Wall clock time and date at job start Mon Mar 30 2020 07:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 120.00182 * 2 1 4 4 H 1.48509 * 109.46819 * 239.99871 * 3 2 1 5 5 H 1.48503 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47436 * 120.00165 * 3 2 1 7 7 C 1.39956 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99977 * 163.99326 * 7 2 1 9 9 C 1.41349 * 119.99778 * 343.99233 * 7 2 1 10 10 C 1.41068 * 120.66505 * 335.14159 * 9 7 2 11 11 C 1.38112 * 118.20132 * 180.02562 * 10 9 7 12 12 Cl 1.73608 * 120.28544 * 179.97438 * 11 10 9 13 13 C 1.38755 * 119.42798 * 359.97438 * 11 10 9 14 14 N 1.32039 * 121.31708 * 0.02562 * 13 11 10 15 15 C 1.31599 * 121.97734 * 0.02562 * 14 13 11 16 16 Br 1.89099 * 119.80199 * 179.97438 * 15 14 13 17 17 H 0.96994 * 119.99895 * 5.16961 * 1 2 3 18 18 H 1.08005 * 120.89937 * 0.04192 * 10 9 7 19 19 H 1.07996 * 119.34078 * 179.73061 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6962 -1.2126 5 1 1.2773 2.7464 -0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0080 -1.2121 0.0005 8 1 3.0567 -1.2303 -0.2574 9 6 1.3423 -2.4123 0.3387 10 6 0.1903 -2.3913 1.1526 11 6 -0.4194 -3.5939 1.4517 12 17 -1.8398 -3.6311 2.4492 13 6 0.1130 -4.7721 0.9480 14 7 1.1926 -4.7675 0.1879 15 6 1.8167 -3.6533 -0.1297 16 35 3.3586 -3.7183 -1.2223 17 1 -0.4850 0.8366 -0.0757 18 1 -0.2043 -1.4600 1.5314 19 1 -0.3624 -5.7121 1.1864 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238509775.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:35 Heat of formation + Delta-G solvation = -7.053873 kcal Electronic energy + Delta-G solvation = -10139.309558 eV Core-core repulsion = 7920.583781 eV Total energy + Delta-G solvation = -2218.725777 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.36516 -37.37288 -36.17340 -32.84003 -32.65833 -30.31300 -27.64716 -23.94352 -23.20965 -19.51512 -17.82609 -17.13889 -16.67639 -15.99954 -15.01084 -14.68126 -13.88027 -13.47415 -13.37276 -13.03647 -12.86542 -12.57964 -12.07772 -11.78282 -11.40143 -11.30162 -10.93077 -10.28973 -10.16641 -9.43853 -8.84927 -6.65032 0.33050 0.75835 0.91806 1.37599 1.40215 1.51349 1.53889 2.14359 2.52702 3.34602 4.11071 4.40499 4.58380 4.74568 5.05515 5.37040 5.52370 5.67348 6.18696 6.44773 6.54704 7.25821 8.06991 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.013632 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.998068 B = 2053.455030 C = 3736.803795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.443 4.443 8 H 0.104 0.896 9 C 0.070 3.930 10 C -0.139 4.139 11 C -0.044 4.044 12 Cl -0.074 7.074 13 C -0.031 4.031 14 N -0.439 5.439 15 C -0.024 4.024 16 Br -0.034 7.034 17 H 0.301 0.699 18 H 0.136 0.864 19 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 0.315 0.256 2.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.179 1.179 7 C -0.470 4.470 8 H 0.122 0.878 9 C 0.063 3.937 10 C -0.167 4.167 11 C -0.073 4.073 12 Cl -0.045 7.045 13 C -0.193 4.193 14 N -0.148 5.148 15 C -0.243 4.243 16 Br 0.049 6.951 17 H 0.112 0.888 18 H 0.154 0.846 19 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.867 -0.350 -0.328 2.907 hybrid contribution -0.733 1.230 0.575 1.543 sum 2.133 0.880 0.247 2.321 Atomic orbital electron populations 1.69750 1.09230 1.32292 1.30758 1.26955 0.95576 1.04956 0.90654 0.85127 0.78896 0.74594 0.80701 1.17829 1.18786 1.17907 1.20131 0.98871 0.90616 1.37408 0.87802 1.18418 0.91948 0.92977 0.90354 1.21666 0.98162 0.96522 1.00301 1.21960 0.91043 0.96309 0.97967 1.98276 1.38929 1.98917 1.68416 1.22021 0.96618 0.96560 1.04104 1.66778 1.07070 1.30285 1.10625 1.22707 1.00848 0.91271 1.09459 1.96309 1.33693 1.98953 1.66195 0.88763 0.84598 0.82136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.80 10.91 21.83 0.24 -36.56 13 2 C 0.04 1.70 5.20 85.26 0.44 2.15 13 3 Si 0.99 33.47 29.59 68.60 2.03 35.50 13 4 H -0.25 -8.41 7.11 99.48 0.71 -7.70 13 5 H -0.26 -8.43 7.11 99.48 0.71 -7.72 13 6 H -0.26 -8.49 7.11 99.48 0.71 -7.79 13 7 C -0.44 -21.28 8.49 23.45 0.20 -21.08 13 8 H 0.10 4.78 6.88 -2.91 -0.02 4.76 13 9 C 0.07 3.55 5.59 -21.18 -0.12 3.43 13 10 C -0.14 -6.78 8.60 22.93 0.20 -6.58 13 11 C -0.04 -1.93 6.33 22.36 0.14 -1.79 13 12 Cl -0.07 -2.71 28.98 -2.72 -0.08 -2.79 13 13 C -0.03 -1.39 10.98 84.79 0.93 -0.46 13 14 N -0.44 -21.03 10.30 -188.42 -1.94 -22.97 13 15 C -0.02 -1.19 7.24 85.37 0.62 -0.57 13 16 Br -0.03 -1.43 32.27 -20.37 -0.66 -2.09 13 17 H 0.30 12.42 8.30 -92.71 -0.77 11.65 13 18 H 0.14 6.75 6.23 -2.91 -0.02 6.73 13 19 H 0.16 6.09 8.06 -2.91 -0.02 6.07 13 Total: -1.00 -51.12 215.26 3.29 -47.83 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.29 Total: 6.00 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 2.41 Total: -24.91 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -1.70 Total: -59.53 kcal Atomic # 14 Polarization: 33.47 SS G_CDS: 2.03 Total: 35.50 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -0.08 Total: -2.79 kcal Atomic # 35 Polarization: -1.43 SS G_CDS: -0.66 Total: -2.09 kcal Total: -51.12 3.29 -47.83 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238509775.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.776 kcal (2) G-P(sol) polarization free energy of solvation -51.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds