Wall clock time and date at job start Mon Mar 30 2020 07:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 11 11 N 1.46904 * 109.46860 * 60.28074 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.33358 * 122.53412 * 279.71299 * 12 9 7 14 14 S 1.75886 * 109.61199 * 179.90238 * 13 12 9 15 15 C 1.75886 * 90.97828 * 0.30382 * 14 13 12 16 16 Br 1.89100 * 125.20679 * 179.82824 * 15 14 13 17 17 C 1.33479 * 109.58476 * 359.82904 * 15 14 13 18 18 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 19 19 H 1.00906 * 110.99862 * 60.00007 * 11 9 7 20 20 H 1.00899 * 111.00096 * 183.94896 * 11 9 7 21 21 H 1.07996 * 125.19559 * 359.97438 * 13 12 9 22 22 H 1.07997 * 122.55400 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.8713 -0.6783 -0.8962 11 7 4.0062 -0.5038 1.1930 12 6 4.0139 -2.6148 -0.0107 13 6 4.0789 -3.3564 1.0957 14 16 4.7086 -4.9507 0.7018 15 6 4.8616 -4.5047 -0.9927 16 35 5.5117 -5.6341 -2.3629 17 6 4.4485 -3.2469 -1.1634 18 1 -0.4850 0.8400 -0.0004 19 1 3.6862 -0.9631 2.0325 20 1 5.0127 -0.4338 1.1805 21 1 3.7880 -3.0285 2.0828 22 1 4.4525 -2.7597 -2.1271 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238598887.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:34 Heat of formation + Delta-G solvation = 20.050610 kcal Electronic energy + Delta-G solvation = -10310.035099 eV Core-core repulsion = 8230.361461 eV Total energy + Delta-G solvation = -2079.673638 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.63641 -35.80217 -33.85925 -32.47036 -29.15493 -28.52279 -25.46628 -22.36355 -19.82342 -19.01955 -18.34572 -16.79411 -16.24048 -15.87927 -14.73014 -14.45878 -14.37154 -13.87112 -13.80899 -13.08815 -12.77871 -12.51624 -12.23741 -11.74144 -11.62802 -11.37242 -11.26659 -10.71521 -9.63466 -9.28386 -8.88900 -8.21308 -6.34909 -0.17529 0.08707 0.77799 0.95570 1.54616 1.61821 1.70875 1.97817 2.63568 3.17727 4.16863 4.26091 4.28747 4.48806 4.83222 4.96649 5.26771 5.46853 5.66838 6.16766 6.51081 6.81017 7.06831 7.43210 8.91905 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.041496 B = 0.006321 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.596779 B = 4428.766371 C = 4648.834917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.025 3.975 3 Si 0.929 3.071 4 H -0.302 1.302 5 H -0.317 1.317 6 H -0.152 1.152 7 C -0.515 4.515 8 H 0.023 0.977 9 C 0.247 3.753 10 H 0.045 0.955 11 N -0.834 5.834 12 C -0.114 4.114 13 C -0.202 4.202 14 S 0.161 5.839 15 C -0.219 4.219 16 Br 0.014 6.986 17 C -0.089 4.089 18 H 0.262 0.738 19 H 0.337 0.663 20 H 0.332 0.668 21 H 0.175 0.825 22 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.320 -10.761 -1.142 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.174 4.174 3 Si 0.755 3.245 4 H -0.230 1.230 5 H -0.246 1.246 6 H -0.073 1.073 7 C -0.553 4.553 8 H 0.042 0.958 9 C 0.135 3.865 10 H 0.063 0.937 11 N -0.364 5.364 12 C -0.129 4.129 13 C -0.339 4.339 14 S 0.424 5.576 15 C -0.415 4.415 16 Br 0.097 6.903 17 C -0.123 4.123 18 H 0.070 0.930 19 H 0.150 0.850 20 H 0.146 0.854 21 H 0.192 0.808 22 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 15.347 -11.812 -1.035 19.395 hybrid contribution -0.651 1.286 -0.563 1.548 sum 14.697 -10.526 -1.598 18.148 Atomic orbital electron populations 1.70111 1.08986 1.28065 1.52063 1.25924 0.95105 1.03997 0.92347 0.86320 0.84662 0.75951 0.77609 1.23003 1.24566 1.07266 1.20962 0.90194 0.92411 1.51750 0.95818 1.17971 0.92722 0.84524 0.91328 0.93675 1.59705 1.14613 1.57173 1.04936 1.20005 0.99806 1.00922 0.92139 1.25647 1.07873 0.96868 1.03464 1.83755 1.63015 1.13290 0.97528 1.26131 1.16371 0.99804 0.99152 1.96624 1.85861 1.62371 1.45422 1.20268 0.98450 0.93097 1.00525 0.92999 0.84952 0.85441 0.80815 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.02 13.96 21.45 0.30 -59.72 14 2 C 0.02 1.42 5.47 84.65 0.46 1.88 14 3 Si 0.93 43.59 26.94 68.60 1.85 45.43 14 4 H -0.30 -14.36 7.11 99.48 0.71 -13.65 14 5 H -0.32 -15.51 7.11 99.48 0.71 -14.80 14 6 H -0.15 -6.16 5.17 99.48 0.51 -5.65 14 7 C -0.51 -28.27 9.29 25.60 0.24 -28.03 14 8 H 0.02 1.48 7.98 -2.91 -0.02 1.45 14 9 C 0.25 10.46 2.44 43.42 0.11 10.57 14 10 H 0.05 1.94 7.51 -2.39 -0.02 1.92 14 11 N -0.83 -30.12 5.69 -174.94 -1.00 -31.11 14 12 C -0.11 -4.21 4.79 -20.92 -0.10 -4.31 14 13 C -0.20 -6.50 10.41 66.72 0.69 -5.80 14 14 S 0.16 4.42 23.34 -56.49 -1.32 3.10 14 15 C -0.22 -6.56 6.97 66.74 0.47 -6.10 14 16 Br 0.01 0.34 34.07 -20.37 -0.69 -0.35 14 17 C -0.09 -3.01 9.88 21.24 0.21 -2.80 14 18 H 0.26 15.66 8.31 -92.71 -0.77 14.89 14 19 H 0.34 11.65 7.72 -89.69 -0.69 10.96 14 20 H 0.33 9.86 9.06 -89.69 -0.81 9.05 14 21 H 0.17 5.15 7.17 -2.91 -0.02 5.13 14 22 H 0.15 4.77 8.06 -2.91 -0.02 4.75 14 Total: -1.00 -63.97 228.43 0.78 -63.19 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -0.43 Total: 14.05 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 2.08 Total: -34.59 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -0.70 Total: -90.84 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.85 Total: 45.43 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -1.32 Total: 3.10 kcal Atomic # 35 Polarization: 0.34 SS G_CDS: -0.69 Total: -0.35 kcal Total: -63.97 0.78 -63.19 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238598887.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.238 kcal (2) G-P(sol) polarization free energy of solvation -63.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds