Wall clock time and date at job start Mon Mar 30 2020 07:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86800 * 119.99837 * 2 1 4 4 H 1.48504 * 109.46970 * 270.00047 * 3 2 1 5 5 H 1.48503 * 109.47257 * 29.99913 * 3 2 1 6 6 H 1.48498 * 109.47211 * 150.00215 * 3 2 1 7 7 C 1.40031 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99707 * 179.97438 * 7 2 1 9 9 C 1.41330 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.40678 * 119.80287 * 180.02562 * 9 7 2 11 11 C 1.38102 * 119.02135 * 179.72119 * 10 9 7 12 12 C 1.39073 * 118.59707 * 0.51589 * 11 10 9 13 13 Cl 1.73599 * 120.24653 * 179.75669 * 12 11 10 14 14 C 1.39077 * 119.51031 * 359.47514 * 12 11 10 15 15 Br 1.89102 * 119.51624 * 180.27570 * 14 12 11 16 16 N 1.31462 * 120.96504 * 0.26064 * 14 12 11 17 17 H 0.97001 * 119.99780 * 359.97438 * 1 2 3 18 18 H 1.07997 * 120.49215 * 359.96831 * 10 9 7 19 19 H 1.07995 * 120.70538 * 180.26896 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4402 0.7000 7 6 2.0077 -1.2127 0.0005 8 1 3.0877 -1.2126 0.0001 9 6 1.3011 -2.4367 0.0005 10 6 2.0087 -3.6525 0.0016 11 6 1.3020 -4.8390 0.0075 12 6 -0.0878 -4.7861 0.0011 13 17 -1.0187 -6.2514 0.0017 14 6 -0.7263 -3.5505 0.0002 15 35 -2.6159 -3.4784 -0.0006 16 7 -0.0354 -2.4321 0.0001 17 1 -0.4850 0.8401 0.0004 18 1 3.0886 -3.6581 0.0020 19 1 1.8175 -5.7879 0.0128 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238591217.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:53 Heat of formation + Delta-G solvation = 1.967998 kcal Electronic energy + Delta-G solvation = -10108.212226 eV Core-core repulsion = 7889.877666 eV Total energy + Delta-G solvation = -2218.334560 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.22867 -37.15679 -35.58204 -33.23775 -32.25267 -30.63210 -27.56092 -23.77176 -23.21673 -19.59362 -17.62858 -17.00784 -16.53761 -15.82273 -14.98553 -14.52486 -14.01196 -13.20818 -13.10674 -12.86550 -12.52830 -12.52672 -12.00969 -11.84272 -11.79344 -11.09869 -10.86247 -10.18989 -9.82020 -9.50773 -8.45880 -6.66539 0.44594 0.71356 0.84766 1.42695 1.50312 1.57638 1.59172 2.19039 2.64383 3.63099 4.11595 4.51683 4.59594 4.74330 5.14561 5.28081 5.38399 5.75729 6.04541 6.49771 6.69838 7.73104 8.29516 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.033391 B = 0.009120 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.358410 B = 3069.421431 C = 3897.936954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.018 3.982 3 Si 0.993 3.007 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.435 4.435 8 H 0.107 0.893 9 C 0.218 3.782 10 C -0.258 4.258 11 C -0.038 4.038 12 C -0.210 4.210 13 Cl -0.080 7.080 14 C 0.159 3.841 15 Br -0.038 7.038 16 N -0.486 5.486 17 H 0.285 0.715 18 H 0.138 0.862 19 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 -3.368 0.022 3.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.205 4.205 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.173 1.173 7 C -0.465 4.465 8 H 0.125 0.875 9 C 0.093 3.907 10 C -0.281 4.281 11 C -0.062 4.062 12 C -0.246 4.246 13 Cl -0.052 7.052 14 C -0.067 4.067 15 Br 0.046 6.954 16 N -0.201 5.201 17 H 0.096 0.904 18 H 0.156 0.844 19 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.061 -2.499 0.026 3.239 hybrid contribution 0.767 -0.296 -0.011 0.822 sum -1.294 -2.795 0.015 3.080 Atomic orbital electron populations 1.70197 1.09099 1.29991 1.26861 1.27144 0.95761 1.05067 0.92568 0.85027 0.79064 0.75094 0.79556 1.18685 1.19573 1.17257 1.20201 0.95586 0.89660 1.41053 0.87484 1.19100 0.87334 0.94216 0.90019 1.22076 1.00655 0.91929 1.13466 1.21119 0.90681 0.99152 0.95292 1.21188 0.92793 0.85561 1.25012 1.98232 1.73656 1.35395 1.97898 1.22910 0.92539 0.90582 1.00701 1.96470 1.02263 1.99166 1.97526 1.68484 1.08467 1.24423 1.18765 0.90431 0.84421 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.04 11.46 21.84 0.25 -37.79 13 2 C 0.02 0.87 5.50 85.29 0.47 1.34 13 3 Si 0.99 35.09 29.56 68.60 2.03 37.12 13 4 H -0.26 -9.01 7.11 99.48 0.71 -8.30 13 5 H -0.27 -9.36 7.11 99.48 0.71 -8.65 13 6 H -0.25 -8.31 7.11 99.48 0.71 -7.61 13 7 C -0.44 -21.48 9.14 23.47 0.21 -21.26 13 8 H 0.11 4.74 7.85 -2.91 -0.02 4.72 13 9 C 0.22 11.24 6.55 40.22 0.26 11.50 13 10 C -0.26 -11.40 9.83 22.83 0.22 -11.17 13 11 C -0.04 -1.55 9.96 22.44 0.22 -1.33 13 12 C -0.21 -9.18 6.37 22.67 0.14 -9.04 13 13 Cl -0.08 -2.95 27.75 -2.72 -0.08 -3.02 13 14 C 0.16 7.72 7.17 84.95 0.61 8.32 13 15 Br -0.04 -1.58 32.69 -20.37 -0.67 -2.25 13 16 N -0.49 -26.20 7.82 -183.92 -1.44 -27.64 13 17 H 0.28 13.27 8.29 -92.71 -0.77 12.50 13 18 H 0.14 5.26 8.06 -2.91 -0.02 5.24 13 19 H 0.15 4.98 8.06 -2.91 -0.02 4.95 13 Total: -1.00 -55.89 217.38 3.53 -52.36 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: 1.28 Total: 2.85 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 2.15 Total: -21.63 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -1.19 Total: -65.42 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Atomic # 17 Polarization: -2.95 SS G_CDS: -0.08 Total: -3.02 kcal Atomic # 35 Polarization: -1.58 SS G_CDS: -0.67 Total: -2.25 kcal Total: -55.89 3.53 -52.36 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238591217.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.329 kcal (2) G-P(sol) polarization free energy of solvation -55.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds