Wall clock time and date at job start Mon Mar 30 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.38422 * 2 1 4 4 C 1.52819 * 109.43182 * 240.12596 * 2 1 3 5 5 N 1.47040 * 107.89763 * 273.02904 * 4 2 1 6 6 C 1.46901 * 111.00045 * 141.27116 * 5 4 2 7 7 C 1.52997 * 109.46961 * 297.65756 * 6 5 4 8 8 C 1.50703 * 109.46915 * 185.46971 * 7 6 5 9 9 H 1.08004 * 119.99819 * 0.27581 * 8 7 6 10 10 C 1.37876 * 120.00403 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00189 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99567 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47049 * 89.99912 * 12 10 8 14 14 H 1.48507 * 109.46797 * 210.00099 * 12 10 8 15 15 H 1.48494 * 109.47307 * 329.99906 * 12 10 8 16 16 C 1.39595 * 112.82817 * 266.58989 * 5 4 2 17 17 C 1.39576 * 117.60555 * 230.67758 * 16 5 4 18 18 C 1.37827 * 120.36142 * 181.61764 * 17 16 5 19 19 C 1.38313 * 119.87251 * 0.07951 * 18 17 16 20 20 C 1.38011 * 119.94557 * 359.26256 * 19 18 17 21 21 C 1.38192 * 122.78220 * 51.12451 * 16 5 4 22 22 C 1.50763 * 122.52267 * 357.39793 * 21 16 5 23 23 N 1.46701 * 111.25391 * 29.21595 * 22 21 16 24 24 H 1.09008 * 109.46710 * 179.87685 * 1 2 3 25 25 H 1.09003 * 109.47022 * 299.87023 * 1 2 3 26 26 H 1.08998 * 109.47408 * 59.87566 * 1 2 3 27 27 H 1.08995 * 109.77567 * 153.42581 * 4 2 1 28 28 H 1.09003 * 109.76962 * 32.62814 * 4 2 1 29 29 H 1.08997 * 109.46789 * 177.65394 * 6 5 4 30 30 H 1.08997 * 109.46899 * 57.65587 * 6 5 4 31 31 H 1.08996 * 109.47572 * 65.47207 * 7 6 5 32 32 H 1.08999 * 109.47445 * 305.46379 * 7 6 5 33 33 H 0.97000 * 119.99950 * 180.02562 * 11 10 8 34 34 H 1.07999 * 119.82018 * 1.64638 * 17 16 5 35 35 H 1.08001 * 120.06681 * 180.09938 * 18 17 16 36 36 H 1.07997 * 120.02970 * 179.23586 * 19 18 17 37 37 H 1.08003 * 119.74074 * 180.13015 * 20 19 18 38 38 H 1.08998 * 109.12560 * 268.75843 * 22 21 16 39 39 H 1.08997 * 109.12332 * 149.67122 * 22 21 16 40 40 H 1.00903 * 111.00178 * 32.58234 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0384 -0.7178 -1.2496 5 7 2.1190 -2.1540 -0.9445 6 6 1.6949 -2.9615 -2.0961 7 6 0.2303 -2.6594 -2.4191 8 6 -0.2439 -3.5826 -3.5118 9 1 0.4306 -4.3148 -3.9305 10 6 -1.5402 -3.4960 -3.9733 11 7 -1.9541 -4.3020 -4.9265 12 14 -2.7090 -2.2347 -3.2437 13 1 -2.6137 -0.9681 -4.0131 14 1 -4.0997 -2.7514 -3.3110 15 1 -2.3430 -1.9819 -1.8269 16 6 3.3836 -2.5429 -0.4992 17 6 3.9806 -3.6387 -1.1244 18 6 5.2137 -4.0919 -0.7076 19 6 5.8633 -3.4592 0.3367 20 6 5.2826 -2.3669 0.9486 21 6 4.0471 -1.8968 0.5265 22 6 3.4850 -0.6790 1.2150 23 7 2.0181 -0.6891 1.1999 24 1 -0.3633 -1.0278 -0.0022 25 1 -0.3633 0.5118 0.8912 26 1 -0.3634 0.5157 -0.8888 27 1 3.0261 -0.3412 -1.5151 28 1 1.3463 -0.5546 -2.0758 29 1 1.8038 -4.0194 -1.8577 30 1 2.3150 -2.7177 -2.9587 31 1 0.1371 -1.6254 -2.7512 32 1 -0.3773 -2.8105 -1.5268 33 1 -2.8660 -4.2408 -5.2515 34 1 3.4738 -4.1340 -1.9394 35 1 5.6721 -4.9393 -1.1958 36 1 6.8240 -3.8198 0.6735 37 1 5.7937 -1.8740 1.7624 38 1 3.8412 0.2159 0.7049 39 1 3.8313 -0.6614 2.2484 40 1 1.6625 -1.6323 1.2450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230232546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:47 Heat of formation + Delta-G solvation = 41.795420 kcal Electronic energy + Delta-G solvation = -20116.813654 eV Core-core repulsion = 17317.408552 eV Total energy + Delta-G solvation = -2799.405102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59967 -37.36357 -35.91189 -33.03268 -32.35160 -30.63084 -30.03796 -28.30386 -26.20750 -25.08119 -23.96934 -22.13279 -21.10996 -20.25750 -19.44339 -17.36004 -16.61381 -15.93771 -15.75101 -15.20885 -14.60935 -14.27053 -14.20517 -13.88698 -13.44326 -13.34457 -13.13851 -12.83816 -12.62888 -12.13264 -11.97245 -11.71756 -11.59840 -11.35410 -11.09408 -11.00017 -10.85609 -10.48880 -10.10709 -10.02335 -9.87918 -9.43681 -9.23719 -8.76777 -8.60560 -8.34448 -7.48587 -6.11655 -4.11094 1.47311 1.54115 3.25915 3.34706 3.38392 3.78328 4.01868 4.39085 4.58604 4.83835 4.99014 5.02471 5.12676 5.21279 5.24198 5.31878 5.46572 5.53165 5.60905 5.73131 5.77287 5.82265 5.91178 5.95477 6.04673 6.10393 6.17301 6.20557 6.45401 6.50541 6.53405 6.56711 6.67483 6.92314 7.01972 7.14789 7.22611 7.42935 7.57041 7.65390 7.71861 8.43245 8.91144 9.49836 11.01438 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.006637 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.231296 B = 4217.536569 C = 5286.496512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.077 0.923 4 C 0.021 3.979 5 N -0.499 5.499 6 C 0.067 3.933 7 C -0.006 4.006 8 C -0.524 4.524 9 H 0.071 0.929 10 C 0.070 3.930 11 N -0.901 5.901 12 Si 0.877 3.123 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.261 1.261 16 C 0.132 3.868 17 C -0.173 4.173 18 C -0.096 4.096 19 C -0.156 4.156 20 C -0.094 4.094 21 C -0.151 4.151 22 C 0.101 3.899 23 N -0.666 5.666 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.013 0.987 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.136 0.864 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.308 7.137 11.102 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.095 0.905 4 C -0.106 4.106 5 N -0.212 5.212 6 C -0.058 4.058 7 C -0.044 4.044 8 C -0.563 4.563 9 H 0.089 0.911 10 C -0.131 4.131 11 N -0.539 5.539 12 Si 0.704 3.296 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.185 1.185 16 C 0.032 3.968 17 C -0.194 4.194 18 C -0.115 4.115 19 C -0.175 4.175 20 C -0.113 4.113 21 C -0.155 4.155 22 C -0.028 4.028 23 N -0.297 5.297 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.153 0.847 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.638 7.612 11.758 18.211 hybrid contribution 0.078 -0.161 -1.132 1.146 sum 11.716 7.451 10.626 17.484 Atomic orbital electron populations 1.21833 0.93908 1.03152 1.01338 1.21700 0.96177 0.96810 0.87932 0.90482 1.23146 1.01191 0.85999 1.00292 1.58484 1.21068 1.05410 1.36239 1.22404 0.98716 0.96859 0.87840 1.19650 0.90780 0.96653 0.97310 1.21003 0.97713 1.18822 1.18738 0.91062 1.24975 0.98011 0.95625 0.94532 1.69905 1.17773 1.38179 1.28059 0.86810 0.80324 0.81799 0.80640 1.20311 1.21338 1.18537 1.18823 0.88129 0.95488 0.94329 1.21750 0.96314 0.99590 1.01748 1.20970 0.94777 0.99146 0.96614 1.20923 1.00497 0.97700 0.98426 1.20923 0.94495 0.96479 0.99385 1.20267 0.96563 1.00459 0.98220 1.20885 0.88567 0.94015 0.99368 1.61316 1.06188 1.24349 1.37798 0.91526 0.92382 0.92447 0.93561 0.88663 0.90237 0.94350 0.96916 0.95450 0.92617 0.84682 0.86355 0.86613 0.86365 0.91250 0.90286 0.82273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.32 37.16 0.35 -1.73 16 2 C 0.08 1.16 2.93 -67.90 -0.20 0.96 16 3 H 0.08 0.95 7.98 -51.93 -0.41 0.54 16 4 C 0.02 0.32 4.69 -3.84 -0.02 0.30 16 5 N -0.50 -8.37 3.26 -171.15 -0.56 -8.92 16 6 C 0.07 1.30 3.54 -3.82 -0.01 1.29 16 7 C -0.01 -0.15 3.86 -27.88 -0.11 -0.25 16 8 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 9 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 10 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 11 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 12 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 15 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 16 C 0.13 2.08 5.34 -83.84 -0.45 1.63 16 17 C -0.17 -2.68 8.75 -39.23 -0.34 -3.02 16 18 C -0.10 -1.27 10.04 -39.70 -0.40 -1.67 16 19 C -0.16 -1.88 10.04 -39.64 -0.40 -2.28 16 20 C -0.09 -1.14 9.56 -39.47 -0.38 -1.52 16 21 C -0.15 -2.07 5.47 -104.41 -0.57 -2.64 16 22 C 0.10 1.25 5.89 -5.05 -0.03 1.22 16 23 N -0.67 -9.17 6.55 -108.33 -0.71 -9.88 16 24 H 0.07 1.11 7.94 -51.92 -0.41 0.70 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 27 H 0.05 0.68 7.67 -51.93 -0.40 0.28 16 28 H 0.10 1.57 5.44 -51.93 -0.28 1.29 16 29 H 0.08 1.58 6.44 -51.93 -0.33 1.25 16 30 H 0.04 0.75 7.93 -51.93 -0.41 0.34 16 31 H 0.01 0.29 5.75 -51.93 -0.30 -0.01 16 32 H 0.03 0.65 7.00 -51.93 -0.36 0.28 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.14 2.16 5.43 -52.49 -0.29 1.88 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.14 8.03 -52.48 -0.42 0.72 16 38 H 0.07 0.81 7.60 -51.93 -0.39 0.42 16 39 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 40 H 0.36 5.51 7.29 -39.29 -0.29 5.22 16 LS Contribution 307.74 15.07 4.64 4.64 Total: -1.00 -29.18 307.74 -9.51 -38.69 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.00 Total: 6.13 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -2.99 Total: -20.64 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.49 Total: -45.38 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.18 -9.51 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230232546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.483 kcal (2) G-P(sol) polarization free energy of solvation -29.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds