Wall clock time and date at job start Mon Mar 30 2020 07:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38182 * 120.00395 * 264.99560 * 12 9 7 14 14 C 1.38315 * 120.05007 * 180.02562 * 13 12 9 15 15 Cl 1.73604 * 119.96271 * 180.02562 * 14 13 12 16 16 C 1.38503 * 120.07739 * 359.97438 * 14 13 12 17 17 Cl 1.73597 * 119.99439 * 180.02562 * 16 14 13 18 18 C 1.38237 * 120.01703 * 0.02562 * 16 14 13 19 19 C 1.38697 * 120.01241 * 84.72770 * 12 9 7 20 20 O 1.35927 * 120.03324 * 359.97438 * 19 12 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 23 23 H 1.00904 * 110.99882 * 183.95319 * 11 9 7 24 24 H 1.07999 * 119.97776 * 0.02914 * 13 12 9 25 25 H 1.07996 * 120.02940 * 180.02562 * 18 16 14 26 26 H 0.96701 * 114.00207 * 90.00369 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 0.4065 -2.5716 -1.2052 12 6 2.2302 -3.6447 -0.0104 13 6 2.6000 -4.2324 -1.2050 14 6 3.4983 -5.2841 -1.2107 15 17 3.9618 -6.0204 -2.7130 16 6 4.0293 -5.7498 -0.0193 17 17 5.1572 -7.0695 -0.0290 18 6 3.6615 -5.1641 1.1776 19 6 2.7648 -4.1056 1.1836 20 8 2.4063 -3.5243 2.3588 21 1 -0.4850 0.8401 -0.0004 22 1 0.9645 -2.5165 -2.0440 23 1 -0.1576 -3.4083 -1.2004 24 1 2.1873 -3.8703 -2.1351 25 1 4.0757 -5.5268 2.1066 26 1 1.6338 -3.9278 2.7777 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238587622.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:23 Heat of formation + Delta-G solvation = -50.306690 kcal Electronic energy + Delta-G solvation = -15143.969016 eV Core-core repulsion = 12273.628436 eV Total energy + Delta-G solvation = -2870.340580 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.006 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.07882 -38.33136 -37.58586 -37.19702 -36.10733 -33.67695 -31.14591 -30.44256 -28.00644 -24.99508 -23.64767 -21.93620 -19.51237 -18.52590 -17.70037 -17.44122 -16.68242 -16.29752 -15.93791 -15.33568 -14.96888 -14.75657 -14.38238 -13.85849 -13.72793 -13.06375 -12.91526 -12.74869 -12.64302 -12.15912 -12.13877 -11.96230 -11.88620 -11.46915 -11.24287 -10.53297 -9.90507 -9.41219 -8.95387 -7.97505 -6.16647 -0.09758 0.04995 0.78274 1.12576 1.44940 1.45564 1.52482 2.31406 2.52125 3.26840 3.28551 3.61538 3.98222 4.13530 4.33602 4.49090 4.62469 4.76158 4.94691 5.19896 5.47319 5.55884 5.75994 6.16276 6.63748 6.86234 7.07533 7.25097 7.54144 9.05359 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.027415 B = 0.006298 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.108467 B = 4444.487575 C = 4796.516787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.038 0.962 9 C 0.270 3.730 10 H 0.030 0.970 11 N -0.821 5.821 12 C -0.105 4.105 13 C -0.095 4.095 14 C -0.040 4.040 15 Cl -0.048 7.048 16 C -0.035 4.035 17 Cl -0.044 7.044 18 C -0.123 4.123 19 C 0.121 3.879 20 O -0.492 6.492 21 H 0.256 0.744 22 H 0.324 0.676 23 H 0.316 0.684 24 H 0.143 0.857 25 H 0.165 0.835 26 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.998 -13.293 -0.064 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.056 0.944 9 C 0.160 3.840 10 H 0.047 0.953 11 N -0.350 5.350 12 C -0.109 4.109 13 C -0.115 4.115 14 C -0.068 4.068 15 Cl -0.019 7.019 16 C -0.063 4.063 17 Cl -0.015 7.015 18 C -0.142 4.142 19 C 0.075 3.925 20 O -0.304 6.304 21 H 0.065 0.935 22 H 0.138 0.862 23 H 0.128 0.872 24 H 0.161 0.839 25 H 0.182 0.818 26 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 6.080 -12.316 -0.042 13.735 hybrid contribution 0.608 -0.251 -0.220 0.693 sum 6.688 -12.567 -0.262 14.239 Atomic orbital electron populations 1.70180 1.06680 1.26386 1.47891 1.25526 0.95378 1.01285 0.94078 0.85923 0.78627 0.80299 0.78465 1.20080 1.20921 1.20242 1.20905 0.91622 0.90903 1.53852 0.94417 1.17723 0.87379 0.88424 0.90506 0.95260 1.58945 1.28419 1.43410 1.04184 1.22016 0.98923 0.97393 0.92528 1.20766 0.97197 0.94517 0.98982 1.20723 1.00944 0.98181 0.86934 1.98356 1.91224 1.81630 1.30730 1.20443 0.97894 0.94966 0.92954 1.98359 1.59135 1.45132 1.98843 1.21365 0.99419 0.95506 0.97910 1.18289 0.96176 0.91891 0.86110 1.84864 1.52329 1.59692 1.33526 0.93532 0.86215 0.87245 0.83937 0.81755 0.73560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.69 12.76 21.45 0.27 -49.42 15 2 C 0.04 2.25 5.39 84.66 0.46 2.71 15 3 Si 0.94 43.54 29.54 68.60 2.03 45.57 15 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 7 C -0.53 -28.59 8.71 25.60 0.22 -28.37 15 8 H 0.04 2.08 7.74 -2.91 -0.02 2.06 15 9 C 0.27 12.50 2.57 43.42 0.11 12.61 15 10 H 0.03 1.50 7.70 -2.38 -0.02 1.48 15 11 N -0.82 -35.76 8.12 -174.95 -1.42 -37.18 15 12 C -0.11 -4.02 5.00 -19.77 -0.10 -4.12 15 13 C -0.10 -3.24 9.05 22.27 0.20 -3.04 15 14 C -0.04 -1.22 6.32 22.35 0.14 -1.08 15 15 Cl -0.05 -1.29 27.95 -2.72 -0.08 -1.37 15 16 C -0.03 -1.00 6.32 22.33 0.14 -0.86 15 17 Cl -0.04 -1.06 27.95 -2.72 -0.08 -1.14 15 18 C -0.12 -3.52 9.77 22.39 0.22 -3.30 15 19 C 0.12 4.17 6.68 22.50 0.15 4.32 15 20 O -0.49 -16.60 12.64 -92.73 -1.17 -17.78 15 21 H 0.26 13.99 8.31 -92.70 -0.77 13.22 15 22 H 0.32 13.43 7.20 -89.69 -0.65 12.78 15 23 H 0.32 11.94 9.06 -89.69 -0.81 11.13 15 24 H 0.14 4.68 6.29 -2.91 -0.02 4.66 15 25 H 0.16 3.83 8.06 -2.91 -0.02 3.81 15 26 H 0.41 9.57 9.06 -74.06 -0.67 8.90 15 Total: -1.00 -60.63 263.52 0.24 -60.39 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.86 Total: 22.05 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 1.54 Total: -21.13 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -1.15 Total: -86.59 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.17 Total: -17.78 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.15 Total: -2.51 kcal Total: -60.63 0.24 -60.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238587622.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.087 kcal (2) G-P(sol) polarization free energy of solvation -60.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds