Wall clock time and date at job start Mon Mar 30 2020 07:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86800 * 119.99837 * 2 1 4 4 H 1.48504 * 109.46970 * 270.00047 * 3 2 1 5 5 H 1.48503 * 109.47257 * 29.99913 * 3 2 1 6 6 H 1.48498 * 109.47211 * 150.00215 * 3 2 1 7 7 C 1.40031 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99707 * 179.97438 * 7 2 1 9 9 C 1.41330 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.40678 * 119.80287 * 180.02562 * 9 7 2 11 11 C 1.38102 * 119.02135 * 179.72119 * 10 9 7 12 12 C 1.39073 * 118.59707 * 0.51589 * 11 10 9 13 13 Cl 1.73599 * 120.24653 * 179.75669 * 12 11 10 14 14 C 1.39077 * 119.51031 * 359.47514 * 12 11 10 15 15 Br 1.89102 * 119.51624 * 180.27570 * 14 12 11 16 16 N 1.31462 * 120.96504 * 0.26064 * 14 12 11 17 17 H 0.97001 * 119.99780 * 359.97438 * 1 2 3 18 18 H 1.07997 * 120.49215 * 359.96831 * 10 9 7 19 19 H 1.07995 * 120.70538 * 180.26896 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4402 0.7000 7 6 2.0077 -1.2127 0.0005 8 1 3.0877 -1.2126 0.0001 9 6 1.3011 -2.4367 0.0005 10 6 2.0087 -3.6525 0.0016 11 6 1.3020 -4.8390 0.0075 12 6 -0.0878 -4.7861 0.0011 13 17 -1.0187 -6.2514 0.0017 14 6 -0.7263 -3.5505 0.0002 15 35 -2.6159 -3.4784 -0.0006 16 7 -0.0354 -2.4321 0.0001 17 1 -0.4850 0.8401 0.0004 18 1 3.0886 -3.6581 0.0020 19 1 1.8175 -5.7879 0.0128 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238591217.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:54 Heat of formation + Delta-G solvation = 16.422955 kcal Electronic energy + Delta-G solvation = -10107.585412 eV Core-core repulsion = 7889.877666 eV Total energy + Delta-G solvation = -2217.707746 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.44588 -35.48574 -33.82551 -31.47642 -30.46941 -28.84796 -25.76736 -21.99506 -21.42640 -17.81053 -15.87790 -15.31032 -14.77318 -14.16570 -13.18266 -12.85820 -12.34367 -11.51781 -11.49709 -11.22770 -10.90215 -10.83234 -10.38224 -10.21794 -10.08240 -9.39763 -9.15830 -8.42039 -8.02114 -7.71772 -6.71485 -4.83136 2.23937 2.49244 2.59566 2.96607 2.97729 3.00625 3.31365 3.75788 4.39689 5.46188 5.78656 6.25646 6.30168 6.49339 6.89721 7.02305 7.12315 7.48549 7.84824 8.27308 8.51587 9.53809 10.00585 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.033391 B = 0.009120 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.358410 B = 3069.421431 C = 3897.936954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.698 5.698 2 C 0.061 3.939 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.407 4.407 8 H 0.093 0.907 9 C 0.251 3.749 10 C -0.254 4.254 11 C -0.040 4.040 12 C -0.206 4.206 13 Cl -0.106 7.106 14 C 0.187 3.813 15 Br -0.056 7.056 16 N -0.453 5.453 17 H 0.281 0.719 18 H 0.114 0.886 19 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 -3.104 0.006 3.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.167 4.167 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.437 4.437 8 H 0.111 0.889 9 C 0.127 3.873 10 C -0.278 4.278 11 C -0.064 4.064 12 C -0.241 4.241 13 Cl -0.079 7.079 14 C -0.040 4.040 15 Br 0.028 6.972 16 N -0.167 5.167 17 H 0.092 0.908 18 H 0.132 0.868 19 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.950 -2.198 0.010 3.679 hybrid contribution 1.114 -0.218 -0.003 1.135 sum -1.836 -2.416 0.007 3.035 Atomic orbital electron populations 1.70092 1.07309 1.28853 1.25487 1.26198 0.95089 1.01649 0.93752 0.86187 0.80391 0.80083 0.79509 1.19113 1.19811 1.18282 1.19773 0.94713 0.89068 1.40104 0.88888 1.18568 0.86965 0.92547 0.89228 1.21806 0.99411 0.92373 1.14210 1.20732 0.90991 0.98043 0.96669 1.20956 0.91884 0.84892 1.26415 1.98230 1.74205 1.37393 1.98040 1.22468 0.91344 0.90079 1.00114 1.96502 1.04039 1.99163 1.97544 1.68514 1.07634 1.23096 1.17412 0.90788 0.86756 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.63 11.46 55.55 0.64 -16.99 13 2 C 0.06 1.45 5.50 -17.34 -0.10 1.35 13 3 Si 0.92 17.29 29.56 -169.99 -5.02 12.26 13 4 H -0.27 -4.99 7.11 56.52 0.40 -4.58 13 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 13 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 13 7 C -0.41 -10.04 9.14 -37.73 -0.34 -10.38 13 8 H 0.09 2.09 7.85 -52.49 -0.41 1.68 13 9 C 0.25 6.46 6.55 -84.98 -0.56 5.90 13 10 C -0.25 -5.77 9.83 -38.71 -0.38 -6.15 13 11 C -0.04 -0.85 9.96 -39.32 -0.39 -1.24 13 12 C -0.21 -4.64 6.37 -38.96 -0.25 -4.89 13 13 Cl -0.11 -2.07 27.75 -51.86 -1.44 -3.51 13 14 C 0.19 4.57 7.17 -17.40 -0.12 4.45 13 15 Br -0.06 -1.18 32.69 -68.01 -2.22 -3.41 13 16 N -0.45 -12.06 7.82 -9.49 -0.07 -12.13 13 17 H 0.28 6.42 8.29 -40.82 -0.34 6.08 13 18 H 0.11 2.29 8.06 -52.49 -0.42 1.87 13 19 H 0.12 2.11 8.06 -52.49 -0.42 1.69 13 LS Contribution 217.38 15.07 3.28 3.28 Total: -1.00 -26.42 217.38 -7.38 -33.80 By element: Atomic # 1 Polarization: -1.95 SS G_CDS: -0.39 Total: -2.34 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.14 Total: -10.96 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: 0.56 Total: -29.12 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.02 Total: 12.26 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -1.44 Total: -3.51 kcal Atomic # 35 Polarization: -1.18 SS G_CDS: -2.22 Total: -3.41 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -26.42 -7.38 -33.80 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238591217.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.223 kcal (2) G-P(sol) polarization free energy of solvation -26.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds