Wall clock time and date at job start Mon Mar 30 2020 07:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86799 * 119.99782 * 2 1 4 4 H 1.48503 * 109.46905 * 270.00442 * 3 2 1 5 5 H 1.48498 * 109.46966 * 30.00102 * 3 2 1 6 6 H 1.48498 * 109.47212 * 150.00387 * 3 2 1 7 7 C 1.40031 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99957 * 179.97438 * 7 2 1 9 9 C 1.41329 * 119.99758 * 359.97438 * 7 2 1 10 10 C 1.40675 * 119.80551 * 180.02562 * 9 7 2 11 11 C 1.38121 * 119.02829 * 179.76829 * 10 9 7 12 12 C 1.39023 * 118.60271 * 0.44687 * 11 10 9 13 13 Br 1.89100 * 120.24364 * 179.80204 * 12 11 10 14 14 C 1.39086 * 119.51507 * 359.52743 * 12 11 10 15 15 Cl 1.73608 * 119.51830 * 180.27540 * 14 12 11 16 16 N 1.31482 * 120.96300 * 0.25051 * 14 12 11 17 17 H 0.96992 * 120.00458 * 359.97438 * 1 2 3 18 18 H 1.08000 * 120.48464 * 359.96934 * 10 9 7 19 19 H 1.08000 * 120.70184 * 180.24745 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6526 0.7001 6 1 3.5390 1.4402 0.6999 7 6 2.0077 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3010 -2.4366 -0.0005 10 6 2.0085 -3.6525 -0.0005 11 6 1.3017 -4.8392 0.0043 12 6 -0.0875 -4.7864 -0.0004 13 35 -1.1013 -6.3828 0.0003 14 6 -0.7263 -3.5510 0.0001 15 17 -2.4611 -3.4850 0.0014 16 7 -0.0355 -2.4323 0.0000 17 1 -0.4850 0.8399 0.0004 18 1 3.0885 -3.6580 -0.0010 19 1 1.8174 -5.7881 0.0085 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238516218.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:58 Heat of formation + Delta-G solvation = 1.545698 kcal Electronic energy + Delta-G solvation = -10109.714008 eV Core-core repulsion = 7891.361136 eV Total energy + Delta-G solvation = -2218.352872 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.22651 -37.30724 -35.68989 -33.20536 -32.27496 -30.54431 -27.33879 -23.97556 -23.15304 -19.66240 -17.88349 -16.57396 -16.44691 -15.97101 -15.03478 -14.70062 -14.09191 -13.09546 -13.02972 -12.87823 -12.48586 -12.38716 -12.08037 -11.97462 -11.89058 -11.06704 -10.82993 -10.19170 -9.83199 -9.50056 -8.48057 -6.72118 0.46137 0.86891 1.01683 1.25489 1.42088 1.50010 1.57483 2.17612 2.63007 3.62639 4.14173 4.52914 4.57922 4.77736 5.11650 5.28061 5.38080 5.77374 6.02221 6.47952 6.66488 7.74332 8.26087 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.049370 B = 0.007409 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.008686 B = 3778.278463 C = 4335.444600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.018 3.982 3 Si 0.995 3.005 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.248 1.248 7 C -0.429 4.429 8 H 0.110 0.890 9 C 0.230 3.770 10 C -0.272 4.272 11 C -0.018 4.018 12 C -0.280 4.280 13 Br -0.060 7.060 14 C 0.224 3.776 15 Cl -0.060 7.060 16 N -0.509 5.509 17 H 0.286 0.714 18 H 0.137 0.863 19 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 -5.497 0.021 5.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.207 4.207 3 Si 0.814 3.186 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.459 4.459 8 H 0.128 0.872 9 C 0.107 3.893 10 C -0.295 4.295 11 C -0.043 4.043 12 C -0.366 4.366 13 Br 0.023 6.977 14 C 0.048 3.952 15 Cl -0.032 7.032 16 N -0.225 5.225 17 H 0.097 0.903 18 H 0.155 0.845 19 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.372 -5.108 0.027 5.122 hybrid contribution 0.442 0.214 -0.011 0.491 sum 0.069 -4.894 0.016 4.895 Atomic orbital electron populations 1.70201 1.09237 1.30152 1.26285 1.27195 0.95749 1.05211 0.92494 0.85003 0.79084 0.74882 0.79647 1.18585 1.19525 1.17112 1.20291 0.95738 0.89647 1.40193 0.87199 1.18981 0.86699 0.94226 0.89376 1.22058 1.00608 0.92099 1.14783 1.21107 0.90727 0.98924 0.93536 1.21904 0.95180 0.89420 1.30116 1.96354 1.72612 1.30183 1.98596 1.21776 0.86811 0.89920 0.96651 1.98293 1.09608 1.98731 1.96565 1.68021 1.08639 1.25291 1.20586 0.90314 0.84511 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.88 11.46 21.84 0.25 -37.63 13 2 C 0.02 0.84 5.50 85.29 0.47 1.31 13 3 Si 0.99 34.72 29.56 68.60 2.03 36.75 13 4 H -0.26 -8.86 7.11 99.48 0.71 -8.15 13 5 H -0.27 -9.23 7.11 99.48 0.71 -8.52 13 6 H -0.25 -8.14 7.11 99.48 0.71 -7.43 13 7 C -0.43 -21.08 9.14 23.47 0.21 -20.87 13 8 H 0.11 4.82 7.85 -2.91 -0.02 4.79 13 9 C 0.23 11.87 6.55 40.22 0.26 12.13 13 10 C -0.27 -12.07 9.84 22.84 0.22 -11.85 13 11 C -0.02 -0.75 9.91 22.43 0.22 -0.53 13 12 C -0.28 -12.28 6.28 22.66 0.14 -12.14 13 13 Br -0.06 -2.16 32.54 -20.37 -0.66 -2.83 13 14 C 0.22 11.03 7.28 84.95 0.62 11.65 13 15 Cl -0.06 -2.63 27.89 -2.72 -0.08 -2.70 13 16 N -0.51 -27.62 7.84 -179.90 -1.41 -29.03 13 17 H 0.29 13.26 8.29 -92.71 -0.77 12.49 13 18 H 0.14 5.26 8.06 -2.91 -0.02 5.23 13 19 H 0.15 4.98 8.06 -2.91 -0.02 4.96 13 Total: -1.00 -55.94 217.36 3.57 -52.37 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.28 Total: 3.37 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 2.15 Total: -20.30 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -1.16 Total: -66.66 kcal Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.75 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.08 Total: -2.70 kcal Atomic # 35 Polarization: -2.16 SS G_CDS: -0.66 Total: -2.83 kcal Total: -55.94 3.57 -52.37 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238516218.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.916 kcal (2) G-P(sol) polarization free energy of solvation -55.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds