Wall clock time and date at job start Mon Mar 30 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 108.50846 * 2 1 4 4 C 1.51619 * 108.56800 * 117.81793 * 2 1 3 5 5 N 1.46968 * 111.01149 * 188.32899 * 4 2 1 6 6 C 1.46904 * 110.99742 * 36.39865 * 5 4 2 7 7 C 1.53003 * 109.46833 * 86.13784 * 6 5 4 8 8 C 1.50698 * 109.47036 * 179.97438 * 7 6 5 9 9 H 1.07992 * 120.00229 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99796 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00322 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99850 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47331 * 89.99807 * 12 10 8 14 14 H 1.48501 * 109.47145 * 209.99887 * 12 10 8 15 15 H 1.48507 * 109.47195 * 329.99863 * 12 10 8 16 16 C 1.40260 * 109.96860 * 273.18495 * 5 4 2 17 17 C 1.39013 * 119.77929 * 250.61125 * 16 5 4 18 18 C 1.38161 * 119.58063 * 179.76443 * 17 16 5 19 19 C 1.38301 * 120.18130 * 359.94047 * 18 17 16 20 20 C 1.38378 * 120.18622 * 0.11088 * 19 18 17 21 21 C 1.37988 * 120.18163 * 70.48750 * 16 5 4 22 22 C 1.51460 * 119.77194 * 0.58226 * 21 16 5 23 23 N 1.45687 * 108.44895 * 242.25477 * 2 1 3 24 24 H 1.09001 * 109.47017 * 302.18658 * 1 2 3 25 25 H 1.09006 * 109.46964 * 62.18241 * 1 2 3 26 26 H 1.09000 * 109.47510 * 182.17895 * 1 2 3 27 27 H 1.08995 * 109.16855 * 67.92891 * 4 2 1 28 28 H 1.09002 * 109.16924 * 308.72058 * 4 2 1 29 29 H 1.09003 * 109.47059 * 206.13569 * 6 5 4 30 30 H 1.08996 * 109.47344 * 326.14248 * 6 5 4 31 31 H 1.08999 * 109.46962 * 300.00212 * 7 6 5 32 32 H 1.09003 * 109.47148 * 60.00061 * 7 6 5 33 33 H 0.97001 * 120.00484 * 179.97438 * 11 10 8 34 34 H 1.08007 * 120.20634 * 359.78015 * 17 16 5 35 35 H 1.07999 * 119.90755 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.90675 * 180.08348 * 19 18 17 37 37 H 1.08002 * 120.15944 * 179.73227 * 20 19 18 38 38 H 1.09001 * 109.68439 * 170.98052 * 22 21 16 39 39 H 1.08995 * 109.70194 * 50.44715 * 22 21 16 40 40 H 1.00895 * 111.00131 * 46.07120 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8760 1.0336 0.0000 4 6 2.0128 -0.6707 1.2712 5 7 3.4674 -0.5263 1.4234 6 6 3.9198 0.7848 0.9394 7 6 3.7928 1.8149 2.0636 8 6 4.2575 3.1599 1.5673 9 1 4.6086 3.2690 0.5519 10 6 4.2353 4.2509 2.4100 11 7 3.8082 4.1181 3.6467 12 14 4.8105 5.9182 1.7947 13 1 3.6596 6.6558 1.2144 14 1 5.3765 6.6953 2.9265 15 1 5.8528 5.7291 0.7538 16 6 4.1251 -1.5653 0.7487 17 6 4.7667 -2.5625 1.4743 18 6 5.4091 -3.5866 0.8056 19 6 5.4124 -3.6197 -0.5770 20 6 4.7743 -2.6260 -1.2983 21 6 4.1340 -1.6004 -0.6307 22 6 3.4419 -0.5053 -1.4154 23 7 1.9910 -0.6434 -1.2231 24 1 -0.3633 0.5474 0.8697 25 1 -0.3633 0.4796 -0.9090 26 1 -0.3634 -1.0269 0.0391 27 1 1.7600 -1.7303 1.2349 28 1 1.5163 -0.2143 2.1275 29 1 4.9613 0.7166 0.6250 30 1 3.3044 1.0921 0.0939 31 1 2.7514 1.8831 2.3779 32 1 4.4082 1.5077 2.9091 33 1 3.7929 4.8856 4.2397 34 1 4.7628 -2.5368 2.5541 35 1 5.9096 -4.3638 1.3640 36 1 5.9148 -4.4231 -1.0953 37 1 4.7808 -2.6499 -2.3780 38 1 3.6830 -0.6035 -2.4738 39 1 3.7692 0.4692 -1.0532 40 1 1.4856 -0.2990 -2.0255 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230232550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:50 Heat of formation + Delta-G solvation = 38.025755 kcal Electronic energy + Delta-G solvation = -20110.027210 eV Core-core repulsion = 17310.458643 eV Total energy + Delta-G solvation = -2799.568567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.94962 -38.69446 -36.33060 -35.12398 -33.72122 -32.17273 -31.20390 -29.45973 -27.30497 -26.46235 -25.30774 -23.56039 -22.90117 -21.66311 -20.30683 -18.69477 -18.10073 -17.27116 -16.74127 -16.56239 -16.30905 -16.10114 -15.80868 -14.85993 -14.69231 -14.50805 -14.24937 -13.96781 -13.65444 -13.45287 -13.19833 -12.90398 -12.78292 -12.61627 -12.54051 -12.44935 -12.24872 -12.02768 -11.96755 -11.55463 -11.40581 -11.26181 -10.57391 -9.79956 -9.69611 -9.37368 -8.99203 -8.21921 -6.34369 0.45341 0.53226 1.37508 1.39375 1.50329 2.37446 2.79964 2.99974 3.11073 3.23353 3.83583 3.91611 3.97574 4.05933 4.15211 4.24876 4.33561 4.37620 4.43554 4.58355 4.65702 4.70613 4.77706 4.85050 4.90986 4.92184 5.06704 5.08256 5.21045 5.26037 5.41916 5.53643 5.57012 5.64353 5.73530 5.76481 5.94120 6.02537 6.03161 6.25650 6.45137 6.59916 6.82166 7.34987 8.90195 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.006052 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.912665 B = 4625.313374 C = 5124.583905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 H 0.031 0.969 4 C 0.074 3.926 5 N -0.513 5.513 6 C 0.064 3.936 7 C 0.046 3.954 8 C -0.544 4.544 9 H 0.058 0.942 10 C 0.004 3.996 11 N -0.930 5.930 12 Si 0.965 3.035 13 H -0.269 1.269 14 H -0.281 1.281 15 H -0.264 1.264 16 C 0.074 3.926 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.107 4.107 21 C -0.113 4.113 22 C 0.068 3.932 23 N -0.676 5.676 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.069 0.931 31 H -0.009 1.009 32 H -0.016 1.016 33 H 0.264 0.736 34 H 0.118 0.882 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 -13.837 -11.701 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.062 4.062 3 H 0.048 0.952 4 C -0.053 4.053 5 N -0.233 5.233 6 C -0.061 4.061 7 C 0.008 3.992 8 C -0.582 4.582 9 H 0.076 0.924 10 C -0.194 4.194 11 N -0.570 5.570 12 Si 0.789 3.211 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.188 1.188 16 C -0.020 4.020 17 C -0.140 4.140 18 C -0.137 4.137 19 C -0.144 4.144 20 C -0.126 4.126 21 C -0.116 4.116 22 C -0.060 4.060 23 N -0.310 5.310 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.010 0.990 32 H 0.002 0.998 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.161 0.839 38 H 0.121 0.879 39 H 0.070 0.930 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.832 -14.348 -10.719 18.004 hybrid contribution 0.127 2.094 -0.529 2.164 sum -1.705 -12.254 -11.248 16.721 Atomic orbital electron populations 1.21776 0.92111 1.02925 1.02609 1.21534 0.97455 0.96071 0.91161 0.95185 1.21935 0.86355 1.00942 0.96042 1.60434 1.05398 1.01665 1.55827 1.22629 0.98083 0.87471 0.97963 1.18807 0.94822 0.92238 0.93330 1.21545 1.43516 0.94829 0.98350 0.92424 1.25948 0.95206 1.03375 0.94890 1.70113 1.47878 1.31995 1.06981 0.85451 0.78853 0.78682 0.78085 1.19468 1.20657 1.18823 1.19059 0.98179 0.93582 0.91136 1.21239 0.98139 0.94511 1.00123 1.21358 0.99060 0.98069 0.95164 1.21488 0.99627 0.99295 0.93975 1.21236 0.97222 0.93416 1.00678 1.20552 0.99486 0.98027 0.93523 1.21610 0.88056 0.95957 1.00360 1.59473 1.03855 1.62968 1.04684 0.92269 0.91120 0.91089 0.90690 0.91259 0.93951 0.91334 0.99027 0.99774 0.92701 0.86344 0.83525 0.83023 0.83865 0.87944 0.92996 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.20 71.98 0.66 -2.68 16 2 C 0.05 1.51 2.51 44.69 0.11 1.62 16 3 H 0.03 1.13 5.59 -2.39 -0.01 1.12 16 4 C 0.07 2.62 5.14 85.84 0.44 3.06 16 5 N -0.51 -20.58 4.67 -697.91 -3.26 -23.85 16 6 C 0.06 2.88 2.92 86.30 0.25 3.13 16 7 C 0.05 2.55 5.21 29.85 0.16 2.70 16 8 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 9 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 10 C 0.00 0.24 5.46 84.66 0.46 0.70 16 11 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 12 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 16 C 0.07 2.62 4.27 37.92 0.16 2.78 16 17 C -0.12 -3.83 9.99 22.44 0.22 -3.61 16 18 C -0.12 -2.87 10.04 22.27 0.22 -2.65 16 19 C -0.13 -2.74 10.04 22.32 0.22 -2.52 16 20 C -0.11 -2.58 9.69 22.27 0.22 -2.37 16 21 C -0.11 -3.44 5.23 -19.71 -0.10 -3.54 16 22 C 0.07 1.94 6.02 85.78 0.52 2.45 16 23 N -0.68 -17.98 6.24 -499.07 -3.11 -21.09 16 24 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.47 8.04 -2.38 -0.02 1.45 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 2.52 7.77 -2.39 -0.02 2.50 16 28 H 0.07 2.60 8.09 -2.39 -0.02 2.58 16 29 H 0.04 1.97 7.66 -2.39 -0.02 1.95 16 30 H 0.07 2.93 2.60 -2.39 -0.01 2.92 16 31 H -0.01 -0.52 8.11 -2.39 -0.02 -0.54 16 32 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.12 3.79 8.06 -2.91 -0.02 3.76 16 35 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.14 2.64 7.98 -2.91 -0.02 2.62 16 38 H 0.10 2.27 7.93 -2.39 -0.02 2.25 16 39 H 0.05 1.77 4.25 -2.39 -0.01 1.76 16 40 H 0.36 7.66 8.55 -89.70 -0.77 6.90 16 Total: -1.00 -68.29 311.10 -0.02 -68.31 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.27 Total: 19.71 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 3.78 Total: -32.35 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -6.09 Total: -102.31 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.29 -0.02 -68.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230232550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.336 kcal (2) G-P(sol) polarization free energy of solvation -68.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds