Wall clock time and date at job start Mon Mar 30 2020 07:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 120.00018 * 2 1 4 4 H 1.48499 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47033 * 299.99951 * 3 2 1 6 6 H 1.48497 * 109.47033 * 60.00102 * 3 2 1 7 7 C 1.40038 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00534 * 179.97438 * 7 2 1 9 9 C 1.41313 * 119.99780 * 0.02562 * 7 2 1 10 10 N 1.33670 * 119.82979 * 0.02562 * 9 7 2 11 11 C 1.31476 * 121.50628 * 180.02562 * 10 9 7 12 12 Cl 1.73601 * 119.49589 * 180.02562 * 11 10 9 13 13 C 1.39021 * 121.01134 * 359.97438 * 11 10 9 14 14 C 1.38802 * 119.56248 * 359.73306 * 13 11 10 15 15 C 1.38376 * 118.59614 * 0.51049 * 14 13 11 16 16 Br 1.89100 * 120.50939 * 179.78440 * 15 14 13 17 17 H 0.97000 * 119.99835 * 359.97438 * 1 2 3 18 18 H 1.07999 * 120.22247 * 180.02562 * 13 11 10 19 19 H 1.07994 * 120.70104 * 180.29706 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2128 0.0001 9 6 1.3010 -2.4365 0.0005 10 7 -0.0357 -2.4326 -0.0005 11 6 -0.7261 -3.5515 0.0000 12 17 -2.4608 -3.4854 -0.0021 13 6 -0.0882 -4.7867 0.0010 14 6 1.2987 -4.8412 -0.0040 15 6 2.0083 -3.6532 0.0008 16 35 3.8992 -3.6644 0.0005 17 1 -0.4850 0.8401 0.0004 18 1 -0.6679 -5.6979 0.0010 19 1 1.8132 -5.7907 -0.0081 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238581935.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:30 Heat of formation + Delta-G solvation = 3.357020 kcal Electronic energy + Delta-G solvation = -10166.007222 eV Core-core repulsion = 7947.732895 eV Total energy + Delta-G solvation = -2218.274327 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.21892 -37.29563 -35.64151 -33.29251 -32.33573 -30.14200 -27.65676 -23.79878 -23.12599 -19.62440 -17.91875 -16.58873 -16.47247 -15.86984 -14.94681 -14.70141 -14.08592 -13.09823 -13.05123 -12.89135 -12.68568 -12.56552 -11.98219 -11.85325 -11.58004 -11.19550 -10.75557 -10.21218 -9.78121 -9.40717 -8.47612 -6.71166 0.46874 0.87240 1.05247 1.39450 1.40740 1.49049 1.56781 2.18193 2.65738 3.61304 4.18479 4.48702 4.58771 4.77051 5.14101 5.26878 5.43067 5.77302 6.11102 6.43344 6.68603 7.74640 8.27017 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.013972 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.150165 B = 2003.491085 C = 3734.798505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.023 3.977 3 Si 0.984 3.016 4 H -0.249 1.249 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.431 4.431 8 H 0.110 0.890 9 C 0.250 3.750 10 N -0.507 5.507 11 C 0.206 3.794 12 Cl -0.066 7.066 13 C -0.298 4.298 14 C -0.007 4.007 15 C -0.265 4.265 16 Br -0.062 7.062 17 H 0.285 0.715 18 H 0.143 0.857 19 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -3.726 -0.005 5.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.201 4.201 3 Si 0.804 3.196 4 H -0.172 1.172 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.461 4.461 8 H 0.127 0.873 9 C 0.126 3.874 10 N -0.223 5.223 11 C 0.031 3.969 12 Cl -0.038 7.038 13 C -0.324 4.324 14 C -0.033 4.033 15 C -0.348 4.348 16 Br 0.022 6.978 17 H 0.096 0.904 18 H 0.160 0.840 19 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.240 -2.751 -0.008 5.054 hybrid contribution -0.234 -0.144 -0.002 0.275 sum 4.006 -2.895 -0.010 4.943 Atomic orbital electron populations 1.70202 1.09015 1.29933 1.26497 1.27091 0.95694 1.04867 0.92473 0.85102 0.79797 0.75677 0.79056 1.17190 1.18889 1.18876 1.20402 0.95944 0.89630 1.40104 0.87256 1.18557 0.86525 0.92557 0.89779 1.68015 1.07380 1.26963 1.19907 1.22113 0.86396 0.91515 0.96881 1.98288 1.10024 1.98844 1.96685 1.21249 0.94259 0.96361 1.20482 1.21159 0.92966 0.96780 0.92351 1.22617 0.89750 0.96805 1.25667 1.96270 1.04221 1.99018 1.98311 0.90384 0.83971 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.04 11.46 21.84 0.25 -37.79 13 2 C 0.02 1.12 5.50 85.29 0.47 1.59 13 3 Si 0.98 36.21 29.56 68.60 2.03 38.24 13 4 H -0.25 -8.79 7.11 99.48 0.71 -8.08 13 5 H -0.26 -9.39 7.11 99.48 0.71 -8.68 13 6 H -0.26 -9.38 7.11 99.48 0.71 -8.68 13 7 C -0.43 -22.01 8.79 23.46 0.21 -21.80 13 8 H 0.11 5.24 6.37 -2.91 -0.02 5.23 13 9 C 0.25 13.11 6.55 40.23 0.26 13.37 13 10 N -0.51 -27.31 7.84 -179.92 -1.41 -28.72 13 11 C 0.21 9.75 7.28 84.93 0.62 10.37 13 12 Cl -0.07 -2.72 29.10 -2.72 -0.08 -2.80 13 13 C -0.30 -12.37 9.89 22.59 0.22 -12.15 13 14 C -0.01 -0.27 9.92 22.44 0.22 -0.05 13 15 C -0.26 -12.13 6.30 22.91 0.14 -11.99 13 16 Br -0.06 -2.36 31.91 -20.37 -0.65 -3.01 13 17 H 0.29 13.28 8.29 -92.71 -0.77 12.51 13 18 H 0.14 4.94 8.06 -2.91 -0.02 4.92 13 19 H 0.15 4.95 8.06 -2.91 -0.02 4.92 13 Total: -1.00 -56.18 216.21 3.57 -52.61 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 1.29 Total: 2.13 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 2.15 Total: -20.66 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -1.16 Total: -66.51 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.08 Total: -2.80 kcal Atomic # 35 Polarization: -2.36 SS G_CDS: -0.65 Total: -3.01 kcal Total: -56.18 3.57 -52.61 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238581935.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.963 kcal (2) G-P(sol) polarization free energy of solvation -56.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds