Wall clock time and date at job start Mon Mar 30 2020 07:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00584 * 2 1 4 4 N 1.46901 * 109.47169 * 94.99842 * 3 2 1 5 5 C 1.46904 * 111.00215 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.99596 * 179.97438 * 2 1 3 7 7 N 1.46498 * 109.46994 * 94.99961 * 6 2 1 8 8 C 1.46500 * 120.00184 * 269.99731 * 7 6 2 9 9 C 1.50695 * 109.47360 * 270.00092 * 8 7 6 10 10 H 1.08006 * 119.99886 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00437 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99649 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00424 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47228 * 89.99920 * 13 11 9 15 15 H 1.48498 * 109.47336 * 210.00054 * 13 11 9 16 16 H 1.48502 * 109.46761 * 329.99956 * 13 11 9 17 17 C 1.39678 * 119.99677 * 90.00160 * 7 6 2 18 18 C 1.38915 * 120.06984 * 180.02562 * 17 7 6 19 19 C 1.38104 * 119.92359 * 179.97438 * 18 17 7 20 20 C 1.38288 * 120.07208 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.15288 * 0.02562 * 20 19 18 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 20 19 23 23 H 1.08001 * 119.99479 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.00220 * 180.02562 * 1 2 3 25 25 H 1.08988 * 109.47415 * 215.00158 * 3 2 1 26 26 H 1.09008 * 109.46545 * 335.00160 * 3 2 1 27 27 H 1.00895 * 110.99941 * 56.04817 * 4 3 2 28 28 H 1.08998 * 109.46917 * 59.99530 * 5 4 3 29 29 H 1.08995 * 109.47108 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.46265 * 300.00148 * 5 4 3 31 31 H 1.08995 * 109.47140 * 335.00002 * 6 2 1 32 32 H 1.09000 * 109.47152 * 215.00370 * 6 2 1 33 33 H 1.08994 * 109.46748 * 30.00133 * 8 7 6 34 34 H 1.09004 * 109.46919 * 150.00058 * 8 7 6 35 35 H 0.97006 * 120.00477 * 180.02562 * 12 11 9 36 36 H 1.07998 * 120.03739 * 359.69591 * 18 17 7 37 37 H 1.08001 * 119.96576 * 179.97438 * 19 18 17 38 38 H 1.08007 * 119.92458 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.96313 * 180.02562 * 21 20 19 40 40 H 1.08007 * 120.03349 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.4130 1.6687 1.3797 5 6 3.1498 2.9390 1.4189 6 6 2.0634 -1.3052 0.0006 7 7 2.4118 -1.6685 -1.3752 8 6 1.4914 -2.4822 -2.1734 9 6 1.8098 -3.9417 -1.9748 10 1 2.6173 -4.2340 -1.3198 11 6 1.0703 -4.9039 -2.6292 12 7 0.0873 -4.5479 -3.4271 13 14 1.4645 -6.7131 -2.3825 14 1 0.6768 -7.2399 -1.2392 15 1 1.1164 -7.4678 -3.6130 16 1 2.9138 -6.8696 -2.0991 17 6 3.6216 -1.2392 -1.9259 18 6 3.9532 -1.5824 -3.2305 19 6 5.1498 -1.1559 -3.7720 20 6 6.0173 -0.3876 -3.0173 21 6 5.6902 -0.0441 -1.7183 22 6 4.4952 -0.4673 -1.1706 23 1 -0.5399 0.9354 -0.0004 24 1 -0.5400 -0.9352 0.0004 25 1 2.9742 1.1987 -0.5894 26 1 1.4386 2.0854 -0.4343 27 1 2.9382 0.9318 1.8259 28 1 2.5322 3.7305 0.9945 29 1 3.3956 3.1848 2.4519 30 1 4.0680 2.8443 0.8391 31 1 1.4385 -2.0853 0.4352 32 1 2.9741 -1.1988 0.5900 33 1 0.4667 -2.2875 -1.8570 34 1 1.6011 -2.2265 -3.2273 35 1 -0.4333 -5.2248 -3.8873 36 1 3.2780 -2.1859 -3.8190 37 1 5.4085 -1.4227 -4.7861 38 1 6.9523 -0.0549 -3.4434 39 1 6.3697 0.5564 -1.1318 40 1 4.2406 -0.1991 -0.1558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231593521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:21 Heat of formation + Delta-G solvation = 37.207217 kcal Electronic energy + Delta-G solvation = -19597.584318 eV Core-core repulsion = 16797.980257 eV Total energy + Delta-G solvation = -2799.604062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.53250 -38.30880 -36.82306 -34.92326 -33.92821 -31.80334 -30.62691 -29.22357 -27.74486 -26.64045 -24.58984 -24.25681 -22.93648 -21.59475 -19.63684 -18.63445 -18.31549 -16.95295 -16.80818 -16.29406 -16.21924 -15.95612 -15.31974 -15.20403 -14.82561 -14.48296 -14.33325 -14.19526 -13.91700 -13.67843 -13.17386 -12.98684 -12.80185 -12.64412 -12.54473 -12.42711 -12.31201 -12.08205 -11.98235 -11.66956 -11.45126 -10.63690 -10.51014 -10.22388 -9.71545 -9.32691 -8.36620 -7.83492 -6.36469 0.67582 0.90395 1.20736 1.36725 1.37863 1.48697 2.35262 2.70602 3.07185 3.15239 3.45935 3.86689 4.01118 4.11105 4.22197 4.30798 4.45033 4.50990 4.60064 4.70775 4.73038 4.77604 4.78777 4.85310 4.92162 4.98348 5.06132 5.10921 5.22195 5.31579 5.57913 5.64532 5.69909 5.74373 5.87644 5.92334 6.01299 6.08705 6.21444 6.43914 6.50660 6.83245 6.93404 7.35433 8.83902 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.006767 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.087626 B = 4136.939522 C = 5320.720558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.146 4.146 3 C 0.099 3.901 4 N -0.693 5.693 5 C 0.027 3.973 6 C 0.162 3.838 7 N -0.614 5.614 8 C 0.273 3.727 9 C -0.541 4.541 10 H 0.049 0.951 11 C 0.014 3.986 12 N -0.926 5.926 13 Si 0.960 3.040 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.272 1.272 17 C 0.215 3.785 18 C -0.221 4.221 19 C -0.080 4.080 20 C -0.196 4.196 21 C -0.074 4.074 22 C -0.216 4.216 23 H 0.111 0.889 24 H 0.086 0.914 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.344 0.656 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.009 0.991 34 H 0.007 0.993 35 H 0.266 0.734 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.326 12.030 6.850 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.030 4.030 4 N -0.324 5.324 5 C -0.122 4.122 6 C 0.039 3.961 7 N -0.320 5.320 8 C 0.151 3.849 9 C -0.579 4.579 10 H 0.067 0.933 11 C -0.185 4.185 12 N -0.566 5.566 13 Si 0.785 3.215 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.197 1.197 17 C 0.111 3.889 18 C -0.243 4.243 19 C -0.099 4.099 20 C -0.216 4.216 21 C -0.092 4.092 22 C -0.239 4.239 23 H 0.130 0.870 24 H 0.104 0.896 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.162 0.838 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.400 12.188 6.947 15.861 hybrid contribution 0.322 -1.623 -0.675 1.787 sum 7.722 10.565 6.272 14.512 Atomic orbital electron populations 1.23818 0.95433 1.01834 0.98666 1.22119 0.95850 0.95450 1.01338 1.20954 0.98564 0.93306 0.90159 1.60479 1.49185 1.06451 1.16306 1.22255 0.96099 0.91327 1.02544 1.20291 0.99147 0.93416 0.83202 1.46951 1.17590 1.54262 1.13187 1.18688 0.87638 0.88554 0.89990 1.21781 1.16238 0.92542 1.27371 0.93282 1.25742 0.94681 1.03485 0.94577 1.70040 1.21152 1.35325 1.30054 0.85529 0.78528 0.79601 0.77862 1.19659 1.20511 1.19710 1.18192 0.86212 0.92146 0.92359 1.20854 1.00191 1.07489 0.95809 1.21078 0.92708 0.96224 0.99891 1.21074 1.01239 1.03780 0.95503 1.21124 0.95111 0.97652 0.95318 1.20746 0.96652 1.06016 1.00455 0.87040 0.89606 0.93814 0.91226 0.83809 0.91866 0.89946 0.95547 0.91718 0.89964 0.97318 0.97496 0.92455 0.88723 0.85419 0.84219 0.83700 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 13.88 67.78 0.94 -4.01 16 2 C -0.15 -4.55 5.15 -16.49 -0.08 -4.64 16 3 C 0.10 2.62 5.50 85.56 0.47 3.09 16 4 N -0.69 -15.37 6.84 -541.23 -3.70 -19.07 16 5 C 0.03 0.47 10.70 127.69 1.37 1.83 16 6 C 0.16 5.78 5.37 85.63 0.46 6.24 16 7 N -0.61 -26.33 2.57 -705.98 -1.82 -28.15 16 8 C 0.27 14.25 4.91 85.63 0.42 14.67 16 9 C -0.54 -30.28 9.39 25.60 0.24 -30.04 16 10 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 11 C 0.01 0.81 5.46 84.65 0.46 1.27 16 12 N -0.93 -54.42 13.29 21.45 0.28 -54.13 16 13 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 C 0.22 8.67 6.55 38.21 0.25 8.92 16 18 C -0.22 -9.25 9.20 22.40 0.21 -9.04 16 19 C -0.08 -2.72 10.04 22.25 0.22 -2.49 16 20 C -0.20 -5.53 10.04 22.29 0.22 -5.31 16 21 C -0.07 -2.02 10.04 22.25 0.22 -1.79 16 22 C -0.22 -6.95 7.38 22.40 0.17 -6.79 16 23 H 0.11 3.04 7.99 -2.91 -0.02 3.01 16 24 H 0.09 2.92 7.99 -2.91 -0.02 2.90 16 25 H 0.04 1.24 5.25 -2.39 -0.01 1.22 16 26 H 0.07 1.85 7.99 -2.38 -0.02 1.83 16 27 H 0.34 7.12 8.81 -89.70 -0.79 6.33 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 2.48 7.92 -2.39 -0.02 2.46 16 32 H 0.08 2.55 6.20 -2.39 -0.01 2.54 16 33 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 34 H 0.01 0.40 6.20 -2.39 -0.01 0.39 16 35 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 36 H 0.09 4.59 6.15 -2.91 -0.02 4.57 16 37 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 38 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 39 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.13 3.58 5.04 -2.91 -0.01 3.56 16 Total: -1.00 -62.41 329.50 2.59 -59.82 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.23 Total: 23.42 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 5.57 Total: -28.08 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -5.24 Total: -101.35 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -62.41 2.59 -59.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231593521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.025 kcal (2) G-P(sol) polarization free energy of solvation -62.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds