Wall clock time and date at job start Mon Mar 30 2020 07:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00584 * 2 1 4 4 N 1.46901 * 109.47169 * 94.99842 * 3 2 1 5 5 C 1.46904 * 111.00215 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.99596 * 179.97438 * 2 1 3 7 7 N 1.46498 * 109.46994 * 94.99961 * 6 2 1 8 8 C 1.46500 * 120.00184 * 269.99731 * 7 6 2 9 9 C 1.50695 * 109.47360 * 270.00092 * 8 7 6 10 10 H 1.08006 * 119.99886 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00437 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99649 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00424 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47228 * 89.99920 * 13 11 9 15 15 H 1.48498 * 109.47336 * 210.00054 * 13 11 9 16 16 H 1.48502 * 109.46761 * 329.99956 * 13 11 9 17 17 C 1.39678 * 119.99677 * 90.00160 * 7 6 2 18 18 C 1.38915 * 120.06984 * 180.02562 * 17 7 6 19 19 C 1.38104 * 119.92359 * 179.97438 * 18 17 7 20 20 C 1.38288 * 120.07208 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.15288 * 0.02562 * 20 19 18 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 20 19 23 23 H 1.08001 * 119.99479 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.00220 * 180.02562 * 1 2 3 25 25 H 1.08988 * 109.47415 * 215.00158 * 3 2 1 26 26 H 1.09008 * 109.46545 * 335.00160 * 3 2 1 27 27 H 1.00895 * 110.99941 * 56.04817 * 4 3 2 28 28 H 1.08998 * 109.46917 * 59.99530 * 5 4 3 29 29 H 1.08995 * 109.47108 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.46265 * 300.00148 * 5 4 3 31 31 H 1.08995 * 109.47140 * 335.00002 * 6 2 1 32 32 H 1.09000 * 109.47152 * 215.00370 * 6 2 1 33 33 H 1.08994 * 109.46748 * 30.00133 * 8 7 6 34 34 H 1.09004 * 109.46919 * 150.00058 * 8 7 6 35 35 H 0.97006 * 120.00477 * 180.02562 * 12 11 9 36 36 H 1.07998 * 120.03739 * 359.69591 * 18 17 7 37 37 H 1.08001 * 119.96576 * 179.97438 * 19 18 17 38 38 H 1.08007 * 119.92458 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.96313 * 180.02562 * 21 20 19 40 40 H 1.08007 * 120.03349 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.4130 1.6687 1.3797 5 6 3.1498 2.9390 1.4189 6 6 2.0634 -1.3052 0.0006 7 7 2.4118 -1.6685 -1.3752 8 6 1.4914 -2.4822 -2.1734 9 6 1.8098 -3.9417 -1.9748 10 1 2.6173 -4.2340 -1.3198 11 6 1.0703 -4.9039 -2.6292 12 7 0.0873 -4.5479 -3.4271 13 14 1.4645 -6.7131 -2.3825 14 1 0.6768 -7.2399 -1.2392 15 1 1.1164 -7.4678 -3.6130 16 1 2.9138 -6.8696 -2.0991 17 6 3.6216 -1.2392 -1.9259 18 6 3.9532 -1.5824 -3.2305 19 6 5.1498 -1.1559 -3.7720 20 6 6.0173 -0.3876 -3.0173 21 6 5.6902 -0.0441 -1.7183 22 6 4.4952 -0.4673 -1.1706 23 1 -0.5399 0.9354 -0.0004 24 1 -0.5400 -0.9352 0.0004 25 1 2.9742 1.1987 -0.5894 26 1 1.4386 2.0854 -0.4343 27 1 2.9382 0.9318 1.8259 28 1 2.5322 3.7305 0.9945 29 1 3.3956 3.1848 2.4519 30 1 4.0680 2.8443 0.8391 31 1 1.4385 -2.0853 0.4352 32 1 2.9741 -1.1988 0.5900 33 1 0.4667 -2.2875 -1.8570 34 1 1.6011 -2.2265 -3.2273 35 1 -0.4333 -5.2248 -3.8873 36 1 3.2780 -2.1859 -3.8190 37 1 5.4085 -1.4227 -4.7861 38 1 6.9523 -0.0549 -3.4434 39 1 6.3697 0.5564 -1.1318 40 1 4.2406 -0.1991 -0.1558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231593521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:22 Heat of formation + Delta-G solvation = 53.098558 kcal Electronic energy + Delta-G solvation = -19596.895218 eV Core-core repulsion = 16797.980257 eV Total energy + Delta-G solvation = -2798.914961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.10789 -37.09084 -35.45295 -33.23277 -32.38963 -30.38990 -29.08835 -27.54045 -26.73049 -24.97751 -23.32080 -22.80950 -21.52773 -20.09780 -18.36049 -16.97136 -16.47362 -15.76984 -15.19932 -14.95961 -14.89568 -14.29209 -14.24198 -13.86962 -13.47891 -13.13298 -12.93409 -12.71105 -12.54026 -12.11862 -11.92070 -11.53432 -11.30192 -11.24344 -10.93947 -10.81349 -10.78139 -10.67275 -10.26619 -9.95312 -9.80316 -8.96802 -8.92443 -8.51602 -8.46780 -8.23338 -6.51596 -6.03885 -4.18364 2.05285 2.27750 2.48073 3.25354 3.32469 3.36829 4.15396 4.38205 4.48127 4.55621 5.06101 5.20615 5.24705 5.30252 5.42550 5.46838 5.50212 5.63055 5.73984 5.78809 5.82486 5.91408 6.03371 6.18741 6.22585 6.30073 6.38027 6.60011 6.84867 6.93190 7.02112 7.03896 7.13739 7.18264 7.24923 7.34946 7.35814 7.58167 7.80042 8.14594 8.24785 8.46228 8.90685 9.48575 10.94628 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.006767 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.087626 B = 4136.939522 C = 5320.720558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.144 4.144 3 C 0.087 3.913 4 N -0.689 5.689 5 C 0.027 3.973 6 C 0.161 3.839 7 N -0.603 5.603 8 C 0.252 3.748 9 C -0.532 4.532 10 H 0.059 0.941 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.242 3.758 18 C -0.187 4.187 19 C -0.076 4.076 20 C -0.205 4.205 21 C -0.080 4.080 22 C -0.222 4.222 23 H 0.093 0.907 24 H 0.101 0.899 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.340 0.660 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 10.851 5.674 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 C -0.041 4.041 4 N -0.320 5.320 5 C -0.123 4.123 6 C 0.037 3.963 7 N -0.308 5.308 8 C 0.132 3.868 9 C -0.570 4.570 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.135 3.865 18 C -0.209 4.209 19 C -0.095 4.095 20 C -0.225 4.225 21 C -0.098 4.098 22 C -0.245 4.245 23 H 0.111 0.889 24 H 0.119 0.881 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.157 0.843 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.081 10.984 5.754 13.400 hybrid contribution 0.946 -1.337 -0.294 1.664 sum 6.027 9.647 5.460 12.618 Atomic orbital electron populations 1.23749 0.95262 1.01665 0.98672 1.22113 0.95802 0.95356 1.01366 1.21129 0.99277 0.94595 0.89114 1.60500 1.48284 1.05468 1.17718 1.22187 0.96236 0.92527 1.01304 1.20240 0.98416 0.93003 0.84667 1.47161 1.17469 1.53713 1.12434 1.19260 0.87872 0.88771 0.90900 1.21578 1.16663 0.91111 1.27696 0.92281 1.24946 0.94883 0.99208 0.94932 1.69932 1.20232 1.33928 1.29223 0.86537 0.78804 0.84754 0.77627 1.20620 1.21116 1.19835 1.17926 0.85922 0.90684 0.91969 1.20929 0.98992 1.05827 0.95190 1.20831 0.93597 0.96298 0.98780 1.20647 1.00707 1.05577 0.95593 1.20650 0.95524 0.98521 0.95135 1.20536 0.96763 1.07207 1.00014 0.88869 0.88068 0.93042 0.91246 0.84294 0.91942 0.91653 0.95967 0.89921 0.91832 0.95093 0.94770 0.92659 0.85044 0.87101 0.87685 0.87625 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 13.88 29.01 0.40 -1.97 16 2 C -0.14 -2.26 5.15 -101.07 -0.52 -2.78 16 3 C 0.09 1.22 5.50 -4.98 -0.03 1.19 16 4 N -0.69 -8.43 6.84 -122.42 -0.84 -9.27 16 5 C 0.03 0.28 10.70 60.07 0.64 0.92 16 6 C 0.16 2.81 5.37 -5.19 -0.03 2.78 16 7 N -0.60 -12.46 2.57 -174.50 -0.45 -12.91 16 8 C 0.25 6.17 4.91 -5.20 -0.03 6.14 16 9 C -0.53 -14.26 9.39 -34.44 -0.32 -14.59 16 10 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 13 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 C 0.24 4.81 6.55 -83.78 -0.55 4.26 16 18 C -0.19 -3.79 9.20 -39.38 -0.36 -4.15 16 19 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 20 C -0.20 -3.25 10.04 -39.54 -0.40 -3.65 16 21 C -0.08 -1.25 10.04 -39.61 -0.40 -1.64 16 22 C -0.22 -3.80 7.38 -39.38 -0.29 -4.09 16 23 H 0.09 1.29 7.99 -52.49 -0.42 0.87 16 24 H 0.10 1.63 7.99 -52.49 -0.42 1.21 16 25 H 0.05 0.77 5.25 -51.94 -0.27 0.50 16 26 H 0.07 0.97 7.99 -51.92 -0.41 0.56 16 27 H 0.34 3.93 8.81 -39.29 -0.35 3.59 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 1.52 7.92 -51.93 -0.41 1.10 16 32 H 0.06 1.01 6.20 -51.93 -0.32 0.69 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.03 0.90 6.20 -51.93 -0.32 0.58 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.13 2.93 6.15 -52.49 -0.32 2.61 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.10 1.41 8.06 -52.48 -0.42 0.98 16 39 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.11 1.70 5.04 -52.48 -0.26 1.44 16 LS Contribution 329.50 15.07 4.97 4.97 Total: -1.00 -28.07 329.50 -8.99 -37.06 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.02 Total: 6.35 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -2.37 Total: -17.69 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.55 Total: -46.82 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.07 -8.99 -37.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231593521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.162 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds