Wall clock time and date at job start Mon Mar 30 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.38422 * 2 1 4 4 C 1.52819 * 109.43182 * 240.12596 * 2 1 3 5 5 N 1.47040 * 107.89763 * 273.02904 * 4 2 1 6 6 C 1.46901 * 111.00045 * 141.27116 * 5 4 2 7 7 C 1.52997 * 109.46961 * 297.65756 * 6 5 4 8 8 C 1.50703 * 109.46915 * 185.46971 * 7 6 5 9 9 H 1.08004 * 119.99819 * 0.27581 * 8 7 6 10 10 C 1.37876 * 120.00403 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00189 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99567 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47049 * 89.99912 * 12 10 8 14 14 H 1.48507 * 109.46797 * 210.00099 * 12 10 8 15 15 H 1.48494 * 109.47307 * 329.99906 * 12 10 8 16 16 C 1.39595 * 112.82817 * 266.58989 * 5 4 2 17 17 C 1.39576 * 117.60555 * 230.67758 * 16 5 4 18 18 C 1.37827 * 120.36142 * 181.61764 * 17 16 5 19 19 C 1.38313 * 119.87251 * 0.07951 * 18 17 16 20 20 C 1.38011 * 119.94557 * 359.26256 * 19 18 17 21 21 C 1.38192 * 122.78220 * 51.12451 * 16 5 4 22 22 C 1.50763 * 122.52267 * 357.39793 * 21 16 5 23 23 N 1.46701 * 111.25391 * 29.21595 * 22 21 16 24 24 H 1.09008 * 109.46710 * 179.87685 * 1 2 3 25 25 H 1.09003 * 109.47022 * 299.87023 * 1 2 3 26 26 H 1.08998 * 109.47408 * 59.87566 * 1 2 3 27 27 H 1.08995 * 109.77567 * 153.42581 * 4 2 1 28 28 H 1.09003 * 109.76962 * 32.62814 * 4 2 1 29 29 H 1.08997 * 109.46789 * 177.65394 * 6 5 4 30 30 H 1.08997 * 109.46899 * 57.65587 * 6 5 4 31 31 H 1.08996 * 109.47572 * 65.47207 * 7 6 5 32 32 H 1.08999 * 109.47445 * 305.46379 * 7 6 5 33 33 H 0.97000 * 119.99950 * 180.02562 * 11 10 8 34 34 H 1.07999 * 119.82018 * 1.64638 * 17 16 5 35 35 H 1.08001 * 120.06681 * 180.09938 * 18 17 16 36 36 H 1.07997 * 120.02970 * 179.23586 * 19 18 17 37 37 H 1.08003 * 119.74074 * 180.13015 * 20 19 18 38 38 H 1.08998 * 109.12560 * 268.75843 * 22 21 16 39 39 H 1.08997 * 109.12332 * 149.67122 * 22 21 16 40 40 H 1.00903 * 111.00178 * 32.58234 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0384 -0.7178 -1.2496 5 7 2.1190 -2.1540 -0.9445 6 6 1.6949 -2.9615 -2.0961 7 6 0.2303 -2.6594 -2.4191 8 6 -0.2439 -3.5826 -3.5118 9 1 0.4306 -4.3148 -3.9305 10 6 -1.5402 -3.4960 -3.9733 11 7 -1.9541 -4.3020 -4.9265 12 14 -2.7090 -2.2347 -3.2437 13 1 -2.6137 -0.9681 -4.0131 14 1 -4.0997 -2.7514 -3.3110 15 1 -2.3430 -1.9819 -1.8269 16 6 3.3836 -2.5429 -0.4992 17 6 3.9806 -3.6387 -1.1244 18 6 5.2137 -4.0919 -0.7076 19 6 5.8633 -3.4592 0.3367 20 6 5.2826 -2.3669 0.9486 21 6 4.0471 -1.8968 0.5265 22 6 3.4850 -0.6790 1.2150 23 7 2.0181 -0.6891 1.1999 24 1 -0.3633 -1.0278 -0.0022 25 1 -0.3633 0.5118 0.8912 26 1 -0.3634 0.5157 -0.8888 27 1 3.0261 -0.3412 -1.5151 28 1 1.3463 -0.5546 -2.0758 29 1 1.8038 -4.0194 -1.8577 30 1 2.3150 -2.7177 -2.9587 31 1 0.1371 -1.6254 -2.7512 32 1 -0.3773 -2.8105 -1.5268 33 1 -2.8660 -4.2408 -5.2515 34 1 3.4738 -4.1340 -1.9394 35 1 5.6721 -4.9393 -1.1958 36 1 6.8240 -3.8198 0.6735 37 1 5.7937 -1.8740 1.7624 38 1 3.8412 0.2159 0.7049 39 1 3.8313 -0.6614 2.2484 40 1 1.6625 -1.6323 1.2450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230232546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:46 Heat of formation + Delta-G solvation = 23.456081 kcal Electronic energy + Delta-G solvation = -20117.608908 eV Core-core repulsion = 17317.408552 eV Total energy + Delta-G solvation = -2800.200356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74715 -38.45551 -37.18857 -35.05261 -33.41985 -32.35636 -31.19537 -29.47547 -27.63483 -26.43830 -25.17323 -23.63612 -22.20058 -21.52659 -20.78405 -19.17848 -18.02296 -17.14582 -16.88287 -16.39137 -16.28536 -15.67185 -15.55950 -15.10082 -14.76642 -14.60312 -14.50280 -14.19805 -13.98487 -13.57575 -13.17944 -13.03572 -12.91201 -12.74961 -12.45000 -12.13282 -12.09019 -11.88257 -11.83790 -11.72703 -11.54530 -11.36931 -10.79124 -10.60235 -9.81721 -9.40723 -8.66262 -8.33318 -6.38429 0.43729 0.47614 1.33354 1.36758 1.48830 2.33347 2.62116 2.87782 3.02282 3.49799 3.78470 3.88442 3.96398 4.02757 4.18876 4.23842 4.32521 4.42299 4.47807 4.50873 4.58572 4.64587 4.71636 4.78552 4.84485 4.92489 4.97301 5.06132 5.11876 5.21133 5.31868 5.37921 5.46619 5.52345 5.59157 5.64814 5.91939 5.98639 6.16973 6.22649 6.38693 6.48177 6.68776 7.26465 8.83239 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.006637 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.231296 B = 4217.536569 C = 5286.496512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.099 0.901 4 C 0.020 3.980 5 N -0.498 5.498 6 C 0.084 3.916 7 C 0.006 3.994 8 C -0.535 4.535 9 H 0.031 0.969 10 C 0.010 3.990 11 N -0.949 5.949 12 Si 0.946 3.054 13 H -0.264 1.264 14 H -0.285 1.285 15 H -0.243 1.243 16 C 0.105 3.895 17 C -0.198 4.198 18 C -0.103 4.103 19 C -0.150 4.150 20 C -0.091 4.091 21 C -0.152 4.152 22 C 0.102 3.898 23 N -0.666 5.666 24 H 0.039 0.961 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.267 0.733 34 H 0.114 0.886 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.652 9.324 13.662 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 H 0.117 0.883 4 C -0.106 4.106 5 N -0.212 5.212 6 C -0.042 4.042 7 C -0.031 4.031 8 C -0.573 4.573 9 H 0.050 0.950 10 C -0.187 4.187 11 N -0.589 5.589 12 Si 0.769 3.231 13 H -0.189 1.189 14 H -0.211 1.211 15 H -0.166 1.166 16 C 0.007 3.993 17 C -0.219 4.219 18 C -0.122 4.122 19 C -0.169 4.169 20 C -0.110 4.110 21 C -0.157 4.157 22 C -0.028 4.028 23 N -0.295 5.295 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.170 0.830 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.019 9.809 14.336 21.708 hybrid contribution -0.184 -0.930 -1.939 2.158 sum 12.835 8.879 12.398 19.931 Atomic orbital electron populations 1.21809 0.94437 1.01594 1.02155 1.21717 0.95744 0.97553 0.87015 0.88261 1.23211 1.01164 0.85428 1.00841 1.58468 1.22484 1.05704 1.34561 1.21990 0.96542 0.96784 0.88892 1.19457 0.92682 0.95778 0.95230 1.21342 0.97430 1.18762 1.19797 0.95039 1.25937 0.99996 0.97906 0.94862 1.70057 1.18498 1.40445 1.29914 0.85714 0.77481 0.79129 0.80759 1.18860 1.21119 1.16631 1.18979 0.88151 0.96454 0.95762 1.21746 0.97677 1.00320 1.02169 1.21224 0.93987 0.99754 0.97196 1.21324 1.01360 0.97029 0.97153 1.21334 0.93735 0.96206 0.99694 1.20505 0.97026 1.00715 0.97415 1.21016 0.87554 0.93693 1.00488 1.61369 1.07204 1.23525 1.37376 0.94154 0.90985 0.92220 0.93041 0.90216 0.91592 0.95366 0.95928 0.95818 0.92396 0.86783 0.84789 0.83483 0.83032 0.90143 0.88241 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.32 71.98 0.67 -3.15 16 2 C 0.09 2.29 2.93 44.89 0.13 2.42 16 3 H 0.10 2.10 7.98 -2.39 -0.02 2.08 16 4 C 0.02 0.61 4.69 86.22 0.40 1.01 16 5 N -0.50 -16.76 3.26 -695.40 -2.27 -19.03 16 6 C 0.08 3.42 3.54 86.30 0.31 3.72 16 7 C 0.01 0.29 3.86 29.85 0.12 0.40 16 8 C -0.53 -30.85 9.66 25.60 0.25 -30.60 16 9 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 10 C 0.01 0.60 5.47 84.65 0.46 1.07 16 11 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 12 Si 0.95 43.99 27.47 68.60 1.88 45.88 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 14 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 15 H -0.24 -10.51 6.54 99.48 0.65 -9.86 16 16 C 0.10 3.26 5.34 38.22 0.20 3.46 16 17 C -0.20 -6.22 8.75 22.50 0.20 -6.02 16 18 C -0.10 -2.60 10.04 22.19 0.22 -2.37 16 19 C -0.15 -3.11 10.04 22.23 0.22 -2.89 16 20 C -0.09 -1.87 9.56 22.34 0.21 -1.65 16 21 C -0.15 -3.81 5.47 -19.73 -0.11 -3.92 16 22 C 0.10 2.17 5.89 85.61 0.50 2.68 16 23 N -0.67 -16.67 6.55 -496.64 -3.25 -19.93 16 24 H 0.04 1.29 7.94 -2.38 -0.02 1.27 16 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 1.55 8.12 -2.39 -0.02 1.53 16 27 H 0.05 1.45 7.67 -2.39 -0.02 1.43 16 28 H 0.08 2.59 5.44 -2.39 -0.01 2.58 16 29 H 0.07 2.81 6.44 -2.39 -0.02 2.80 16 30 H 0.03 1.17 7.93 -2.39 -0.02 1.15 16 31 H 0.02 1.01 5.75 -2.39 -0.01 1.00 16 32 H 0.02 1.12 7.00 -2.39 -0.02 1.10 16 33 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.11 3.94 5.43 -2.91 -0.02 3.92 16 35 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.15 2.11 8.03 -2.91 -0.02 2.09 16 38 H 0.08 1.57 7.60 -2.39 -0.02 1.55 16 39 H 0.10 1.75 8.01 -2.39 -0.02 1.73 16 40 H 0.35 10.15 7.29 -89.69 -0.65 9.49 16 Total: -1.00 -65.04 307.74 0.78 -64.26 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.32 Total: 23.95 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 3.79 Total: -35.86 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -5.22 Total: -98.23 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Total: -65.04 0.78 -64.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230232546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.718 kcal (2) G-P(sol) polarization free energy of solvation -65.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds