Wall clock time and date at job start Mon Mar 30 2020 07:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86802 * 119.99639 * 2 1 4 4 H 1.48500 * 109.47237 * 240.00209 * 3 2 1 5 5 H 1.48501 * 109.47388 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46976 * 120.00598 * 3 2 1 7 7 C 1.39940 * 120.00411 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 197.52157 * 7 2 1 9 9 C 1.41372 * 119.99878 * 17.52397 * 7 2 1 10 10 C 1.40756 * 120.64245 * 203.45023 * 9 7 2 11 11 N 1.31468 * 120.44176 * 180.02562 * 10 9 7 12 12 C 1.32160 * 121.97523 * 0.02562 * 11 10 9 13 13 Br 1.89098 * 119.36130 * 179.97438 * 12 11 10 14 14 C 1.38863 * 121.27859 * 359.97438 * 12 11 10 15 15 Cl 1.73594 * 120.30655 * 180.02562 * 14 12 11 16 16 C 1.38085 * 119.39019 * 0.02562 * 14 12 11 17 17 H 0.96997 * 120.00531 * 359.97438 * 1 2 3 18 18 H 1.08001 * 119.77847 * 359.74521 * 10 9 7 19 19 H 1.08000 * 120.90099 * 180.02562 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0081 -1.2119 -0.0005 8 1 3.0505 -1.2336 0.2810 9 6 1.3505 -2.4076 -0.3697 10 6 1.8310 -3.6556 0.0695 11 7 1.2166 -4.7652 -0.2767 12 6 0.1382 -4.7591 -1.0405 13 35 -0.6863 -6.3994 -1.4938 14 6 -0.4013 -3.5714 -1.5166 15 17 -1.8193 -3.5927 -2.5178 16 6 0.2005 -2.3733 -1.1864 17 1 -0.4851 0.8400 0.0004 18 1 2.7128 -3.7023 0.6912 19 1 -0.1987 -1.4353 -1.5430 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238574746.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:45 Heat of formation + Delta-G solvation = -8.660245 kcal Electronic energy + Delta-G solvation = -10081.131635 eV Core-core repulsion = 7862.336200 eV Total energy + Delta-G solvation = -2218.795435 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.36682 -37.39174 -36.20686 -32.92444 -32.41327 -30.78990 -27.32639 -24.04598 -23.29862 -19.53236 -17.72319 -17.24668 -16.63116 -16.10258 -15.10056 -14.67802 -13.82116 -13.53087 -13.38298 -12.90845 -12.79960 -12.55279 -12.12599 -11.90300 -11.67538 -11.16619 -10.90575 -10.34933 -10.16223 -9.55072 -8.88254 -6.64264 0.34353 0.73388 0.81938 1.28287 1.41180 1.50703 1.55624 2.13641 2.49142 3.39061 4.10295 4.44183 4.57857 4.86290 5.02822 5.14607 5.61680 5.64415 6.20634 6.46612 6.52009 7.26860 8.04338 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.048080 B = 0.007273 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.217122 B = 3849.150180 C = 4356.487076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.035 3.965 3 Si 0.994 3.006 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.441 4.441 8 H 0.107 0.893 9 C 0.053 3.947 10 C -0.018 4.018 11 N -0.438 5.438 12 C -0.040 4.040 13 Br -0.035 7.035 14 C -0.022 4.022 15 Cl -0.069 7.069 16 C -0.153 4.153 17 H 0.301 0.699 18 H 0.161 0.839 19 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 -1.571 -2.277 2.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.468 4.468 8 H 0.125 0.875 9 C 0.047 3.953 10 C -0.185 4.185 11 N -0.146 5.146 12 C -0.253 4.253 13 Br 0.048 6.952 14 C -0.053 4.053 15 Cl -0.040 7.040 16 C -0.179 4.179 17 H 0.113 0.887 18 H 0.178 0.822 19 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.920 -2.861 -2.251 3.754 hybrid contribution -0.195 1.649 -0.201 1.672 sum -1.115 -1.212 -2.451 2.953 Atomic orbital electron populations 1.69792 1.09487 1.32343 1.30232 1.27045 0.95532 1.05361 0.90623 0.85037 0.78708 0.74288 0.80660 1.18029 1.19221 1.17584 1.20107 0.99188 0.90951 1.36563 0.87495 1.18855 0.91690 0.94950 0.89756 1.22934 1.03318 0.86895 1.05310 1.66792 1.05983 1.32521 1.09332 1.21711 1.01559 0.89502 1.12527 1.96390 1.78841 1.27737 1.92247 1.21574 0.91218 0.94720 0.97828 1.98274 1.38873 1.98836 1.68024 1.21611 0.99525 0.95510 1.01291 0.88730 0.82216 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.25 10.91 21.83 0.24 -36.01 13 2 C 0.03 1.48 5.18 85.25 0.44 1.92 13 3 Si 0.99 31.95 29.59 68.60 2.03 33.98 13 4 H -0.26 -8.12 7.11 99.48 0.71 -7.41 13 5 H -0.27 -8.29 7.11 99.48 0.71 -7.58 13 6 H -0.25 -7.77 7.11 99.48 0.71 -7.06 13 7 C -0.44 -20.12 9.08 23.45 0.21 -19.91 13 8 H 0.11 4.45 7.90 -2.91 -0.02 4.42 13 9 C 0.05 2.60 5.59 -21.19 -0.12 2.48 13 10 C -0.02 -0.83 10.97 85.36 0.94 0.10 13 11 N -0.44 -21.02 10.29 -188.41 -1.94 -22.96 13 12 C -0.04 -1.85 7.18 84.79 0.61 -1.24 13 13 Br -0.03 -1.35 32.67 -20.37 -0.67 -2.02 13 14 C -0.02 -1.03 6.33 22.38 0.14 -0.88 13 15 Cl -0.07 -2.75 27.73 -2.72 -0.08 -2.82 13 16 C -0.15 -7.53 8.61 22.93 0.20 -7.33 13 17 H 0.30 12.28 8.30 -92.71 -0.77 11.51 13 18 H 0.16 6.59 8.06 -2.91 -0.02 6.57 13 19 H 0.14 6.76 6.19 -2.91 -0.02 6.74 13 Total: -1.00 -50.81 215.91 3.30 -47.51 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.29 Total: 7.18 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 2.42 Total: -24.87 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -1.70 Total: -58.97 kcal Atomic # 14 Polarization: 31.95 SS G_CDS: 2.03 Total: 33.98 kcal Atomic # 17 Polarization: -2.75 SS G_CDS: -0.08 Total: -2.82 kcal Atomic # 35 Polarization: -1.35 SS G_CDS: -0.67 Total: -2.02 kcal Total: -50.81 3.30 -47.51 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238574746.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.850 kcal (2) G-P(sol) polarization free energy of solvation -50.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds