Wall clock time and date at job start Mon Mar 30 2020 07:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38182 * 120.00395 * 264.99560 * 12 9 7 14 14 C 1.38315 * 120.05007 * 180.02562 * 13 12 9 15 15 Cl 1.73604 * 119.96271 * 180.02562 * 14 13 12 16 16 C 1.38503 * 120.07739 * 359.97438 * 14 13 12 17 17 Cl 1.73597 * 119.99439 * 180.02562 * 16 14 13 18 18 C 1.38237 * 120.01703 * 0.02562 * 16 14 13 19 19 C 1.38697 * 120.01241 * 84.72770 * 12 9 7 20 20 O 1.35927 * 120.03324 * 359.97438 * 19 12 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 23 23 H 1.00904 * 110.99882 * 183.95319 * 11 9 7 24 24 H 1.07999 * 119.97776 * 0.02914 * 13 12 9 25 25 H 1.07996 * 120.02940 * 180.02562 * 18 16 14 26 26 H 0.96701 * 114.00207 * 90.00369 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 0.4065 -2.5716 -1.2052 12 6 2.2302 -3.6447 -0.0104 13 6 2.6000 -4.2324 -1.2050 14 6 3.4983 -5.2841 -1.2107 15 17 3.9618 -6.0204 -2.7130 16 6 4.0293 -5.7498 -0.0193 17 17 5.1572 -7.0695 -0.0290 18 6 3.6615 -5.1641 1.1776 19 6 2.7648 -4.1056 1.1836 20 8 2.4063 -3.5243 2.3588 21 1 -0.4850 0.8401 -0.0004 22 1 0.9645 -2.5165 -2.0440 23 1 -0.1576 -3.4083 -1.2004 24 1 2.1873 -3.8703 -2.1351 25 1 4.0757 -5.5268 2.1066 26 1 1.6338 -3.9278 2.7777 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238587622.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:23 Heat of formation + Delta-G solvation = -29.862359 kcal Electronic energy + Delta-G solvation = -15143.082483 eV Core-core repulsion = 12273.628436 eV Total energy + Delta-G solvation = -2869.454047 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.006 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.73274 -37.08077 -36.38733 -35.81988 -34.50702 -31.76447 -29.77688 -29.00588 -26.12281 -23.38349 -22.31324 -20.34998 -18.19079 -16.64893 -16.32325 -16.05076 -15.15110 -14.59048 -14.24381 -13.94537 -13.56074 -13.49460 -12.76108 -12.32051 -12.16275 -11.75892 -11.32123 -11.02191 -10.93984 -10.84491 -10.70891 -10.62811 -10.33670 -9.84555 -9.38899 -8.59323 -8.47381 -8.02374 -7.27816 -5.93350 -4.07622 1.21222 1.35874 1.99910 2.36978 3.34554 3.38550 3.41814 3.66879 4.46416 4.54529 4.86138 5.27509 5.37110 5.47359 5.69477 5.91581 6.02424 6.15067 6.35053 6.62946 6.84608 7.28122 7.84665 7.99751 8.08287 8.48685 8.84809 9.03867 9.60433 11.11039 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.027415 B = 0.006298 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.108467 B = 4444.487575 C = 4796.516787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.086 3.914 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.262 3.738 10 H 0.057 0.943 11 N -0.811 5.811 12 C -0.080 4.080 13 C -0.097 4.097 14 C -0.035 4.035 15 Cl -0.065 7.065 16 C -0.039 4.039 17 Cl -0.066 7.066 18 C -0.131 4.131 19 C 0.125 3.875 20 O -0.475 6.475 21 H 0.257 0.743 22 H 0.319 0.681 23 H 0.300 0.700 24 H 0.141 0.859 25 H 0.140 0.860 26 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.824 -12.235 0.005 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.121 4.121 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.071 0.929 9 C 0.152 3.848 10 H 0.074 0.926 11 N -0.337 5.337 12 C -0.084 4.084 13 C -0.116 4.116 14 C -0.062 4.062 15 Cl -0.036 7.036 16 C -0.066 4.066 17 Cl -0.037 7.037 18 C -0.151 4.151 19 C 0.079 3.921 20 O -0.284 6.284 21 H 0.067 0.933 22 H 0.133 0.867 23 H 0.110 0.890 24 H 0.159 0.841 25 H 0.157 0.843 26 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.907 -11.239 0.023 12.263 hybrid contribution 0.913 -0.446 -0.242 1.045 sum 5.820 -11.685 -0.218 13.056 Atomic orbital electron populations 1.70078 1.05643 1.25976 1.46480 1.24898 0.94675 0.98537 0.94035 0.86769 0.79721 0.83396 0.78652 1.20320 1.21306 1.20252 1.20630 0.92098 0.88891 1.54680 0.92928 1.18168 0.87180 0.88245 0.91203 0.92575 1.59162 1.28033 1.42150 1.04376 1.22392 0.97960 0.97115 0.90898 1.20808 0.96982 0.94262 0.99583 1.20711 1.01226 0.98422 0.85884 1.98351 1.91461 1.82063 1.31741 1.20294 0.98274 0.94868 0.93198 1.98347 1.60101 1.46363 1.98886 1.21218 1.00488 0.96552 0.96823 1.18187 0.95893 0.91442 0.86544 1.84934 1.51100 1.58775 1.33588 0.93299 0.86726 0.88952 0.84119 0.84268 0.75842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.78 12.76 55.43 0.71 -23.08 15 2 C 0.09 2.32 5.39 -17.82 -0.10 2.22 15 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.52 -13.88 8.71 -34.44 -0.30 -14.18 15 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 15 9 C 0.26 5.99 2.57 -70.02 -0.18 5.81 15 10 H 0.06 1.39 7.70 -51.93 -0.40 0.99 15 11 N -0.81 -17.53 8.12 -6.65 -0.05 -17.58 15 12 C -0.08 -1.54 5.00 -104.47 -0.52 -2.07 15 13 C -0.10 -1.69 9.05 -39.57 -0.36 -2.05 15 14 C -0.03 -0.56 6.32 -39.46 -0.25 -0.81 15 15 Cl -0.07 -0.94 27.95 -51.86 -1.45 -2.39 15 16 C -0.04 -0.60 6.32 -39.48 -0.25 -0.85 15 17 Cl -0.07 -0.90 27.95 -51.86 -1.45 -2.35 15 18 C -0.13 -2.03 9.77 -39.40 -0.38 -2.42 15 19 C 0.13 2.22 6.68 -39.23 -0.26 1.95 15 20 O -0.47 -8.15 12.64 -19.51 -0.25 -8.40 15 21 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 22 H 0.32 6.60 7.20 -39.29 -0.28 6.32 15 23 H 0.30 5.67 9.06 -39.29 -0.36 5.31 15 24 H 0.14 2.35 6.29 -52.49 -0.33 2.02 15 25 H 0.14 1.84 8.06 -52.49 -0.42 1.42 15 26 H 0.39 4.65 9.06 45.56 0.41 5.06 15 LS Contribution 263.52 15.07 3.97 3.97 Total: -1.00 -29.03 263.52 -7.06 -36.09 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -0.92 Total: 10.03 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.60 Total: -12.40 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.65 Total: -40.66 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.25 Total: -8.40 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -2.90 Total: -4.73 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.03 -7.06 -36.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238587622.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.231 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds