Wall clock time and date at job start Mon Mar 30 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99813 * 2 1 4 4 C 1.40017 * 111.00180 * 236.05046 * 2 1 3 5 5 C 1.38671 * 120.09571 * 61.11044 * 4 2 1 6 6 C 1.38268 * 119.99738 * 179.76917 * 5 4 2 7 7 C 1.38257 * 120.18854 * 0.51331 * 6 5 4 8 8 C 1.38265 * 120.19732 * 359.74022 * 7 6 5 9 9 C 1.38657 * 119.99681 * 0.02562 * 8 7 6 10 10 N 1.40028 * 120.09589 * 179.97438 * 9 8 7 11 11 C 1.46501 * 119.99761 * 5.33194 * 10 9 8 12 12 C 1.53000 * 109.47035 * 184.58166 * 11 10 9 13 13 C 1.50697 * 115.54972 * 39.50676 * 12 11 10 14 14 H 1.07998 * 120.00436 * 268.20473 * 13 12 11 15 15 C 1.37882 * 119.99739 * 88.20033 * 13 12 11 16 16 N 1.31513 * 119.99568 * 179.51222 * 15 13 12 17 17 Si 1.86794 * 120.00216 * 359.51436 * 15 13 12 18 18 H 1.48505 * 109.47018 * 88.43228 * 17 15 13 19 19 H 1.48502 * 109.47371 * 208.42937 * 17 15 13 20 20 H 1.48498 * 109.47155 * 328.43663 * 17 15 13 21 21 C 1.52995 * 117.49759 * 253.79935 * 12 11 10 22 22 C 1.52996 * 117.49753 * 185.17495 * 12 11 10 23 23 H 1.09008 * 109.46904 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47361 * 60.00052 * 1 2 3 25 25 H 1.09001 * 109.47514 * 299.99440 * 1 2 3 26 26 H 1.09003 * 109.46849 * 59.99997 * 3 2 1 27 27 H 1.08994 * 109.47619 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47298 * 300.00697 * 3 2 1 29 29 H 1.07994 * 119.99808 * 0.02677 * 5 4 2 30 30 H 1.07992 * 119.90555 * 180.25321 * 6 5 4 31 31 H 1.08009 * 119.89914 * 179.76600 * 7 6 5 32 32 H 1.07998 * 120.00084 * 179.97438 * 8 7 6 33 33 H 0.96997 * 119.99951 * 185.33106 * 10 9 8 34 34 H 1.08998 * 109.47023 * 304.58714 * 11 10 9 35 35 H 1.08999 * 109.46954 * 64.58094 * 11 10 9 36 36 H 0.97003 * 120.00072 * 180.02562 * 16 15 13 37 37 H 1.08994 * 117.50374 * 359.97438 * 21 12 11 38 38 H 1.09001 * 117.49978 * 145.02505 * 21 12 11 39 39 H 1.08994 * 117.50018 * 214.97952 * 22 12 11 40 40 H 1.09004 * 117.50044 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9708 -0.7300 -1.0843 5 6 1.6789 -0.3372 -2.3818 6 6 2.1795 -1.0567 -3.4511 7 6 2.9626 -2.1747 -3.2312 8 6 3.2543 -2.5765 -1.9408 9 6 2.7605 -1.8580 -0.8626 10 7 3.0542 -2.2634 0.4451 11 6 3.9780 -3.3766 0.6769 12 6 4.0360 -3.6880 2.1737 13 6 2.7207 -3.6108 2.9051 14 1 2.4170 -2.6866 3.3742 15 6 1.9048 -4.7201 2.9753 16 7 0.7613 -4.6554 3.6217 17 14 2.4235 -6.3147 2.1522 18 1 3.2364 -7.1191 3.0996 19 1 1.2160 -7.0844 1.7589 20 1 3.2307 -6.0083 0.9440 21 6 5.2940 -3.2652 2.9349 22 6 5.0410 -4.7445 2.6370 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5137 0.8900 26 1 1.6459 1.8947 0.8900 27 1 3.0850 1.3425 0.0005 28 1 1.6458 1.8948 -0.8899 29 1 1.0641 0.5332 -2.5570 30 1 1.9546 -0.7471 -4.4610 31 1 3.3481 -2.7355 -4.0699 32 1 3.8660 -3.4505 -1.7726 33 1 2.6460 -1.8072 1.1975 34 1 3.6297 -4.2564 0.1358 35 1 4.9723 -3.1031 0.3238 36 1 0.1874 -5.4359 3.6715 37 1 6.0805 -2.7657 2.3694 38 1 5.1704 -2.9311 3.9651 39 1 4.7510 -5.3834 3.4710 40 1 5.6605 -5.2180 1.8754 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234261556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:53 Heat of formation + Delta-G solvation = 66.219248 kcal Electronic energy + Delta-G solvation = -19833.962058 eV Core-core repulsion = 17035.616052 eV Total energy + Delta-G solvation = -2798.346005 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.58850 -37.37030 -36.08430 -34.12279 -32.11249 -29.57969 -28.97025 -27.30792 -25.90231 -24.97609 -24.14887 -21.70610 -21.07006 -20.63316 -19.01962 -16.97604 -16.37805 -15.94079 -15.30017 -14.89952 -14.72095 -14.27751 -13.93938 -13.63504 -13.45086 -13.43622 -12.78828 -12.62224 -12.29231 -12.17520 -11.94694 -11.82622 -11.43660 -11.33352 -11.12990 -10.79555 -10.63705 -10.47785 -10.15844 -9.64352 -9.53099 -9.06229 -8.59444 -8.49791 -8.40002 -8.17792 -6.63817 -6.13263 -4.17128 1.72599 2.10005 3.27667 3.37649 3.40009 4.15176 4.24568 4.30634 4.40470 4.92199 5.16394 5.26235 5.37952 5.41584 5.50942 5.61958 5.69146 5.75282 5.77265 5.97056 6.00280 6.02251 6.09106 6.10779 6.19901 6.24338 6.24657 6.43406 6.48934 6.66127 6.69818 6.81252 6.95911 6.98813 7.08486 7.21038 7.24250 7.64093 7.70872 8.20702 8.45803 8.76634 8.88350 9.49868 10.98054 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.006893 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.232768 B = 4061.145223 C = 4338.542651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.497 5.497 3 C 0.034 3.966 4 C -0.007 4.007 5 C -0.098 4.098 6 C -0.196 4.196 7 C -0.070 4.070 8 C -0.211 4.211 9 C 0.257 3.743 10 N -0.698 5.698 11 C 0.153 3.847 12 C -0.011 4.011 13 C -0.486 4.486 14 H 0.079 0.921 15 C 0.082 3.918 16 N -0.893 5.893 17 Si 0.881 3.119 18 H -0.279 1.279 19 H -0.296 1.296 20 H -0.259 1.259 21 C -0.178 4.178 22 C -0.199 4.199 23 H 0.071 0.929 24 H 0.022 0.978 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.420 0.580 34 H 0.053 0.947 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 7.153 -10.351 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.218 5.218 3 C -0.114 4.114 4 C -0.105 4.105 5 C -0.118 4.118 6 C -0.217 4.217 7 C -0.089 4.089 8 C -0.235 4.235 9 C 0.145 3.855 10 N -0.323 5.323 11 C 0.029 3.971 12 C -0.012 4.012 13 C -0.523 4.523 14 H 0.097 0.903 15 C -0.121 4.121 16 N -0.530 5.530 17 Si 0.710 3.290 18 H -0.205 1.205 19 H -0.223 1.223 20 H -0.184 1.184 21 C -0.215 4.215 22 C -0.236 4.236 23 H 0.089 0.911 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.260 0.740 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.634 6.660 -9.724 12.334 hybrid contribution -0.291 -0.493 -0.844 1.020 sum 3.344 6.167 -10.568 12.685 Atomic orbital electron populations 1.22408 0.86447 1.02609 0.99959 1.59332 1.07996 1.13275 1.41149 1.22385 1.00678 0.88200 1.00088 1.18161 1.05700 0.97747 0.88915 1.21194 0.98906 0.99017 0.92708 1.20542 1.04525 0.98892 0.97761 1.20796 0.96519 0.95745 0.95871 1.20588 1.08328 1.02850 0.91695 1.17833 0.91046 0.90439 0.86152 1.44936 1.48050 1.35227 1.04091 1.21068 0.90557 0.88693 0.96827 1.19568 0.91601 0.99083 0.90980 1.20124 0.99462 0.99203 1.33553 0.90310 1.24948 0.94388 0.98687 0.94068 1.69889 1.11140 1.30430 1.41540 0.86858 0.77650 0.83651 0.80848 1.20531 1.22295 1.18403 1.22884 1.00575 0.96622 1.01467 1.22950 1.04991 0.92341 1.03349 0.91053 0.95921 0.91331 0.91442 0.91542 0.95859 0.87323 0.87343 0.86919 0.86281 0.74039 0.92920 0.94561 0.92578 0.90939 0.89503 0.89254 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.30 60.06 0.56 1.05 16 2 N -0.50 -8.09 4.17 -186.64 -0.78 -8.87 16 3 C 0.03 0.45 9.32 60.06 0.56 1.01 16 4 C -0.01 -0.11 4.74 -83.50 -0.40 -0.51 16 5 C -0.10 -1.47 8.66 -39.41 -0.34 -1.81 16 6 C -0.20 -2.79 10.04 -39.56 -0.40 -3.18 16 7 C -0.07 -1.04 10.04 -39.56 -0.40 -1.43 16 8 C -0.21 -3.58 9.29 -39.42 -0.37 -3.95 16 9 C 0.26 4.79 6.67 -83.50 -0.56 4.23 16 10 N -0.70 -14.24 5.46 -58.45 -0.32 -14.56 16 11 C 0.15 3.14 5.02 -4.04 -0.02 3.11 16 12 C -0.01 -0.25 1.18 -155.67 -0.18 -0.43 16 13 C -0.49 -12.91 8.08 -34.44 -0.28 -13.19 16 14 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 15 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 16 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 17 Si 0.88 21.50 24.95 -169.99 -4.24 17.26 16 18 H -0.28 -6.67 7.08 56.52 0.40 -6.27 16 19 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.26 -5.99 5.52 56.52 0.31 -5.68 16 21 C -0.18 -3.52 9.88 -26.73 -0.26 -3.78 16 22 C -0.20 -4.09 7.58 -26.73 -0.20 -4.29 16 23 H 0.07 1.18 8.13 -51.92 -0.42 0.76 16 24 H 0.02 0.29 7.33 -51.93 -0.38 -0.09 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 28 H 0.02 0.28 7.42 -51.93 -0.39 -0.11 16 29 H 0.11 1.44 7.08 -52.49 -0.37 1.07 16 30 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 32 H 0.12 1.96 6.63 -52.49 -0.35 1.62 16 33 H 0.42 9.25 6.83 -40.82 -0.28 8.97 16 34 H 0.05 1.12 5.84 -51.93 -0.30 0.82 16 35 H 0.04 0.67 7.94 -51.93 -0.41 0.26 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 37 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 38 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.09 1.95 7.07 -51.93 -0.37 1.58 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -28.45 319.03 -8.44 -36.89 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.30 Total: 11.24 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.38 Total: -20.98 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.32 Total: -49.21 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.24 Total: 17.26 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.45 -8.44 -36.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234261556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.107 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds