Wall clock time and date at job start Mon Mar 30 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46995 * 2 1 4 4 C 1.50702 * 109.47251 * 240.00347 * 2 1 3 5 5 H 1.07995 * 119.99682 * 240.00163 * 4 2 1 6 6 C 1.37874 * 120.00110 * 59.99427 * 4 2 1 7 7 N 1.31522 * 119.99879 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47181 * 60.00242 * 8 6 4 10 10 H 1.48507 * 109.47121 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47020 * 300.00338 * 8 6 4 12 12 N 1.46898 * 109.47444 * 120.00105 * 2 1 3 13 13 C 1.47045 * 110.99841 * 316.62254 * 12 2 1 14 14 C 1.52814 * 107.94103 * 141.33863 * 13 12 2 15 15 H 1.09000 * 109.39063 * 153.15338 * 14 13 12 16 16 C 1.53006 * 109.42724 * 273.02764 * 14 13 12 17 17 N 1.46725 * 109.71023 * 33.09946 * 14 13 12 18 18 C 1.46705 * 109.80121 * 60.60941 * 17 14 13 19 19 C 1.50769 * 111.23055 * 269.55454 * 18 17 14 20 20 C 1.38781 * 117.77591 * 209.01371 * 19 18 17 21 21 C 1.38013 * 120.51718 * 181.16601 * 20 19 18 22 22 C 1.38316 * 119.94281 * 0.15575 * 21 20 19 23 23 C 1.37828 * 119.87833 * 359.40595 * 22 21 20 24 24 C 1.38153 * 122.54374 * 29.24028 * 19 18 17 25 25 H 1.09003 * 109.47647 * 71.55695 * 1 2 3 26 26 H 1.09000 * 109.47236 * 191.55892 * 1 2 3 27 27 H 1.09002 * 109.47641 * 311.55910 * 1 2 3 28 28 H 0.97000 * 119.99941 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.76685 * 21.72362 * 13 12 2 30 30 H 1.09001 * 109.76584 * 260.94791 * 13 12 2 31 31 H 1.08999 * 109.46624 * 180.24284 * 16 14 13 32 32 H 1.08996 * 109.47149 * 300.24518 * 16 14 13 33 33 H 1.08998 * 109.46913 * 60.24704 * 16 14 13 34 34 H 1.00898 * 111.00564 * 297.49926 * 17 14 13 35 35 H 1.09000 * 109.12706 * 30.00442 * 18 17 14 36 36 H 1.08998 * 109.12707 * 149.09954 * 18 17 14 37 37 H 1.07995 * 119.74144 * 1.16721 * 20 19 18 38 38 H 1.07998 * 120.02640 * 180.17086 * 21 20 19 39 39 H 1.08001 * 120.06171 * 179.38785 * 22 21 20 40 40 H 1.08000 * 119.82003 * 179.91398 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9433 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4197 -5.2205 11 1 3.8063 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 1.2546 -0.2907 2.3891 14 6 1.0537 -1.5301 3.2603 15 1 0.9398 -1.2264 4.3009 16 6 -0.2045 -2.2728 2.8061 17 7 2.2160 -2.4167 3.1349 18 6 3.4251 -1.7176 3.5837 19 6 4.0964 -0.9992 2.4407 20 6 5.4721 -0.8271 2.5038 21 6 6.1411 -0.1565 1.5001 22 6 5.4388 0.3525 0.4226 23 6 4.0737 0.1777 0.3484 24 6 3.3951 -0.5120 1.3547 25 1 -0.3634 0.3251 -0.9749 26 1 -0.3634 -1.0068 0.2059 27 1 -0.3634 0.6817 0.7690 28 1 0.7093 1.1619 -3.4843 29 1 0.2864 0.1087 2.0873 30 1 1.8086 0.4652 2.9457 31 1 -0.3508 -3.1546 3.4299 32 1 -1.0684 -1.6146 2.8989 33 1 -0.0906 -2.5783 1.7661 34 1 2.3194 -2.7456 2.1866 35 1 3.1544 -0.9928 4.3514 36 1 4.1202 -2.4424 4.0075 37 1 6.0233 -1.2209 3.3448 38 1 7.2122 -0.0295 1.5558 39 1 5.9592 0.8862 -0.3590 40 1 3.5261 0.5767 -0.4926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230229384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:57 Heat of formation + Delta-G solvation = 52.510841 kcal Electronic energy + Delta-G solvation = -20750.195907 eV Core-core repulsion = 17951.255461 eV Total energy + Delta-G solvation = -2798.940447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16510 -36.92382 -35.81321 -32.72722 -31.99661 -30.01014 -29.26671 -27.75737 -25.95293 -24.77469 -24.03503 -22.20108 -20.61743 -20.02114 -18.97530 -16.79194 -16.19676 -15.64686 -15.34565 -14.87033 -14.52959 -13.96573 -13.69414 -13.48464 -13.15630 -13.01373 -12.65142 -12.43823 -12.06177 -11.70259 -11.42282 -11.14302 -11.10093 -10.98606 -10.80194 -10.73583 -10.70644 -10.43013 -10.22553 -10.14623 -9.71182 -9.26015 -8.82079 -8.47692 -8.26364 -7.91901 -6.87001 -6.14647 -4.18711 2.01372 2.12806 3.26605 3.30792 3.34996 4.26860 4.40069 4.57569 4.95766 5.15973 5.25658 5.33936 5.45389 5.53736 5.65479 5.74276 5.80603 5.90594 5.99703 6.10051 6.11728 6.19803 6.34806 6.37406 6.47299 6.57889 6.59316 6.69769 6.84883 6.85854 7.01342 7.09273 7.25097 7.35893 7.45822 7.54358 7.69395 7.73370 7.90606 8.14103 8.20827 8.36245 8.86396 9.44076 10.90074 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.009420 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.003985 B = 2971.556006 C = 4058.323629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.210 3.790 3 H 0.015 0.985 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.489 5.489 13 C 0.011 3.989 14 C 0.085 3.915 15 H 0.070 0.930 16 C -0.140 4.140 17 N -0.669 5.669 18 C 0.106 3.894 19 C -0.163 4.163 20 C -0.107 4.107 21 C -0.162 4.162 22 C -0.112 4.112 23 C -0.145 4.145 24 C 0.142 3.858 25 H 0.094 0.906 26 H 0.037 0.963 27 H 0.014 0.986 28 H 0.263 0.737 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.358 0.642 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 -1.548 9.371 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.106 3.894 3 H 0.032 0.968 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.202 5.202 13 C -0.117 4.117 14 C -0.026 4.026 15 H 0.088 0.912 16 C -0.197 4.197 17 N -0.299 5.299 18 C -0.024 4.024 19 C -0.168 4.168 20 C -0.127 4.127 21 C -0.181 4.181 22 C -0.131 4.131 23 C -0.165 4.165 24 C 0.042 3.958 25 H 0.113 0.887 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.179 0.821 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.331 -2.271 9.765 10.293 hybrid contribution 0.753 0.966 -1.644 2.050 sum 3.084 -1.306 8.121 8.784 Atomic orbital electron populations 1.22050 0.97437 0.98358 1.02213 1.19517 0.92271 0.92499 0.85145 0.96787 1.21032 1.30752 1.12642 0.89306 0.91874 1.24899 0.95099 0.95114 0.99002 1.69868 1.36394 1.22740 1.23899 0.86563 0.79306 0.79832 0.81868 1.20139 1.21316 1.20137 1.58605 1.00231 1.56454 1.04950 1.23216 0.99864 0.97191 0.91386 1.21662 0.91747 0.91668 0.97527 0.91169 1.21776 0.95762 0.99823 1.02355 1.61319 1.01744 1.35590 1.31264 1.20790 0.91785 0.95546 0.94251 1.20184 0.94249 1.04446 0.97875 1.20744 0.93255 1.00087 0.98573 1.20825 0.98867 1.02478 0.95924 1.20989 0.94615 0.99950 0.97565 1.22399 0.94784 0.98412 1.00950 1.18712 0.89848 0.93742 0.93545 0.88724 0.94354 0.96771 0.92663 0.88729 0.94478 0.92779 0.92842 0.91574 0.82092 0.91873 0.90849 0.87189 0.87450 0.87102 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.05 37.15 0.30 -2.90 16 2 C 0.21 4.92 1.71 -68.87 -0.12 4.80 16 3 H 0.01 0.38 6.73 -51.93 -0.35 0.03 16 4 C -0.50 -12.80 5.98 -34.44 -0.21 -13.01 16 5 H 0.06 1.70 7.66 -52.49 -0.40 1.29 16 6 C 0.06 1.58 5.25 -17.82 -0.09 1.49 16 7 N -0.89 -23.86 11.31 55.43 0.63 -23.23 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.49 -9.98 3.12 -164.93 -0.51 -10.50 16 13 C 0.01 0.19 4.68 -3.84 -0.02 0.17 16 14 C 0.09 1.31 2.94 -67.90 -0.20 1.11 16 15 H 0.07 0.99 7.98 -51.93 -0.41 0.57 16 16 C -0.14 -2.04 9.31 37.16 0.35 -1.69 16 17 N -0.67 -10.85 6.55 -108.32 -0.71 -11.56 16 18 C 0.11 1.64 5.90 -5.05 -0.03 1.61 16 19 C -0.16 -2.90 5.47 -104.42 -0.57 -3.47 16 20 C -0.11 -1.75 9.56 -39.46 -0.38 -2.13 16 21 C -0.16 -2.68 10.04 -39.64 -0.40 -3.08 16 22 C -0.11 -2.09 10.04 -39.70 -0.40 -2.49 16 23 C -0.15 -3.10 7.89 -39.22 -0.31 -3.41 16 24 C 0.14 2.88 5.12 -83.85 -0.43 2.45 16 25 H 0.09 2.37 5.85 -51.93 -0.30 2.07 16 26 H 0.04 0.82 7.50 -51.93 -0.39 0.43 16 27 H 0.01 0.28 6.35 -51.93 -0.33 -0.05 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.09 1.68 4.50 -51.93 -0.23 1.44 16 30 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.07 1.10 7.51 -51.93 -0.39 0.72 16 34 H 0.36 6.61 7.29 -39.29 -0.29 6.33 16 35 H 0.06 0.93 7.61 -51.93 -0.40 0.53 16 36 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 37 H 0.11 1.49 8.03 -52.49 -0.42 1.07 16 38 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.17 3.96 4.45 -52.49 -0.23 3.73 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -25.79 301.59 -9.36 -35.16 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.79 Total: 10.41 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.50 Total: -20.53 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.60 Total: -45.29 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -25.79 -9.36 -35.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230229384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.667 kcal (2) G-P(sol) polarization free energy of solvation -25.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds