Wall clock time and date at job start Mon Mar 30 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 108.50846 * 2 1 4 4 C 1.51619 * 108.56800 * 117.81793 * 2 1 3 5 5 N 1.46968 * 111.01149 * 188.32899 * 4 2 1 6 6 C 1.46904 * 110.99742 * 36.39865 * 5 4 2 7 7 C 1.53003 * 109.46833 * 86.13784 * 6 5 4 8 8 C 1.50698 * 109.47036 * 179.97438 * 7 6 5 9 9 H 1.07992 * 120.00229 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99796 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00322 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99850 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47331 * 89.99807 * 12 10 8 14 14 H 1.48501 * 109.47145 * 209.99887 * 12 10 8 15 15 H 1.48507 * 109.47195 * 329.99863 * 12 10 8 16 16 C 1.40260 * 109.96860 * 273.18495 * 5 4 2 17 17 C 1.39013 * 119.77929 * 250.61125 * 16 5 4 18 18 C 1.38161 * 119.58063 * 179.76443 * 17 16 5 19 19 C 1.38301 * 120.18130 * 359.94047 * 18 17 16 20 20 C 1.38378 * 120.18622 * 0.11088 * 19 18 17 21 21 C 1.37988 * 120.18163 * 70.48750 * 16 5 4 22 22 C 1.51460 * 119.77194 * 0.58226 * 21 16 5 23 23 N 1.45687 * 108.44895 * 242.25477 * 2 1 3 24 24 H 1.09001 * 109.47017 * 302.18658 * 1 2 3 25 25 H 1.09006 * 109.46964 * 62.18241 * 1 2 3 26 26 H 1.09000 * 109.47510 * 182.17895 * 1 2 3 27 27 H 1.08995 * 109.16855 * 67.92891 * 4 2 1 28 28 H 1.09002 * 109.16924 * 308.72058 * 4 2 1 29 29 H 1.09003 * 109.47059 * 206.13569 * 6 5 4 30 30 H 1.08996 * 109.47344 * 326.14248 * 6 5 4 31 31 H 1.08999 * 109.46962 * 300.00212 * 7 6 5 32 32 H 1.09003 * 109.47148 * 60.00061 * 7 6 5 33 33 H 0.97001 * 120.00484 * 179.97438 * 11 10 8 34 34 H 1.08007 * 120.20634 * 359.78015 * 17 16 5 35 35 H 1.07999 * 119.90755 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.90675 * 180.08348 * 19 18 17 37 37 H 1.08002 * 120.15944 * 179.73227 * 20 19 18 38 38 H 1.09001 * 109.68439 * 170.98052 * 22 21 16 39 39 H 1.08995 * 109.70194 * 50.44715 * 22 21 16 40 40 H 1.00895 * 111.00131 * 46.07120 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8760 1.0336 0.0000 4 6 2.0128 -0.6707 1.2712 5 7 3.4674 -0.5263 1.4234 6 6 3.9198 0.7848 0.9394 7 6 3.7928 1.8149 2.0636 8 6 4.2575 3.1599 1.5673 9 1 4.6086 3.2690 0.5519 10 6 4.2353 4.2509 2.4100 11 7 3.8082 4.1181 3.6467 12 14 4.8105 5.9182 1.7947 13 1 3.6596 6.6558 1.2144 14 1 5.3765 6.6953 2.9265 15 1 5.8528 5.7291 0.7538 16 6 4.1251 -1.5653 0.7487 17 6 4.7667 -2.5625 1.4743 18 6 5.4091 -3.5866 0.8056 19 6 5.4124 -3.6197 -0.5770 20 6 4.7743 -2.6260 -1.2983 21 6 4.1340 -1.6004 -0.6307 22 6 3.4419 -0.5053 -1.4154 23 7 1.9910 -0.6434 -1.2231 24 1 -0.3633 0.5474 0.8697 25 1 -0.3633 0.4796 -0.9090 26 1 -0.3634 -1.0269 0.0391 27 1 1.7600 -1.7303 1.2349 28 1 1.5163 -0.2143 2.1275 29 1 4.9613 0.7166 0.6250 30 1 3.3044 1.0921 0.0939 31 1 2.7514 1.8831 2.3779 32 1 4.4082 1.5077 2.9091 33 1 3.7929 4.8856 4.2397 34 1 4.7628 -2.5368 2.5541 35 1 5.9096 -4.3638 1.3640 36 1 5.9148 -4.4231 -1.0953 37 1 4.7808 -2.6499 -2.3780 38 1 3.6830 -0.6035 -2.4738 39 1 3.7692 0.4692 -1.0532 40 1 1.4856 -0.2990 -2.0255 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230232550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:50 Heat of formation + Delta-G solvation = 58.017705 kcal Electronic energy + Delta-G solvation = -20109.160294 eV Core-core repulsion = 17310.458643 eV Total energy + Delta-G solvation = -2798.701651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.66393 -37.52210 -34.91724 -33.09018 -32.55729 -30.45587 -29.93784 -28.14933 -25.62418 -25.18607 -23.79269 -22.18809 -21.35590 -20.50787 -18.84576 -16.98274 -16.38535 -16.07946 -15.27025 -15.17631 -14.96240 -14.70723 -14.37147 -13.61243 -13.37690 -13.12208 -12.70108 -12.30575 -12.11212 -12.03493 -11.89467 -11.63510 -11.43039 -11.07764 -10.98739 -10.93570 -10.86744 -10.65564 -10.48725 -9.77056 -9.49349 -9.17133 -8.59564 -8.52660 -8.36451 -8.16689 -7.59437 -6.01073 -4.04160 1.58238 1.65182 3.29542 3.36328 3.39170 3.91424 4.31905 4.38835 4.51488 4.94226 5.07071 5.16408 5.23971 5.27618 5.34822 5.39921 5.50329 5.66449 5.68080 5.77086 5.86890 5.93977 6.00010 6.10099 6.14510 6.20057 6.31445 6.37668 6.51097 6.62506 6.71951 6.86061 7.01949 7.10367 7.15395 7.38762 7.47406 7.66368 7.84951 7.96621 8.08426 8.40445 9.03188 9.59628 11.10074 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.006052 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.912665 B = 4625.313374 C = 5124.583905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 H 0.063 0.937 4 C 0.073 3.927 5 N -0.498 5.498 6 C 0.040 3.960 7 C 0.035 3.965 8 C -0.524 4.524 9 H 0.051 0.949 10 C 0.060 3.940 11 N -0.891 5.891 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.108 3.892 17 C -0.101 4.101 18 C -0.122 4.122 19 C -0.134 4.134 20 C -0.106 4.106 21 C -0.098 4.098 22 C 0.067 3.933 23 N -0.684 5.684 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.016 0.984 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 -12.825 -9.063 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 H 0.080 0.920 4 C -0.055 4.055 5 N -0.217 5.217 6 C -0.085 4.085 7 C -0.003 4.003 8 C -0.563 4.563 9 H 0.070 0.930 10 C -0.141 4.141 11 N -0.530 5.530 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.013 3.987 17 C -0.120 4.120 18 C -0.140 4.140 19 C -0.152 4.152 20 C -0.126 4.126 21 C -0.101 4.101 22 C -0.061 4.061 23 N -0.317 5.317 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.247 -13.318 -8.061 15.729 hybrid contribution 0.234 1.904 -1.377 2.361 sum -2.014 -11.414 -9.438 14.947 Atomic orbital electron populations 1.21832 0.94347 1.02060 1.01904 1.21714 0.95700 0.98329 0.91185 0.91967 1.21953 0.87337 1.00672 0.95491 1.60655 1.04132 1.02157 1.54763 1.23044 0.98572 0.87085 0.99750 1.19005 0.97489 0.90835 0.92951 1.21161 1.43354 0.93804 0.97931 0.93030 1.24970 0.95364 0.98930 0.94851 1.69969 1.46880 1.30556 1.05559 0.86633 0.78940 0.84208 0.78440 1.20703 1.21135 1.19931 1.18911 0.96473 0.93333 0.89964 1.21109 0.97134 0.93516 1.00209 1.21027 1.00100 0.98541 0.94369 1.21037 1.00901 0.99027 0.94255 1.20880 0.98288 0.94215 0.99176 1.20406 0.98637 0.96896 0.94167 1.21646 0.87895 0.97619 0.98974 1.59508 1.03932 1.63507 1.04749 0.91666 0.92970 0.92223 0.91303 0.89621 0.92585 0.92651 0.96532 0.95853 0.92972 0.85486 0.86343 0.86641 0.86633 0.90811 0.90207 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.20 37.16 0.34 -1.47 16 2 C 0.04 0.63 2.51 -69.07 -0.17 0.46 16 3 H 0.06 1.12 5.59 -51.93 -0.29 0.83 16 4 C 0.07 1.23 5.14 -4.49 -0.02 1.21 16 5 N -0.50 -9.47 4.67 -171.94 -0.80 -10.27 16 6 C 0.04 0.86 2.92 -3.82 -0.01 0.85 16 7 C 0.03 0.91 5.21 -27.88 -0.15 0.76 16 8 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 9 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 12 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 16 C 0.11 1.87 4.27 -83.80 -0.36 1.51 16 17 C -0.10 -1.59 9.99 -39.32 -0.39 -1.98 16 18 C -0.12 -1.62 10.04 -39.59 -0.40 -2.02 16 19 C -0.13 -1.71 10.04 -39.51 -0.40 -2.10 16 20 C -0.11 -1.46 9.69 -39.58 -0.38 -1.84 16 21 C -0.10 -1.55 5.23 -104.39 -0.55 -2.10 16 22 C 0.07 0.99 6.02 -4.55 -0.03 0.96 16 23 N -0.68 -9.57 6.24 -109.10 -0.68 -10.25 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.59 8.04 -51.93 -0.42 0.17 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.13 7.77 -51.93 -0.40 0.73 16 28 H 0.09 1.49 8.09 -51.93 -0.42 1.07 16 29 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 30 H 0.06 1.13 2.60 -51.93 -0.13 1.00 16 31 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.33 7.98 -52.49 -0.42 0.91 16 38 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 39 H 0.08 1.35 4.25 -51.93 -0.22 1.13 16 40 H 0.34 4.06 8.55 -39.29 -0.34 3.72 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -30.39 311.10 -9.95 -40.35 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.95 Total: 4.14 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -2.92 Total: -19.19 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.75 Total: -46.53 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.39 -9.95 -40.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230232550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.364 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds