Wall clock time and date at job start Mon Mar 30 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99813 * 2 1 4 4 C 1.40017 * 111.00180 * 236.05046 * 2 1 3 5 5 C 1.38671 * 120.09571 * 61.11044 * 4 2 1 6 6 C 1.38268 * 119.99738 * 179.76917 * 5 4 2 7 7 C 1.38257 * 120.18854 * 0.51331 * 6 5 4 8 8 C 1.38265 * 120.19732 * 359.74022 * 7 6 5 9 9 C 1.38657 * 119.99681 * 0.02562 * 8 7 6 10 10 N 1.40028 * 120.09589 * 179.97438 * 9 8 7 11 11 C 1.46501 * 119.99761 * 5.33194 * 10 9 8 12 12 C 1.53000 * 109.47035 * 184.58166 * 11 10 9 13 13 C 1.50697 * 115.54972 * 39.50676 * 12 11 10 14 14 H 1.07998 * 120.00436 * 268.20473 * 13 12 11 15 15 C 1.37882 * 119.99739 * 88.20033 * 13 12 11 16 16 N 1.31513 * 119.99568 * 179.51222 * 15 13 12 17 17 Si 1.86794 * 120.00216 * 359.51436 * 15 13 12 18 18 H 1.48505 * 109.47018 * 88.43228 * 17 15 13 19 19 H 1.48502 * 109.47371 * 208.42937 * 17 15 13 20 20 H 1.48498 * 109.47155 * 328.43663 * 17 15 13 21 21 C 1.52995 * 117.49759 * 253.79935 * 12 11 10 22 22 C 1.52996 * 117.49753 * 185.17495 * 12 11 10 23 23 H 1.09008 * 109.46904 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47361 * 60.00052 * 1 2 3 25 25 H 1.09001 * 109.47514 * 299.99440 * 1 2 3 26 26 H 1.09003 * 109.46849 * 59.99997 * 3 2 1 27 27 H 1.08994 * 109.47619 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47298 * 300.00697 * 3 2 1 29 29 H 1.07994 * 119.99808 * 0.02677 * 5 4 2 30 30 H 1.07992 * 119.90555 * 180.25321 * 6 5 4 31 31 H 1.08009 * 119.89914 * 179.76600 * 7 6 5 32 32 H 1.07998 * 120.00084 * 179.97438 * 8 7 6 33 33 H 0.96997 * 119.99951 * 185.33106 * 10 9 8 34 34 H 1.08998 * 109.47023 * 304.58714 * 11 10 9 35 35 H 1.08999 * 109.46954 * 64.58094 * 11 10 9 36 36 H 0.97003 * 120.00072 * 180.02562 * 16 15 13 37 37 H 1.08994 * 117.50374 * 359.97438 * 21 12 11 38 38 H 1.09001 * 117.49978 * 145.02505 * 21 12 11 39 39 H 1.08994 * 117.50018 * 214.97952 * 22 12 11 40 40 H 1.09004 * 117.50044 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9708 -0.7300 -1.0843 5 6 1.6789 -0.3372 -2.3818 6 6 2.1795 -1.0567 -3.4511 7 6 2.9626 -2.1747 -3.2312 8 6 3.2543 -2.5765 -1.9408 9 6 2.7605 -1.8580 -0.8626 10 7 3.0542 -2.2634 0.4451 11 6 3.9780 -3.3766 0.6769 12 6 4.0360 -3.6880 2.1737 13 6 2.7207 -3.6108 2.9051 14 1 2.4170 -2.6866 3.3742 15 6 1.9048 -4.7201 2.9753 16 7 0.7613 -4.6554 3.6217 17 14 2.4235 -6.3147 2.1522 18 1 3.2364 -7.1191 3.0996 19 1 1.2160 -7.0844 1.7589 20 1 3.2307 -6.0083 0.9440 21 6 5.2940 -3.2652 2.9349 22 6 5.0410 -4.7445 2.6370 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5137 0.8900 26 1 1.6459 1.8947 0.8900 27 1 3.0850 1.3425 0.0005 28 1 1.6458 1.8948 -0.8899 29 1 1.0641 0.5332 -2.5570 30 1 1.9546 -0.7471 -4.4610 31 1 3.3481 -2.7355 -4.0699 32 1 3.8660 -3.4505 -1.7726 33 1 2.6460 -1.8072 1.1975 34 1 3.6297 -4.2564 0.1358 35 1 4.9723 -3.1031 0.3238 36 1 0.1874 -5.4359 3.6715 37 1 6.0805 -2.7657 2.3694 38 1 5.1704 -2.9311 3.9651 39 1 4.7510 -5.3834 3.4710 40 1 5.6605 -5.2180 1.8754 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234261556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:53 Heat of formation + Delta-G solvation = 49.151189 kcal Electronic energy + Delta-G solvation = -19834.702184 eV Core-core repulsion = 17035.616052 eV Total energy + Delta-G solvation = -2799.086132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82990 -39.00316 -37.30537 -35.52031 -34.21529 -30.76997 -30.31606 -28.43840 -27.80450 -26.56762 -25.33365 -23.32273 -22.38090 -21.88366 -20.79105 -18.28983 -18.21131 -17.26126 -16.91103 -16.48024 -15.93178 -15.68415 -15.21896 -15.11485 -14.89657 -14.78702 -14.67133 -14.05779 -13.86042 -13.46424 -13.10074 -13.06604 -13.05263 -12.62300 -12.57257 -12.43656 -12.13450 -11.98967 -11.86069 -11.49185 -11.03975 -10.82714 -10.60807 -10.20241 -9.59248 -9.33118 -8.27708 -8.01751 -6.33489 0.52525 0.87153 1.33708 1.37450 1.47621 2.37138 2.73523 3.02358 3.08077 3.09581 3.31417 4.08317 4.10897 4.27891 4.30216 4.36544 4.40395 4.41628 4.51338 4.59790 4.64475 4.65250 4.76342 4.83158 4.86107 4.92651 4.98126 5.00922 5.05755 5.09618 5.31234 5.46133 5.48674 5.63522 5.71445 5.78980 6.06725 6.08948 6.27706 6.41583 6.72796 6.88408 7.17955 7.36015 8.87444 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.006893 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.232768 B = 4061.145223 C = 4338.542651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.522 5.522 3 C 0.038 3.962 4 C -0.017 4.017 5 C -0.101 4.101 6 C -0.186 4.186 7 C -0.071 4.071 8 C -0.222 4.222 9 C 0.223 3.777 10 N -0.716 5.716 11 C 0.166 3.834 12 C -0.039 4.039 13 C -0.472 4.472 14 H 0.034 0.966 15 C 0.026 3.974 16 N -0.946 5.946 17 Si 0.935 3.065 18 H -0.268 1.268 19 H -0.306 1.306 20 H -0.235 1.235 21 C -0.161 4.161 22 C -0.191 4.191 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.128 0.872 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.120 0.880 33 H 0.406 0.594 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.262 0.738 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 7.399 -13.139 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.243 5.243 3 C -0.109 4.109 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.207 4.207 7 C -0.089 4.089 8 C -0.245 4.245 9 C 0.115 3.885 10 N -0.342 5.342 11 C 0.041 3.959 12 C -0.040 4.040 13 C -0.510 4.510 14 H 0.052 0.948 15 C -0.172 4.172 16 N -0.586 5.586 17 Si 0.761 3.239 18 H -0.194 1.194 19 H -0.234 1.234 20 H -0.158 1.158 21 C -0.198 4.198 22 C -0.229 4.229 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.146 0.854 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.138 0.862 33 H 0.243 0.757 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.341 6.926 -12.557 15.303 hybrid contribution -0.842 -0.411 -0.008 0.937 sum 4.499 6.515 -12.564 14.851 Atomic orbital electron populations 1.22343 0.86056 1.01236 1.01345 1.59281 1.08567 1.14784 1.41695 1.22377 1.00170 0.87018 1.01352 1.18390 1.05528 0.97600 0.89989 1.21445 0.98957 0.99719 0.92044 1.20973 1.02824 0.97925 0.99009 1.21158 0.96025 0.95987 0.95777 1.20783 1.08526 1.02901 0.92336 1.18198 0.92760 0.91799 0.85768 1.44849 1.49122 1.35731 1.04491 1.20905 0.91701 0.88498 0.94791 1.19510 0.90270 1.02084 0.92095 1.20222 1.01356 0.97075 1.32356 0.94790 1.25731 0.94350 1.02183 0.94949 1.70041 1.12876 1.31324 1.44309 0.85978 0.77289 0.79625 0.80989 1.19376 1.23398 1.15807 1.22911 0.99537 0.96427 1.00953 1.23000 1.04029 0.92475 1.03401 0.93753 0.93780 0.90628 0.90554 0.92259 0.94120 0.85404 0.84206 0.83874 0.86198 0.75706 0.94074 0.92333 0.92876 0.87811 0.90503 0.90739 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.10 9.30 127.69 1.19 2.29 16 2 N -0.52 -16.96 4.17 -744.40 -3.10 -20.06 16 3 C 0.04 0.97 9.32 127.69 1.19 2.16 16 4 C -0.02 -0.56 4.74 38.23 0.18 -0.37 16 5 C -0.10 -2.78 8.66 22.38 0.19 -2.59 16 6 C -0.19 -4.62 10.04 22.28 0.22 -4.39 16 7 C -0.07 -1.86 10.04 22.28 0.22 -1.63 16 8 C -0.22 -7.16 9.29 22.38 0.21 -6.95 16 9 C 0.22 8.22 6.67 38.23 0.25 8.48 16 10 N -0.72 -29.52 5.46 -338.85 -1.85 -31.37 16 11 C 0.17 6.59 5.02 86.38 0.43 7.03 16 12 C -0.04 -1.69 1.18 -52.93 -0.06 -1.75 16 13 C -0.47 -25.96 8.08 25.60 0.21 -25.75 16 14 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 15 C 0.03 1.47 5.47 84.66 0.46 1.93 16 16 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 17 Si 0.94 44.51 24.95 68.60 1.71 46.22 16 18 H -0.27 -12.20 7.08 99.48 0.70 -11.50 16 19 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 20 H -0.23 -10.16 5.52 99.48 0.55 -9.61 16 21 C -0.16 -6.07 9.88 30.59 0.30 -5.76 16 22 C -0.19 -7.42 7.58 30.59 0.23 -7.19 16 23 H 0.04 1.52 8.13 -2.38 -0.02 1.50 16 24 H 0.04 1.09 7.33 -2.39 -0.02 1.07 16 25 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 28 H 0.04 0.89 7.42 -2.39 -0.02 0.88 16 29 H 0.13 2.97 7.08 -2.91 -0.02 2.95 16 30 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.12 3.75 6.63 -2.91 -0.02 3.73 16 33 H 0.41 18.66 6.83 -92.71 -0.63 18.02 16 34 H 0.04 1.70 5.84 -2.39 -0.01 1.68 16 35 H 0.06 2.03 7.94 -2.39 -0.02 2.01 16 36 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.10 3.27 8.08 -2.39 -0.02 3.26 16 38 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.07 3.12 7.07 -2.39 -0.02 3.10 16 40 H 0.10 3.41 8.14 -2.38 -0.02 3.40 16 Total: -1.00 -63.99 319.03 2.52 -61.47 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: 0.23 Total: 36.83 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 5.24 Total: -34.52 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -4.65 Total: -110.00 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.71 Total: 46.22 kcal Total: -63.99 2.52 -61.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234261556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.621 kcal (2) G-P(sol) polarization free energy of solvation -63.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds