Wall clock time and date at job start Mon Mar 30 2020 07:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86797 * 120.00029 * 2 1 4 4 H 1.48506 * 109.47171 * 240.00402 * 3 2 1 5 5 H 1.48497 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47020 * 120.00417 * 3 2 1 7 7 C 1.40049 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99942 * 164.07285 * 7 2 1 9 9 C 1.41450 * 119.99986 * 344.06518 * 7 2 1 10 10 C 1.41028 * 121.02974 * 335.43362 * 9 7 2 11 11 C 1.37837 * 118.86340 * 179.70315 * 10 9 7 12 12 Cl 1.73599 * 119.49466 * 180.25449 * 11 10 9 13 13 N 1.32149 * 121.01198 * 0.27702 * 11 10 9 14 14 C 1.31989 * 122.31749 * 0.02562 * 13 11 10 15 15 C 1.37864 * 121.01003 * 0.02562 * 14 13 11 16 16 Br 1.89102 * 120.57350 * 179.97438 * 15 14 13 17 17 H 0.97003 * 119.99893 * 5.02489 * 1 2 3 18 18 H 1.07997 * 120.56786 * 359.97438 * 10 9 7 19 19 H 1.08005 * 119.49792 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2764 2.7464 0.0006 6 1 3.0951 1.6963 1.2124 7 6 2.0076 -1.2129 -0.0005 8 1 3.0565 -1.2307 -0.2572 9 6 1.3410 -2.4145 0.3352 10 6 0.1844 -2.4032 1.1421 11 6 -0.4331 -3.5998 1.4366 12 17 -1.8617 -3.6044 2.4228 13 7 0.0460 -4.7437 0.9800 14 6 1.1282 -4.8050 0.2269 15 6 1.8169 -3.6626 -0.1213 16 35 3.3664 -3.7650 -1.2004 17 1 -0.4850 0.8369 -0.0736 18 1 -0.2132 -1.4726 1.5191 19 1 1.4802 -5.7650 -0.1211 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238574337.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:03 Heat of formation + Delta-G solvation = -7.217362 kcal Electronic energy + Delta-G solvation = -10135.115872 eV Core-core repulsion = 7916.383005 eV Total energy + Delta-G solvation = -2218.732867 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.35659 -37.37065 -36.19740 -33.31315 -32.11337 -29.92909 -28.01951 -23.91784 -23.14205 -19.72906 -17.77777 -16.96090 -16.37092 -15.96429 -15.05121 -14.71649 -14.49850 -13.42142 -13.15418 -12.91784 -12.72891 -12.19540 -12.09122 -11.95073 -11.57624 -11.27820 -10.92826 -10.12988 -10.09426 -9.38567 -8.84552 -6.76174 0.37438 0.77407 0.99083 1.34619 1.40051 1.52012 1.54340 2.13771 2.55858 3.35635 3.94006 4.57073 4.60574 4.90086 5.05635 5.18873 5.51334 5.80895 6.20325 6.49116 6.57904 7.25194 8.07122 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.015733 B = 0.013673 C = 0.007456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.226199 B = 2047.385445 C = 3754.503029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.445 4.445 8 H 0.103 0.897 9 C 0.122 3.878 10 C -0.205 4.205 11 C 0.170 3.830 12 Cl -0.062 7.062 13 N -0.585 5.585 14 C 0.161 3.839 15 C -0.262 4.262 16 Br -0.057 7.057 17 H 0.301 0.699 18 H 0.132 0.868 19 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 -0.171 -1.189 4.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.474 4.474 8 H 0.121 0.879 9 C 0.112 3.888 10 C -0.230 4.230 11 C 0.015 3.985 12 Cl -0.033 7.033 13 N -0.303 5.303 14 C 0.003 3.997 15 C -0.347 4.347 16 Br 0.027 6.973 17 H 0.112 0.888 18 H 0.150 0.850 19 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.014 -0.837 -1.201 4.273 hybrid contribution -0.073 1.281 0.106 1.287 sum 3.941 0.443 -1.095 4.114 Atomic orbital electron populations 1.69741 1.09317 1.32284 1.30260 1.26981 0.95549 1.05040 0.90567 0.85132 0.78894 0.74637 0.80662 1.17799 1.18808 1.17967 1.20156 0.98762 0.90611 1.37825 0.87868 1.17864 0.90393 0.92494 0.88025 1.21910 1.00262 0.96604 1.04209 1.21440 0.90344 0.90891 0.95858 1.98285 1.37860 1.98747 1.68457 1.66840 1.16472 1.28010 1.18993 1.22229 0.88751 0.97092 0.91609 1.22784 1.01890 0.97141 1.12858 1.96290 1.34826 1.98577 1.67634 0.88776 0.85028 0.81704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.89 10.91 21.84 0.24 -36.65 13 2 C 0.04 1.75 5.21 85.30 0.44 2.20 13 3 Si 0.99 33.53 29.59 68.60 2.03 35.56 13 4 H -0.25 -8.38 7.11 99.48 0.71 -7.68 13 5 H -0.26 -8.47 7.11 99.48 0.71 -7.76 13 6 H -0.26 -8.55 7.11 99.48 0.71 -7.84 13 7 C -0.44 -21.21 8.56 23.50 0.20 -21.01 13 8 H 0.10 4.71 6.98 -2.91 -0.02 4.69 13 9 C 0.12 6.05 5.60 -21.08 -0.12 5.93 13 10 C -0.21 -10.24 8.54 22.86 0.20 -10.04 13 11 C 0.17 8.11 7.26 84.55 0.61 8.72 13 12 Cl -0.06 -2.51 29.10 -2.72 -0.08 -2.59 13 13 N -0.58 -27.47 10.31 -187.15 -1.93 -29.40 13 14 C 0.16 7.02 10.93 84.58 0.92 7.94 13 15 C -0.26 -11.94 6.31 22.90 0.14 -11.80 13 16 Br -0.06 -2.16 32.27 -20.37 -0.66 -2.81 13 17 H 0.30 12.52 8.30 -92.71 -0.77 11.75 13 18 H 0.13 6.71 6.22 -2.91 -0.02 6.70 13 19 H 0.17 6.08 8.06 -2.91 -0.02 6.06 13 Total: -1.00 -51.33 215.48 3.30 -48.04 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.29 Total: 5.91 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 2.41 Total: -18.06 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -1.69 Total: -66.05 kcal Atomic # 14 Polarization: 33.53 SS G_CDS: 2.03 Total: 35.56 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.08 Total: -2.59 kcal Atomic # 35 Polarization: -2.16 SS G_CDS: -0.66 Total: -2.81 kcal Total: -51.33 3.30 -48.04 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238574337.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.819 kcal (2) G-P(sol) polarization free energy of solvation -51.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds