Wall clock time and date at job start Mon Mar 30 2020 07:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30464 * 1 3 3 Si 1.86798 * 119.99787 * 2 1 4 4 H 1.48504 * 109.46826 * 275.25737 * 3 2 1 5 5 H 1.48499 * 109.47382 * 35.25811 * 3 2 1 6 6 H 1.48500 * 109.47238 * 155.26029 * 3 2 1 7 7 C 1.40470 * 120.00059 * 180.26920 * 2 1 3 8 8 H 1.08000 * 119.99907 * 173.39757 * 7 2 1 9 9 C 1.41363 * 120.00153 * 353.40511 * 7 2 1 10 10 O 1.21988 * 119.99723 * 6.26917 * 9 7 2 11 11 C 1.46962 * 120.00065 * 186.27570 * 9 7 2 12 12 N 1.30972 * 125.49797 * 180.02562 * 11 9 7 13 13 C 1.30404 * 115.94036 * 180.02562 * 12 11 9 14 14 C 1.35148 * 115.65485 * 359.97438 * 13 12 11 15 15 Br 1.89096 * 125.47098 * 180.02562 * 14 13 12 16 16 S 1.71068 * 109.05075 * 359.73355 * 14 13 12 17 17 H 0.97001 * 120.00333 * 359.72843 * 1 2 3 18 18 H 1.08000 * 122.16822 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3046 0.0000 0.0000 3 14 2.2386 1.6178 0.0000 4 1 2.3749 2.1105 -1.3942 5 1 1.4960 2.6181 0.8082 6 1 3.5873 1.4107 0.5859 7 6 2.0070 -1.2165 -0.0057 8 1 3.0816 -1.2191 -0.1133 9 6 1.3072 -2.4374 0.1292 10 8 0.0874 -2.4437 0.1355 11 6 2.0493 -3.6989 0.2619 12 7 1.5130 -4.8867 0.3919 13 6 2.3493 -5.8818 0.4961 14 6 3.6592 -5.5521 0.4551 15 35 5.1015 -6.7687 0.5801 16 16 3.8029 -3.8582 0.2638 17 1 -0.4851 0.8400 0.0040 18 1 2.0165 -6.9032 0.6079 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237968839.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:25 Heat of formation + Delta-G solvation = -22.297869 kcal Electronic energy + Delta-G solvation = -9899.945727 eV Core-core repulsion = 7682.602627 eV Total energy + Delta-G solvation = -2217.343100 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.920 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.66973 -38.56961 -34.91920 -33.30228 -30.65280 -29.11481 -26.59593 -23.39610 -20.23681 -19.72990 -18.27901 -17.44611 -16.34722 -15.86515 -15.27421 -15.20890 -14.17287 -14.08705 -13.37385 -13.11448 -12.78028 -12.58076 -12.30555 -12.02546 -11.50692 -11.05698 -10.86661 -10.37899 -9.83403 -9.73480 -8.52649 -7.27553 -0.80151 -0.17153 0.58241 0.74436 1.30405 1.41972 1.57278 1.61661 2.18766 2.33808 3.34906 3.41440 4.07424 4.24831 4.97619 5.06351 5.73376 6.33521 6.51237 6.75868 8.00788 8.32583 Molecular weight = 260.92amu Principal moments of inertia in cm(-1) A = 0.052599 B = 0.006107 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.203215 B = 4583.879685 C = 5103.867066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.026 3.974 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.239 1.239 7 C -0.516 4.516 8 H 0.104 0.896 9 C 0.384 3.616 10 O -0.570 6.570 11 C 0.016 3.984 12 N -0.481 5.481 13 C 0.065 3.935 14 C -0.304 4.304 15 Br 0.050 6.950 16 S 0.268 5.732 17 H 0.291 0.709 18 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.376 -7.309 0.938 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.196 4.196 3 Si 0.817 3.183 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.161 1.161 7 C -0.548 4.548 8 H 0.121 0.879 9 C 0.281 3.719 10 O -0.462 6.462 11 C -0.257 4.257 12 N -0.197 5.197 13 C -0.096 4.096 14 C -0.506 4.506 15 Br 0.132 6.868 16 S 0.524 5.476 17 H 0.102 0.898 18 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 14.412 -7.073 0.903 16.080 hybrid contribution -0.781 -0.410 0.095 0.887 sum 13.632 -7.483 0.998 15.582 Atomic orbital electron populations 1.70036 1.10236 1.30927 1.28787 1.27322 0.95533 1.05609 0.91107 0.84956 0.79431 0.73902 0.80051 1.17869 1.19011 1.16125 1.21250 0.96620 0.91226 1.45721 0.87851 1.18002 0.88205 0.84797 0.80928 1.90581 1.16225 1.87131 1.52258 1.30088 0.95227 0.98550 1.01828 1.67091 1.37788 0.98922 1.15853 1.22347 0.86675 1.00555 1.00015 1.27666 0.99176 1.01946 1.21775 1.96630 1.37458 1.55222 1.97505 1.83409 1.06468 0.95945 1.61777 0.89841 0.78545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.29 11.75 21.91 0.26 -43.03 13 2 C 0.03 1.29 5.50 85.44 0.47 1.76 13 3 Si 1.00 35.69 29.57 68.60 2.03 37.71 13 4 H -0.25 -8.59 7.11 99.48 0.71 -7.88 13 5 H -0.27 -9.13 7.11 99.48 0.71 -8.42 13 6 H -0.24 -7.77 7.11 99.48 0.71 -7.06 13 7 C -0.52 -27.01 9.00 23.58 0.21 -26.80 13 8 H 0.10 4.67 7.13 -2.91 -0.02 4.65 13 9 C 0.38 22.26 6.89 25.33 0.17 22.43 13 10 O -0.57 -38.45 15.64 -5.28 -0.08 -38.54 13 11 C 0.02 0.77 7.40 87.11 0.64 1.41 13 12 N -0.48 -22.76 10.60 -189.87 -2.01 -24.78 13 13 C 0.07 2.38 11.22 84.19 0.94 3.33 13 14 C -0.30 -9.85 6.84 67.11 0.46 -9.39 13 15 Br 0.05 1.19 34.08 -20.37 -0.69 0.49 13 16 S 0.27 9.57 22.16 -56.49 -1.25 8.32 13 17 H 0.29 14.35 8.29 -92.71 -0.77 13.58 13 18 H 0.20 5.78 8.06 -2.91 -0.02 5.76 13 Total: -1.00 -68.91 215.45 2.46 -66.45 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.31 Total: 0.62 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 2.91 Total: -7.25 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -1.75 Total: -67.81 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.08 Total: -38.54 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 16 Polarization: 9.57 SS G_CDS: -1.25 Total: 8.32 kcal Atomic # 35 Polarization: 1.19 SS G_CDS: -0.69 Total: 0.49 kcal Total: -68.91 2.46 -66.45 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237968839.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.154 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds