Wall clock time and date at job start Mon Mar 30 2020 07:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86796 * 120.00474 * 2 1 4 4 H 1.48499 * 109.47395 * 240.00122 * 3 2 1 5 5 H 1.48504 * 109.46838 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46986 * 119.99821 * 3 2 1 7 7 C 1.40056 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00097 * 163.82240 * 7 2 1 9 9 C 1.41433 * 119.99925 * 343.82175 * 7 2 1 10 10 C 1.41041 * 121.03746 * 335.64009 * 9 7 2 11 11 C 1.37775 * 118.87448 * 179.72489 * 10 9 7 12 12 Br 1.89106 * 119.48483 * 180.27789 * 11 10 9 13 13 N 1.32129 * 121.03145 * 0.29889 * 11 10 9 14 14 C 1.31980 * 122.32891 * 359.97438 * 13 11 10 15 15 C 1.37913 * 120.99364 * 0.02562 * 14 13 11 16 16 Cl 1.73592 * 120.58120 * 180.02562 * 15 14 13 17 17 H 0.96995 * 119.99611 * 5.03651 * 1 2 3 18 18 H 1.08008 * 120.56342 * 0.02562 * 10 9 7 19 19 H 1.07997 * 119.50502 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0953 1.6963 -1.2125 5 1 1.2766 2.7464 0.0006 6 1 3.0953 1.6962 1.2125 7 6 2.0077 -1.2129 -0.0005 8 1 3.0556 -1.2314 -0.2611 9 6 1.3424 -2.4137 0.3402 10 6 0.1862 -2.4005 1.1478 11 6 -0.4297 -3.5959 1.4475 12 35 -1.9856 -3.5976 2.5223 13 7 0.0501 -4.7413 0.9961 14 6 1.1315 -4.8054 0.2421 15 6 1.8186 -3.6634 -0.1125 16 17 3.2394 -3.7601 -1.1052 17 1 -0.4849 0.8368 -0.0737 18 1 -0.2126 -1.4686 1.5208 19 1 1.4840 -5.7666 -0.1016 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238510052.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:51 Heat of formation + Delta-G solvation = -7.560482 kcal Electronic energy + Delta-G solvation = -10135.106400 eV Core-core repulsion = 7916.358654 eV Total energy + Delta-G solvation = -2218.747746 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.35245 -37.04652 -36.20211 -32.96979 -32.60464 -30.03336 -28.09736 -23.98776 -23.08653 -19.57118 -17.74846 -16.92674 -16.40038 -16.22868 -14.99624 -14.58364 -14.40746 -13.42530 -13.24894 -12.94270 -12.81769 -12.17839 -12.02245 -11.69757 -11.50003 -11.32513 -11.21158 -10.19193 -10.10858 -9.41346 -8.83621 -6.72428 0.36007 0.63306 0.75993 1.39514 1.51372 1.53841 1.72176 2.14002 2.55177 3.35206 3.93175 4.52095 4.61771 4.91329 5.06646 5.16846 5.51093 5.80378 6.20098 6.48474 6.58765 7.23611 8.08395 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.010152 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.229314 B = 2757.491043 C = 4014.483585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.039 3.961 3 Si 0.989 3.011 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.447 4.447 8 H 0.098 0.902 9 C 0.105 3.895 10 C -0.185 4.185 11 C 0.114 3.886 12 Br -0.034 7.034 13 N -0.564 5.564 14 C 0.132 3.868 15 C -0.197 4.197 16 Cl -0.080 7.080 17 H 0.301 0.699 18 H 0.134 0.866 19 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 -0.081 2.097 2.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.187 1.187 6 H -0.180 1.180 7 C -0.476 4.476 8 H 0.116 0.884 9 C 0.095 3.905 10 C -0.211 4.211 11 C -0.095 4.095 12 Br 0.050 6.950 13 N -0.281 5.281 14 C -0.025 4.025 15 C -0.230 4.230 16 Cl -0.052 7.052 17 H 0.112 0.888 18 H 0.152 0.848 19 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.609 -0.731 2.705 3.231 hybrid contribution 0.991 1.237 -0.634 1.707 sum -0.619 0.506 2.071 2.220 Atomic orbital electron populations 1.69730 1.09236 1.32257 1.30576 1.26962 0.95579 1.04979 0.90643 0.85120 0.78858 0.74694 0.80536 1.17999 1.18736 1.18028 1.20016 0.98646 0.90709 1.38214 0.88368 1.17956 0.91044 0.92521 0.88936 1.22058 0.99526 0.96852 1.02672 1.22436 0.95285 0.91798 0.99946 1.96469 1.33065 1.99111 1.66355 1.67284 1.15555 1.27363 1.17888 1.22300 0.89880 0.97130 0.93237 1.22017 0.96746 0.96085 1.08105 1.98209 1.39382 1.98413 1.69177 0.88774 0.84821 0.81719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.02 10.91 21.84 0.24 -36.79 13 2 C 0.04 1.74 5.21 85.30 0.44 2.18 13 3 Si 0.99 33.76 29.59 68.60 2.03 35.79 13 4 H -0.26 -8.52 7.11 99.48 0.71 -7.82 13 5 H -0.26 -8.47 7.11 99.48 0.71 -7.76 13 6 H -0.26 -8.62 7.11 99.48 0.71 -7.91 13 7 C -0.45 -21.53 8.62 23.50 0.20 -21.32 13 8 H 0.10 4.56 7.20 -2.91 -0.02 4.54 13 9 C 0.10 5.24 5.60 -21.08 -0.12 5.12 13 10 C -0.19 -9.21 8.50 22.85 0.19 -9.02 13 11 C 0.11 5.35 7.15 84.54 0.60 5.96 13 12 Br -0.03 -1.30 33.85 -20.37 -0.69 -1.99 13 13 N -0.56 -26.32 10.29 -191.20 -1.97 -28.29 13 14 C 0.13 5.77 10.97 84.59 0.93 6.70 13 15 C -0.20 -9.08 6.40 22.92 0.15 -8.94 13 16 Cl -0.08 -3.18 27.76 -2.72 -0.08 -3.25 13 17 H 0.30 12.53 8.30 -92.71 -0.77 11.76 13 18 H 0.13 6.78 6.22 -2.91 -0.02 6.76 13 19 H 0.17 6.07 8.06 -2.91 -0.02 6.05 13 Total: -1.00 -51.46 215.97 3.23 -48.23 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.29 Total: 5.61 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 2.40 Total: -19.32 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -1.73 Total: -65.07 kcal Atomic # 14 Polarization: 33.76 SS G_CDS: 2.03 Total: 35.79 kcal Atomic # 17 Polarization: -3.18 SS G_CDS: -0.08 Total: -3.25 kcal Atomic # 35 Polarization: -1.30 SS G_CDS: -0.69 Total: -1.99 kcal Total: -51.46 3.23 -48.23 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238510052.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.672 kcal (2) G-P(sol) polarization free energy of solvation -51.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds