 1.43048 1.54624 2.42924 2.90179 3.17662 3.33597 3.54340 3.59761 3.80631 4.08245 4.18726 4.26010 4.32104 4.43091 4.57224 4.61317 4.65882 4.75107 4.81680 4.89124 4.95896 5.02659 5.06102 5.12515 5.19890 5.28308 5.31088 5.50072 5.61531 5.68609 5.74923 5.76228 5.90818 6.16281 6.22228 6.28952 6.43755 6.61648 6.76527 6.93919 7.47631 8.95834 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.005743 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.126731 B = 4874.154376 C = 5420.118755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.221 3.779 3 H -0.029 1.029 4 C -0.516 4.516 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.533 5.533 13 C 0.047 3.953 14 C 0.125 3.875 15 H 0.076 0.924 16 C -0.145 4.145 17 C 0.144 3.856 18 H 0.053 0.947 19 N -0.841 5.841 20 C -0.103 4.103 21 C -0.107 4.107 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.080 4.080 26 H 0.063 0.937 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.261 0.739 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.011 0.989 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.352 0.648 36 H 0.351 0.649 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.056 -0.741 17.327 17.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.114 3.886 3 H -0.012 1.012 4 C -0.555 4.555 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.255 5.255 13 C -0.101 4.101 14 C 0.017 3.983 15 H 0.094 0.906 16 C -0.185 4.185 17 C 0.033 3.967 18 H 0.071 0.929 19 N -0.374 5.374 20 C -0.104 4.104 21 C -0.125 4.125 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.081 4.081 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.408 -1.738 16.858 17.287 hybrid contribution 0.897 1.391 -1.077 1.975 sum 4.305 -0.347 15.781 16.361 Atomic orbital electron populations 1.21664 0.97793 0.98453 1.00113 1.18990 0.92179 0.90529 0.86889 1.01168 1.21456 1.30838 1.12168 0.91005 0.92526 1.25682 0.95422 0.95784 1.01792 1.70016 1.37826 1.24239 1.23911 0.85497 0.78098 0.78604 0.79362 1.19306 1.20661 1.20680 1.62219 1.08730 1.52967 1.01625 1.22109 0.88344 0.98704 1.00966 1.21132 0.98861 0.90359 0.87977 0.90604 1.22900 1.01178 0.98625 0.95753 1.20486 0.92090 0.91593 0.92579 0.92897 1.58548 1.38717 1.30106 1.10067 1.20548 0.99897 0.94983 0.94998 1.20847 0.99796 0.96381 0.95504 1.21346 1.00014 0.92574 1.00091 1.21337 0.98786 1.00984 0.92778 1.20793 1.00196 0.94177 0.97827 1.20480 0.98224 0.94036 0.95337 0.91871 0.95259 0.95780 0.92982 0.91873 0.92525 0.97022 0.91506 0.91544 0.83354 0.83475 0.84218 0.82948 0.83836 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.23 8.56 71.98 0.62 -5.61 16 2 C 0.22 11.46 1.83 44.17 0.08 11.54 16 3 H -0.03 -1.66 7.43 -2.38 -0.02 -1.68 16 4 C -0.52 -28.87 7.96 25.60 0.20 -28.67 16 5 H 0.06 3.17 6.55 -2.91 -0.02 3.15 16 6 C 0.01 0.65 5.29 84.66 0.45 1.09 16 7 N -0.92 -53.43 11.29 21.45 0.24 -53.19 16 8 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 N -0.53 -23.62 4.62 -876.64 -4.05 -27.66 16 13 C 0.05 1.93 8.56 127.69 1.09 3.03 16 14 C 0.13 4.83 2.63 44.84 0.12 4.95 16 15 H 0.08 3.21 6.19 -2.39 -0.01 3.20 16 16 C -0.15 -5.03 5.17 31.51 0.16 -4.87 16 17 C 0.14 3.89 3.99 44.84 0.18 4.07 16 18 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 19 N -0.84 -19.51 9.28 -169.00 -1.57 -21.08 16 20 C -0.10 -2.91 5.77 -19.60 -0.11 -3.03 16 21 C -0.11 -2.40 10.04 22.30 0.22 -2.17 16 22 C -0.12 -2.52 10.05 22.24 0.22 -2.29 16 23 C -0.12 -2.87 10.05 22.24 0.22 -2.65 16 24 C -0.11 -3.45 9.64 22.30 0.22 -3.23 16 25 C -0.08 -2.66 4.31 -19.60 -0.08 -2.75 16 26 H 0.06 3.53 5.93 -2.39 -0.01 3.51 16 27 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.02 1.10 6.61 -2.39 -0.02 1.09 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.06 2.33 6.59 -2.39 -0.02 2.31 16 31 H 0.06 2.47 6.45 -2.39 -0.02 2.45 16 32 H 0.01 0.47 6.16 -2.39 -0.01 0.46 16 33 H 0.07 2.47 5.68 -2.38 -0.01 2.46 16 34 H 0.07 2.40 7.98 -2.39 -0.02 2.38 16 35 H 0.35 6.39 9.07 -89.69 -0.81 5.58 16 36 H 0.35 7.25 8.91 -89.69 -0.80 6.45 16 37 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 40 H 0.11 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -63.09 310.29 -0.31 -63.41 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -0.56 Total: 22.83 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 3.59 Total: -30.58 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -5.37 Total: -101.93 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -63.09 -0.31 -63.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227546799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.260 kcal (2) G-P(sol) polarization free energy of solvation -63.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds