Wall clock time and date at job start Mon Mar 30 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46995 * 2 1 4 4 C 1.50702 * 109.47251 * 240.00347 * 2 1 3 5 5 H 1.07995 * 119.99682 * 240.00163 * 4 2 1 6 6 C 1.37874 * 120.00110 * 59.99427 * 4 2 1 7 7 N 1.31522 * 119.99879 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47181 * 60.00242 * 8 6 4 10 10 H 1.48507 * 109.47121 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47020 * 300.00338 * 8 6 4 12 12 N 1.46898 * 109.47444 * 120.00105 * 2 1 3 13 13 C 1.47045 * 110.99841 * 316.62254 * 12 2 1 14 14 C 1.52814 * 107.94103 * 141.33863 * 13 12 2 15 15 H 1.09000 * 109.39063 * 153.15338 * 14 13 12 16 16 C 1.53006 * 109.42724 * 273.02764 * 14 13 12 17 17 N 1.46725 * 109.71023 * 33.09946 * 14 13 12 18 18 C 1.46705 * 109.80121 * 60.60941 * 17 14 13 19 19 C 1.50769 * 111.23055 * 269.55454 * 18 17 14 20 20 C 1.38781 * 117.77591 * 209.01371 * 19 18 17 21 21 C 1.38013 * 120.51718 * 181.16601 * 20 19 18 22 22 C 1.38316 * 119.94281 * 0.15575 * 21 20 19 23 23 C 1.37828 * 119.87833 * 359.40595 * 22 21 20 24 24 C 1.38153 * 122.54374 * 29.24028 * 19 18 17 25 25 H 1.09003 * 109.47647 * 71.55695 * 1 2 3 26 26 H 1.09000 * 109.47236 * 191.55892 * 1 2 3 27 27 H 1.09002 * 109.47641 * 311.55910 * 1 2 3 28 28 H 0.97000 * 119.99941 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.76685 * 21.72362 * 13 12 2 30 30 H 1.09001 * 109.76584 * 260.94791 * 13 12 2 31 31 H 1.08999 * 109.46624 * 180.24284 * 16 14 13 32 32 H 1.08996 * 109.47149 * 300.24518 * 16 14 13 33 33 H 1.08998 * 109.46913 * 60.24704 * 16 14 13 34 34 H 1.00898 * 111.00564 * 297.49926 * 17 14 13 35 35 H 1.09000 * 109.12706 * 30.00442 * 18 17 14 36 36 H 1.08998 * 109.12707 * 149.09954 * 18 17 14 37 37 H 1.07995 * 119.74144 * 1.16721 * 20 19 18 38 38 H 1.07998 * 120.02640 * 180.17086 * 21 20 19 39 39 H 1.08001 * 120.06171 * 179.38785 * 22 21 20 40 40 H 1.08000 * 119.82003 * 179.91398 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9433 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4197 -5.2205 11 1 3.8063 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 1.2546 -0.2907 2.3891 14 6 1.0537 -1.5301 3.2603 15 1 0.9398 -1.2264 4.3009 16 6 -0.2045 -2.2728 2.8061 17 7 2.2160 -2.4167 3.1349 18 6 3.4251 -1.7176 3.5837 19 6 4.0964 -0.9992 2.4407 20 6 5.4721 -0.8271 2.5038 21 6 6.1411 -0.1565 1.5001 22 6 5.4388 0.3525 0.4226 23 6 4.0737 0.1777 0.3484 24 6 3.3951 -0.5120 1.3547 25 1 -0.3634 0.3251 -0.9749 26 1 -0.3634 -1.0068 0.2059 27 1 -0.3634 0.6817 0.7690 28 1 0.7093 1.1619 -3.4843 29 1 0.2864 0.1087 2.0873 30 1 1.8086 0.4652 2.9457 31 1 -0.3508 -3.1546 3.4299 32 1 -1.0684 -1.6146 2.8989 33 1 -0.0906 -2.5783 1.7661 34 1 2.3194 -2.7456 2.1866 35 1 3.1544 -0.9928 4.3514 36 1 4.1202 -2.4424 4.0075 37 1 6.0233 -1.2209 3.3448 38 1 7.2122 -0.0295 1.5558 39 1 5.9592 0.8862 -0.3590 40 1 3.5261 0.5767 -0.4926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230229384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:57 Heat of formation + Delta-G solvation = 37.679195 kcal Electronic energy + Delta-G solvation = -20750.839056 eV Core-core repulsion = 17951.255461 eV Total energy + Delta-G solvation = -2799.583595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62317 -38.31628 -37.35414 -34.59279 -33.31293 -31.56312 -30.87023 -29.16854 -27.62877 -26.44254 -25.34942 -23.79429 -21.97552 -21.51047 -20.49035 -18.57618 -17.90511 -17.09267 -16.77862 -16.52631 -15.99443 -15.52646 -15.16721 -14.93944 -14.60765 -14.49080 -14.14925 -13.81231 -13.68252 -13.04209 -12.95068 -12.77643 -12.68590 -12.59258 -12.43334 -12.38139 -12.14394 -12.07018 -11.92327 -11.63361 -11.31732 -11.07762 -10.60615 -10.26042 -9.67105 -9.27609 -8.40917 -8.14159 -6.23846 0.59047 0.69724 1.38902 1.39371 1.47023 2.37374 2.91802 3.09916 3.14848 3.61902 3.94170 4.02261 4.16940 4.24726 4.36420 4.39329 4.57892 4.62434 4.65404 4.68845 4.74995 4.82904 4.89220 4.91709 5.01754 5.07895 5.12392 5.19761 5.32311 5.40246 5.46008 5.57534 5.65138 5.69140 5.81919 5.87637 6.13721 6.20237 6.24798 6.45220 6.53849 6.73235 6.85742 7.40728 8.88450 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.009420 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.003985 B = 2971.556006 C = 4058.323629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.221 3.779 3 H -0.022 1.022 4 C -0.498 4.498 5 H 0.045 0.955 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.949 3.051 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.277 1.277 12 N -0.489 5.489 13 C 0.011 3.989 14 C 0.090 3.910 15 H 0.094 0.906 16 C -0.134 4.134 17 N -0.666 5.666 18 C 0.107 3.893 19 C -0.164 4.164 20 C -0.101 4.101 21 C -0.155 4.155 22 C -0.123 4.123 23 C -0.179 4.179 24 C 0.116 3.884 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.033 0.967 28 H 0.263 0.737 29 H 0.090 0.910 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.344 0.656 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.120 0.880 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 -2.715 11.563 12.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.115 3.885 3 H -0.004 1.004 4 C -0.536 4.536 5 H 0.063 0.937 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.775 3.225 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.202 1.202 12 N -0.203 5.203 13 C -0.116 4.116 14 C -0.021 4.021 15 H 0.112 0.888 16 C -0.191 4.191 17 N -0.295 5.295 18 C -0.022 4.022 19 C -0.169 4.169 20 C -0.120 4.120 21 C -0.174 4.174 22 C -0.141 4.141 23 C -0.199 4.199 24 C 0.017 3.983 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.138 0.862 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.562 -3.442 11.980 12.963 hybrid contribution 0.470 1.359 -2.245 2.666 sum 4.032 -2.083 9.735 10.741 Atomic orbital electron populations 1.21863 0.96745 0.98956 1.01268 1.19194 0.92565 0.90565 0.86172 1.00443 1.21076 1.30131 1.11832 0.90574 0.93673 1.25502 0.95469 0.95776 1.01263 1.69973 1.37432 1.23783 1.24187 0.85740 0.78595 0.78872 0.79253 1.19944 1.20782 1.20240 1.58605 1.00900 1.55995 1.04763 1.23323 0.99057 0.98478 0.90737 1.21730 0.91895 0.90416 0.98092 0.88764 1.21725 0.95900 1.00600 1.00886 1.61389 1.02363 1.35649 1.30061 1.20933 0.91755 0.96110 0.93445 1.20533 0.95148 1.03722 0.97461 1.21222 0.92731 0.98706 0.99336 1.21208 1.00539 1.00969 0.94681 1.21180 0.93693 1.00318 0.98941 1.22163 0.96126 1.00719 1.00920 1.18927 0.89752 0.94994 0.94649 0.91446 0.93821 0.94870 0.92787 0.89201 0.94775 0.91279 0.91608 0.94199 0.83673 0.90496 0.88604 0.83254 0.83944 0.86221 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.03 8.05 71.98 0.58 -5.45 16 2 C 0.22 10.82 1.71 44.17 0.08 10.89 16 3 H -0.02 -1.21 6.73 -2.38 -0.02 -1.23 16 4 C -0.50 -26.71 5.98 25.60 0.15 -26.55 16 5 H 0.04 2.54 7.66 -2.91 -0.02 2.51 16 6 C 0.02 1.03 5.25 84.65 0.44 1.47 16 7 N -0.91 -50.96 11.31 21.45 0.24 -50.72 16 8 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 N -0.49 -20.34 3.12 -675.70 -2.11 -22.44 16 13 C 0.01 0.38 4.68 86.21 0.40 0.79 16 14 C 0.09 2.57 2.94 44.89 0.13 2.71 16 15 H 0.09 2.31 7.98 -2.39 -0.02 2.29 16 16 C -0.13 -3.66 9.31 71.98 0.67 -2.99 16 17 N -0.67 -20.05 6.55 -496.63 -3.25 -23.31 16 18 C 0.11 2.95 5.90 85.62 0.51 3.46 16 19 C -0.16 -5.50 5.47 -19.73 -0.11 -5.60 16 20 C -0.10 -2.93 9.56 22.35 0.21 -2.72 16 21 C -0.16 -4.70 10.04 22.23 0.22 -4.47 16 22 C -0.12 -4.54 10.04 22.19 0.22 -4.31 16 23 C -0.18 -7.91 7.89 22.50 0.18 -7.73 16 24 C 0.12 4.76 5.12 38.22 0.20 4.96 16 25 H 0.07 3.51 5.85 -2.39 -0.01 3.49 16 26 H 0.04 1.92 7.50 -2.39 -0.02 1.90 16 27 H 0.03 1.36 6.35 -2.39 -0.02 1.34 16 28 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.09 3.16 4.50 -2.39 -0.01 3.15 16 30 H 0.03 1.18 7.68 -2.39 -0.02 1.17 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.62 8.11 -2.39 -0.02 1.60 16 33 H 0.04 1.30 7.51 -2.39 -0.02 1.28 16 34 H 0.34 12.30 7.29 -89.70 -0.65 11.65 16 35 H 0.08 1.95 7.61 -2.39 -0.02 1.93 16 36 H 0.10 2.26 8.01 -2.39 -0.02 2.24 16 37 H 0.15 3.18 8.03 -2.91 -0.02 3.16 16 38 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.12 6.47 4.45 -2.91 -0.01 6.46 16 Total: -1.00 -57.97 301.59 1.18 -56.78 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.39 Total: 29.53 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 3.89 Total: -35.55 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -5.12 Total: -96.47 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -57.97 1.18 -56.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230229384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.461 kcal (2) G-P(sol) polarization free energy of solvation -57.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds