Wall clock time and date at job start Mon Mar 30 2020 07:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86799 * 120.00242 * 2 1 4 4 H 1.48497 * 109.47278 * 239.99960 * 3 2 1 5 5 H 1.48503 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46817 * 119.99931 * 3 2 1 7 7 C 1.39951 * 119.99562 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99480 * 163.91423 * 7 2 1 9 9 C 1.41335 * 120.00262 * 343.91994 * 7 2 1 10 10 C 1.41070 * 120.66019 * 335.33966 * 9 7 2 11 11 C 1.38093 * 118.20401 * 180.02562 * 10 9 7 12 12 Br 1.89101 * 120.28109 * 179.97438 * 11 10 9 13 13 C 1.38722 * 119.44236 * 0.02562 * 11 10 9 14 14 N 1.32052 * 121.32485 * 0.02562 * 13 11 10 15 15 C 1.31620 * 121.97080 * 359.97438 * 14 13 11 16 16 Cl 1.73600 * 119.80716 * 180.02562 * 15 14 13 17 17 H 0.97005 * 119.99925 * 5.17675 * 1 2 3 18 18 H 1.07995 * 120.90118 * 0.04590 * 10 9 7 19 19 H 1.08003 * 119.34269 * 179.71711 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2121 -0.0005 8 1 3.0563 -1.2302 -0.2597 9 6 1.3428 -2.4123 0.3379 10 6 0.1893 -2.3911 1.1497 11 6 -0.4201 -3.5935 1.4494 12 35 -1.9692 -3.6335 2.5332 13 6 0.1144 -4.7720 0.9496 14 7 1.1960 -4.7683 0.1921 15 6 1.8196 -3.6540 -0.1269 16 17 3.2371 -3.7143 -1.1273 17 1 -0.4850 0.8367 -0.0758 18 1 -0.2068 -1.4597 1.5264 19 1 -0.3608 -5.7120 1.1887 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238518048.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:43 Heat of formation + Delta-G solvation = -5.819740 kcal Electronic energy + Delta-G solvation = -10140.534982 eV Core-core repulsion = 7921.862721 eV Total energy + Delta-G solvation = -2218.672261 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.37756 -37.08866 -36.17952 -33.47151 -32.44721 -30.07071 -27.72492 -24.04697 -23.13937 -19.40027 -17.93474 -17.48031 -16.59835 -15.60854 -15.05359 -14.65387 -14.06303 -13.49784 -13.38248 -12.85640 -12.77437 -12.47476 -12.03127 -11.68717 -11.64262 -11.33075 -11.18290 -10.31732 -10.14335 -9.46136 -8.83783 -6.61263 0.30194 0.73493 0.75027 1.40084 1.46385 1.50951 1.53705 2.14640 2.52419 3.34345 4.11396 4.42849 4.53863 4.71543 5.06496 5.34806 5.51182 5.66325 6.18917 6.44554 6.55774 7.25773 8.08560 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.021252 B = 0.010087 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.216134 B = 2775.133180 C = 4018.191114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.038 3.962 3 Si 0.989 3.011 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.445 4.445 8 H 0.099 0.901 9 C 0.056 3.944 10 C -0.116 4.116 11 C -0.107 4.107 12 Br -0.048 7.048 13 C -0.007 4.007 14 N -0.463 5.463 15 C 0.040 3.960 16 Cl -0.060 7.060 17 H 0.301 0.699 18 H 0.138 0.862 19 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.365 0.266 3.547 4.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.187 1.187 6 H -0.180 1.180 7 C -0.473 4.473 8 H 0.117 0.883 9 C 0.049 3.951 10 C -0.144 4.144 11 C -0.188 4.188 12 Br 0.036 6.964 13 C -0.167 4.167 14 N -0.173 5.173 15 C -0.127 4.127 16 Cl -0.032 7.032 17 H 0.112 0.888 18 H 0.156 0.844 19 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.721 -0.391 3.600 4.529 hybrid contribution 0.325 1.208 -0.172 1.263 sum -2.396 0.818 3.427 4.261 Atomic orbital electron populations 1.69743 1.09134 1.32234 1.31182 1.26929 0.95611 1.04887 0.90751 0.85113 0.78848 0.74673 0.80556 1.18044 1.18738 1.17990 1.19993 0.98668 0.90676 1.37938 0.88332 1.18386 0.92646 0.92730 0.91309 1.21701 0.97357 0.96515 0.98837 1.22741 0.96282 0.97321 1.02470 1.96466 1.34173 1.99247 1.66537 1.21955 0.95475 0.96519 1.02799 1.66379 1.08046 1.30778 1.12079 1.21718 0.95837 0.90353 1.04837 1.98228 1.38250 1.98612 1.68107 0.88785 0.84409 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.95 10.90 21.83 0.24 -36.72 13 2 C 0.04 1.67 5.20 85.26 0.44 2.12 13 3 Si 0.99 33.72 29.59 68.60 2.03 35.75 13 4 H -0.26 -8.56 7.11 99.48 0.71 -7.86 13 5 H -0.26 -8.45 7.11 99.48 0.71 -7.74 13 6 H -0.26 -8.58 7.11 99.48 0.71 -7.87 13 7 C -0.45 -21.56 8.55 23.45 0.20 -21.36 13 8 H 0.10 4.60 7.11 -2.91 -0.02 4.58 13 9 C 0.06 2.84 5.59 -21.17 -0.12 2.72 13 10 C -0.12 -5.64 8.56 22.93 0.20 -5.44 13 11 C -0.11 -4.68 6.24 22.35 0.14 -4.54 13 12 Br -0.05 -1.70 33.72 -20.37 -0.69 -2.38 13 13 C -0.01 -0.33 10.93 84.78 0.93 0.60 13 14 N -0.46 -22.25 10.32 -184.40 -1.90 -24.15 13 15 C 0.04 1.96 7.35 85.38 0.63 2.59 13 16 Cl -0.06 -2.60 27.76 -2.72 -0.08 -2.68 13 17 H 0.30 12.43 8.30 -92.70 -0.77 11.66 13 18 H 0.14 6.79 6.22 -2.91 -0.02 6.78 13 19 H 0.16 6.09 8.06 -2.91 -0.02 6.06 13 Total: -1.00 -51.18 215.72 3.31 -47.88 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.29 Total: 5.61 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 2.42 Total: -23.32 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -1.66 Total: -60.87 kcal Atomic # 14 Polarization: 33.72 SS G_CDS: 2.03 Total: 35.75 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.68 kcal Atomic # 35 Polarization: -1.70 SS G_CDS: -0.69 Total: -2.38 kcal Total: -51.18 3.31 -47.88 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238518048.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.058 kcal (2) G-P(sol) polarization free energy of solvation -51.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds