Wall clock time and date at job start Mon Mar 30 2020 07:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86809 * 120.00104 * 2 1 4 4 H 1.48504 * 109.46755 * 275.34068 * 3 2 1 5 5 H 1.48505 * 109.46918 * 35.33609 * 3 2 1 6 6 H 1.48501 * 109.46952 * 155.33914 * 3 2 1 7 7 C 1.40050 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00226 * 341.25365 * 7 2 1 9 9 C 1.41437 * 119.99572 * 161.53726 * 7 2 1 10 10 C 1.41103 * 121.03643 * 330.85054 * 9 7 2 11 11 C 1.37622 * 118.90641 * 179.79622 * 10 9 7 12 12 N 1.32077 * 121.06932 * 0.50472 * 11 10 9 13 13 C 1.32030 * 122.33056 * 359.72778 * 12 11 10 14 14 Br 1.89105 * 119.52236 * 180.02562 * 13 12 11 15 15 C 1.38075 * 120.95403 * 0.02562 * 13 12 11 16 16 Cl 1.73595 * 120.59731 * 179.97438 * 15 13 12 17 17 H 0.97007 * 119.99959 * 359.97438 * 1 2 3 18 18 H 1.08004 * 120.54899 * 0.03633 * 10 9 7 19 19 H 1.08001 * 119.46240 * 180.22892 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3761 2.1116 -1.3941 5 1 1.4998 2.6176 0.8098 6 1 3.5909 1.4102 0.5842 7 6 2.0076 -1.2129 0.0005 8 1 1.5106 -2.1232 0.3015 9 6 3.3674 -1.2445 -0.3874 10 6 3.8817 -0.3120 -1.3131 11 6 5.2127 -0.3803 -1.6563 12 7 6.0027 -1.3052 -1.1418 13 6 5.5687 -2.2026 -0.2760 14 35 6.7698 -3.4914 0.4112 15 6 4.2506 -2.2136 0.1348 16 17 3.6897 -3.3982 1.2731 17 1 -0.4850 0.8401 0.0004 18 1 3.2423 0.4453 -1.7423 19 1 5.6166 0.3313 -2.3612 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238559721.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:19 Heat of formation + Delta-G solvation = -5.263843 kcal Electronic energy + Delta-G solvation = -10229.293624 eV Core-core repulsion = 8010.645468 eV Total energy + Delta-G solvation = -2218.648156 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.56590 -37.17933 -36.14406 -33.59530 -32.79540 -30.32831 -28.08630 -24.03861 -23.29739 -19.69126 -17.97885 -17.33364 -16.59364 -16.15568 -15.29916 -14.97331 -14.65529 -13.68015 -13.20606 -12.87545 -12.73155 -12.68227 -12.04169 -11.84236 -11.70440 -11.32656 -11.01377 -10.32037 -10.14664 -9.58492 -9.10745 -6.84799 0.15875 0.46536 0.48548 1.24585 1.39197 1.46147 1.51893 2.03332 2.42415 3.17277 3.89446 4.25870 4.41251 4.49633 4.88049 4.95916 5.42066 5.66181 6.05262 6.24394 6.48198 7.09274 7.93741 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.039165 B = 0.009359 C = 0.007927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.755972 B = 2991.049929 C = 3531.456361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.057 3.943 3 Si 0.960 3.040 4 H -0.239 1.239 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.436 4.436 8 H 0.080 0.920 9 C 0.097 3.903 10 C -0.281 4.281 11 C 0.129 3.871 12 N -0.554 5.554 13 C 0.150 3.850 14 Br -0.015 7.015 15 C -0.166 4.166 16 Cl -0.067 7.067 17 H 0.305 0.695 18 H 0.132 0.868 19 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 -0.295 -0.106 7.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.165 4.165 3 Si 0.781 3.219 4 H -0.163 1.163 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.098 0.902 9 C 0.088 3.912 10 C -0.303 4.303 11 C -0.024 4.024 12 N -0.271 5.271 13 C -0.064 4.064 14 Br 0.068 6.932 15 C -0.201 4.201 16 Cl -0.039 7.039 17 H 0.117 0.883 18 H 0.150 0.850 19 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 8.593 -0.824 -0.003 8.632 hybrid contribution -1.346 0.538 0.300 1.480 sum 7.247 -0.286 0.297 7.259 Atomic orbital electron populations 1.69622 1.09251 1.32775 1.31159 1.26910 0.95410 1.04279 0.89901 0.85560 0.79446 0.76114 0.80745 1.16318 1.19606 1.18267 1.19589 0.92892 0.96854 1.37138 0.90228 1.17874 0.92826 0.90220 0.90288 1.22148 0.97993 1.05666 1.04492 1.22658 0.89644 0.94109 0.95962 1.67403 1.38273 1.07059 1.14365 1.22436 0.89550 0.96666 0.97727 1.96555 1.61209 1.51167 1.84232 1.21747 0.93136 1.01535 1.03691 1.98242 1.89920 1.56143 1.59585 0.88329 0.85029 0.80058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.70 13.92 21.84 0.30 -38.40 13 2 C 0.06 2.67 5.42 85.30 0.46 3.13 13 3 Si 0.96 36.99 24.54 68.60 1.68 38.68 13 4 H -0.24 -8.26 6.70 99.48 0.67 -7.59 13 5 H -0.27 -9.80 7.11 99.48 0.71 -9.09 13 6 H -0.26 -10.60 6.86 99.48 0.68 -9.91 13 7 C -0.44 -21.98 9.07 23.50 0.21 -21.76 13 8 H 0.08 4.34 7.48 -2.92 -0.02 4.32 13 9 C 0.10 4.63 5.14 -21.08 -0.11 4.52 13 10 C -0.28 -11.91 7.30 22.83 0.17 -11.74 13 11 C 0.13 5.00 11.15 84.51 0.94 5.94 13 12 N -0.55 -23.39 10.29 -191.20 -1.97 -25.35 13 13 C 0.15 6.48 7.16 84.62 0.61 7.08 13 14 Br -0.02 -0.56 32.69 -20.37 -0.67 -1.22 13 15 C -0.17 -7.63 6.40 22.94 0.15 -7.48 13 16 Cl -0.07 -2.85 26.61 -2.72 -0.07 -2.92 13 17 H 0.31 12.91 8.29 -92.70 -0.77 12.15 13 18 H 0.13 5.19 4.77 -2.91 -0.01 5.18 13 19 H 0.18 5.38 8.06 -2.91 -0.02 5.35 13 Total: -1.00 -52.07 208.99 2.94 -49.13 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 1.23 Total: 0.40 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 2.43 Total: -20.31 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -1.66 Total: -63.75 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 1.68 Total: 38.68 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.07 Total: -2.92 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -0.67 Total: -1.22 kcal Total: -52.07 2.94 -49.13 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238559721.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.867 kcal (2) G-P(sol) polarization free energy of solvation -52.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds